ID HE649913; SV 1; linear; genomic RNA; STD; VRL; 4415 BP. XX AC HE649913; XX DT 16-JAN-2012 (Rel. 111, Created) DT 26-MAR-2012 (Rel. 112, Last updated, Version 2) XX DE Schmallenberg virus gene for M polyprotein, segment M, genomic RNA, isolate DE BH80/11-4 XX KW . XX OS Schmallenberg virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus; OC Schmallenberg orthobunyavirus. XX RN [1] RP 1-4415 RA Hoeper D.; RT ; RL Submitted (03-JAN-2012) to the INSDC. RL Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health, RL Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems RL 17493, GERMANY. XX RN [2] RC this article is the first description of the virus including its RC full-length genome sequence RX DOI; 10.3201/eid1803.111905. RX PUBMED; 22376991. RA Hoffmann B., Scheuch M., Hoper D., Jungblut R., Holsteg M., Schirrmeier H., RA Eschbaumer M., Goller K.V., Wernike K., Fischer M., Breithaupt A., RA Mettenleiter T.C., Beer M.; RT "Novel orthobunyavirus in cattle, europe, 2011"; RL Emerg. Infect. Dis. 18(3):469-472(2012). XX DR MD5; 5f90a8308b48b86f5a6a93611967e288. DR EuropePMC; PMC3407049; 22848676. DR EuropePMC; PMC3542112; 23326235. DR EuropePMC; PMC4300748; 25410877. DR EuropePMC; PMC5304187; 28211908. XX CC related sequences HE649912, HE649914. XX FH Key Location/Qualifiers FH FT source 1..4415 FT /organism="Schmallenberg virus" FT /segment="M" FT /host="Bos taurus" FT /isolate="BH80/11-4" FT /mol_type="genomic RNA" FT /country="Germany:North Rhine-Westphalia, Schmallenberg" FT /collection_date="2011" FT /db_xref="taxon:1133363" FT CDS 12..4223 FT /transl_table=1 FT /gene="M" FT /product="M polyprotein" FT /db_xref="GOA:H2AM12" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR005168" FT /db_xref="InterPro:IPR026400" FT /db_xref="PDB:6H3S" FT /db_xref="PDB:6H3T" FT /db_xref="PDB:6H3U" FT /db_xref="UniProtKB/Swiss-Prot:H2AM12" FT /protein_id="CCF55030.1" FT /translation="MLLNIVLISNLACLAFALPLKEGTRGSRCFLNGELVKTVNTSKVV FT SECCVKDDISIIKSNAEHYKSGDRLAAVIKYYRLYQVKDWHSCNPIYDDHGSFMILDID FT NTGTLIPKMHTCRVECEIALNKDTGEVILNSYRINHYRISGTMHVSGWFKNKIEIPLEN FT TCESIEVTCGLKTLNFHACFHTHKSCTRYFKGSILPELMIESFCTNLELILLVTFILVG FT SVMMMILTKTYIVYVFIPIFYPFVKLYAYMYNKYFKLCKNCLLAVHPFTNCPSTCICGM FT IYTTTESLKLHRMCNNCSGYKALPKTRKLCKSKISNIVLCVITSLIFFSFITPISSQCI FT DIEKLPDEYITCKRELANIKSLTIDDTYSFIYSCTCIIVLILLKKAAKYILYCNCSFCG FT MVHERRGLKIMDNFTNKCLSCVCAENKGLTIHRASEKCLFKFESSYNRTGLIIFMLLLV FT PTIVMTQETSINCKNIQSTQLTIEHLSKCMAFYQNKTSSPVVINEIISDASVDEQELIK FT SLNLNCNVIDRFISESSVIETQVYYEYIKSQLCPLQVHDIFTINSASNIQWKALARSFT FT LGVCNTNPHKHICRCLESMQMCTSTKTDHAREMSIYYDGHPDRFEHDMKIILNIMRYIV FT PGLGRVLLDQIKQTKDYQALRHIQGKLSPKSQSNLQLKGFLEFVDFILGANVTIEKTPQ FT TLTTLSLIKGAHRNLDQKDPGPTPILVCKSPQKVVCYSPRGVTHPGDYISCKSKMYKWP FT SLGVYKHNRDQQQACSSDTHCLEMFEPAERTITTKICKVSDMTYSESPYSTGIPSCNVK FT RFGSCNVRGHQWQIAECSNGLFYYVSAKAHSKTNDITLYCLSANCLDLRYAFRSSSCSD FT IVWDTSYRNKLTPKSINHPDIENYIAALQSDIANDLTMHYFKPLKNLPAIIPQYKTMTL FT NGDKVSNGIRNSYIESHIPAINGLSAGINIAMPNGESLFSIIIYVRRVINKASYRFLYE FT TGPTIGINAKHEEVCTGKCPSPIPHQDGWVTFSKERSSNWGCEEWGCLAINDGCLYGSC FT QDIIRPEYKIYKKSSIEQKDVEVCITMAHESFCSTVDVLQPLISDRIQLDIQTIQMDSM FT PNIIAVKNGKVYVGDINDLGSTAKKCGSVQLYSEGIIGSGTPKFDYVCHAFNRKDVILR FT RCFDNSYQSCLLLEQDNTLTIASTSHMEVHKKVSSVGTINYKIMLGDFDYNAYSTQATV FT TIDEIRCGGCYGCPEGMACALKLSTNTIGSCSIKSNCDTYIKIIAVDPMQSEYSIKLNC FT PLATETVSVSVCSASAYTKPSISKNQPKIVLNSLDETSYIEQHDKKCSTWLCRVYKEGI FT SVIFQPLFGNLSFYWRLTIYIIISLIMLILFLYILIPLCKRLKGLLEYNERIYQMENKF FT K" XX SQ Sequence 4415 BP; 1565 A; 768 C; 784 G; 1298 T; 0 other; ccacaatcaa aatgcttctc aacattgtct tgatatctaa cttagcctgt ttagcttttg 60 cactcccact taaggaaggc actagagggt ctaggtgctt cctgaatggc gaactggtta 120 aaactgttaa cacatcaaag gtcgtttcag aatgctgtgt gaaagacgac atatctatca 180 ttaaatcaaa tgctgaacat tataaatcag gagatcggtt ggctgctgta ataaaatatt 240 atcgtttata tcaggtgaag gattggcatt cttgcaatcc aatttatgat gaccacggtt 300 cctttatgat attagatata gataatactg gcacattaat ccctaaaatg catacatgca 360 gagttgaatg cgaaatagca ctgaataaag atactggcga agttatattg aattcatatc 420 gaattaacca ctaccgaatc tcgggcacaa tgcatgtatc aggttggttt aaaaacaaaa 480 ttgagattcc tttggaaaac acatgcgaat ccattgaggt aacatgtgga ttaaaaacac 540 ttaattttca tgcatgtttc catacccata agtcatgcac ccgctatttt aaaggatcaa 600 tcctgccgga attgatgatc gaatcatttt gtacgaatct tgaattaata ctgctagtaa 660 ctttcatatt agttgggtct gtcatgatga tgatattgac gaaaacatat atagtatatg 720 tgttcattcc tatattttat ccatttgtga aattatatgc ttatatgtac aacaaatatt 780 ttaaattgtg taaaaattgc ctgttagcag tacatccctt tacaaattgc ccatcgacat 840 gcatctgtgg aatgatttac actaccactg aatcactcaa attgcatcgc atgtgtaaca 900 attgttctgg ctataaagca ttgccgaaaa caaggaaatt gtgtaaaagt aaaatatcca 960 atatagtgct atgtgtgata acatcactga tatttttctc atttatcaca cctatatcga 1020 gtcaatgtat cgatatagaa aaactgccag acgagtatat tacatgtaaa agagagctag 1080 ctaatatcaa aagcttgaca attgatgaca catatagctt tatatattcc tgtacatgca 1140 taattgtgtt aatattactt aaaaaggcag caaagtatat cttgtactgc aactgcagct 1200 tttgtggtat ggtacatgaa cgacgtggat tgaagataat ggacaacttt acaaacaagt 1260 gcctaagttg tgtatgcgca gaaaacaagg gcttaacaat tcacagagcc tctgagaaat 1320 gtctgttcaa atttgaatca agttataata ggaccgggtt gataatcttt atgcttctgt 1380 tagtcccaac aattgtaatg acgcaagaaa ctagtattaa ctgcaaaaac attcaatcaa 1440 ctcagcttac aatagagcac ctgagtaagt gcatggcatt ttatcaaaat aaaacaagct 1500 caccagttgt aatcaatgaa ataatttcag atgcttcagt agacgaacaa gaattaataa 1560 aaagtttaaa cttgaactgt aatgtcatag ataggtttat ttccgaatct agtgttattg 1620 agactcaagt ttattatgag tatataaaat cacagttgtg ccctctccaa gtgcatgata 1680 ttttcactat caattcagca agtaacatac aatggaaagc actggcccga agtttcacct 1740 taggagtgtg caatacgaat cctcataaac atatatgtag atgcttggag tctatgcaaa 1800 tgtgcacatc aaccaagaca gaccacgcta gggaaatgtc aatatattat gatggtcatc 1860 cagatcgctt tgagcatgac atgaaaataa tattgaatat aatgagatat atagtccctg 1920 gattaggtcg agtcttgctt gatcaaatca aacaaacaaa agactaccaa gctttacgcc 1980 acatacaagg taagctttct cctaaatcgc agtcaaattt acaacttaaa ggatttctgg 2040 aatttgttga ttttatcctt ggtgcaaacg tgacaataga aaaaacccct caaacattaa 2100 ctacattatc tttgataaaa ggagcccaca gaaacttgga tcaaaaagat ccaggtccaa 2160 caccaatact ggtatgcaaa tcaccacaaa aagtggtatg ctactcacca cgtggtgtca 2220 cacacccagg agattatata tcatgcaaat ctaagatgta taagtggcca tctttagggg 2280 tatacaaaca taatagagac cagcaacaag cctgcagcag tgacacacat tgcctagaga 2340 tgtttgaacc agcagaaaga acaataacta caaaaatatg caaagtaagt gatatgactt 2400 attcagaatc gccatatagt actggaatac catcatgcaa cgtgaagaga tttggatcat 2460 gtaatgtaag gggtcatcaa tggcaaattg cagaatgctc aaatggctta ttttactatg 2520 tttcagctaa agcccattcg aaaactaacg atataacact gtactgttta tcagcaaatt 2580 gcctggactt gcgttatgca ttcagatcca gtagttgttc agatatagta tgggatacaa 2640 gttatcgaaa taaattaaca cctaaatcta ttaatcatcc agatattgaa aactacatag 2700 cagcgcttca gtcagatatt gcaaatgatt taactatgca ctactttaaa ccattaaaaa 2760 accttccagc aataattcct caatacaaaa caatgacatt gaatggggac aaggtatcaa 2820 atggtattag aaatagttat atcgagtcgc acatccctgc aattaatggt ttatcagcag 2880 ggattaatat tgccatgcca aatggagaaa gcctcttttc cattattatc tatgtcagaa 2940 gagtaataaa taaagcatcg tatcgatttc tatatgaaac aggacccaca attggaataa 3000 atgccaagca cgaagaggta tgtaccggga agtgcccaag cccaatacca catcaagatg 3060 gttgggtcac attctcaaag gaaagatcaa gtaattgggg ctgtgaagaa tggggttgct 3120 tggcaataaa tgatggttgt ttatatgggt catgtcaaga cataataagg cctgaatata 3180 agatatacaa gaagtctagt attgaacaaa aggatgttga agtttgtata accatggccc 3240 atgaatcatt ctgcagtacc gttgatgttc tccaaccttt aattagcgac aggatacaat 3300 tagatatcca aacgattcaa atggactcta tgccaaatat aattgcagtc aagaatggga 3360 aagtttatgt tggagatatc aatgacttag gttcgacagc aaagaaatgt ggctcagtcc 3420 aattatattc tgaagggatc attggatcgg gaaccccaaa atttgattat gtttgccatg 3480 cattcaatcg taaagatgtc atccttcgaa gatgctttga taactcatat cagtcttgtc 3540 ttctcttgga acaagataat acattaacta ttgcttctac cagtcatatg gaagtgcata 3600 aaaaagtttc aagcgtgggt acaatcaatt ataaaattat gttaggggat tttgactaca 3660 atgcatattc aacacaagca acagtcacaa tagatgagat caggtgtggt ggttgttatg 3720 gctgccctga aggaatggct tgcgcactca aattgagtac caataccatc gggagttgtt 3780 caataaaaag taactgcgat acatacatta aaataatagc agtcgatccg atgcagagcg 3840 agtattccat taagttaaac tgcccactag caacagagac agtttcagta agtgtgtgct 3900 cagcttctgc ttacacaaaa ccttcaatat ctaaaaatca accaaaaatt gttttgaatt 3960 ccttagatga aacatcttac atcgagcaac atgataaaaa gtgttctaca tggctttgca 4020 gagtttataa agaagggatt agcgtaatat ttcagcctct atttggcaac ctatctttct 4080 attggagact gacaatatat ataataatct ctttgattat gctaattctg tttctataca 4140 tattaatacc actgtgcaaa cggctaaaag gtttattgga atacaatgag agaatatacc 4200 aaatggaaaa taaatttaag tgataagcct tataacaatg agcaattata aatgaataaa 4260 taaaaacaat aaaagataaa caaataacaa catatatatg tggttacaca tatatatgta 4320 attattcagc tgagaagttt ttcatgtggt agaacactac tcacctatct ttctattgga 4380 gactgacaat atatataata atctctttga ttatg 4415 //