ID HE617299; SV 1; circular; genomic DNA; STD; VRL; 2769 BP. XX AC HE617299; XX DT 11-MAR-2012 (Rel. 112, Created) DT 11-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Cassava mosaic Madagascar virus segment DNA-A complete sequence, isolate DE MG:Tol:06 XX KW . XX OS Cassava mosaic Madagascar virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2769 RA Harimalala M.A.; RT ; RL Submitted (09-DEC-2011) to the INSDC. RL Harimalala M.A., UMR PVBMT, CIRAD, 97410, 97410, REUNION. XX RN [2] RA Harimalala M.A., Lefeuvre P., Hoareau M., Villemot J., Tiendrebeogo F., RA Ranomenjanahary S., Andrianjaka A., Reynaud B., Lett J.M.; RT "A novel cassava-infecting begomovirus from Madagascar: Cassava mosaic RT Madagascar virus"; RL Unpublished. XX DR MD5; 1d811fed76ea8aca41f7690f11cf2245. XX FH Key Location/Qualifiers FH FT source 1..2769 FT /organism="Cassava mosaic Madagascar virus" FT /segment="DNA-A" FT /host="Manihot esculenta" FT /isolate="MG:Tol:06" FT /mol_type="genomic DNA" FT /country="Madagascar:Toliary" FT /collected_by="Sahondramalala Ranomenjanahary" FT /collection_date="2006" FT /db_xref="taxon:1125764" FT CDS 116..499 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein (MP)" FT /db_xref="GOA:H8WR46" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H8WR46" FT /protein_id="CCF12086.1" FT /translation="MLVQQVVLHFKMWDPLLNEFPDSVHGFRCMLAIKYLQAVEVTYES FT NTLGRDLIRDLISVIRARDYVEASRRYNNCHSRLEGASEAELRQPIQQPCCCPHCPRHK FT QVQIMEVQTHVSEAQDVQDVQKP" FT CDS 309..1076 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein (CP)" FT /db_xref="GOA:H8WR47" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8WR47" FT /protein_id="CCF12087.1" FT /translation="MSKRPADIIIATPASKVRRKLNFDSPYSSRAVVPIVPGTSKFKSW FT KFRPMYRKPRMYRMFKSPDVPRGCEGPCKVQSYEQRDDVKHTGTVRCVSDVTRGPGITH FT RVGKRFCIKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN FT EPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQLWLGDFLGLIIMWCIITRRQLSMR FT IIQRMRYCCIWHVRMPLIQCMLRLKYASIFMMQ" FT CDS complement(1081..>1485) FT /codon_start=1 FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer protein (REn)" FT /db_xref="GOA:H8WR48" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8WR48" FT /protein_id="CCF12088.1" FT /translation="MDSRTGALITAPQAQNGVFTWEINNPLYFTIPRHDSRPSHLNHDI FT ITIQIRFNHNIRKELGIHKCFLNFQVWTTLHPQTGHFLSVFKRQVLKYLDNVGVISINT FT VIRAVDHVLYNVLVNTLQVMESHEIKFNLY" FT CDS complement(1226..>1633) FT /codon_start=1 FT /transl_table=1 FT /gene="AC2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:H8WR49" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8WR49" FT /protein_id="CCF12089.1" FT /translation="MQPSSPSASHCSQVPIKVLHRIAKTRRIRRRRIDLSCGCSYYLHI FT DCINHGFTHRGTHHCSSSAEWRFYLGDKQSPLFHDTQTRLETVPPEPRHHHHPNTLQPQ FT HPEGIGDSQMFSELPGLDDLTPSDWSFLKRI" FT CDS complement(<1543..>2621) FT /codon_start=1 FT /transl_table=1 FT /gene="AC1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:H8WR50" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8WR50" FT /protein_id="CCF12090.1" FT /translation="MPPPKRFKIQAKNYFLTYPKCSLSKHDALSQILNIPTPTNKKYIK FT VCRELHEDGQPHLHMLIQFEGKFSCTNKRLFDLVSPTTSTHFHPNIQGAKSSSDVKSYI FT DKDGDTTEWGEFQIDARSARGGCQNANDACAEALNSRSKAAALLIIKEKLPKEFIFQYH FT NLSSNLDRIFQEPPAPYVSPFLSSSFDQVPDDLEVWVSENIMHPAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVFTNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNASLKAWALKNATFVTLSEPL FT FTGSHQGPTPHSQDETHQT" FT CDS complement(2207..>2464) FT /codon_start=1 FT /transl_table=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H8WR51" FT /protein_id="CCF12091.1" FT /translation="MGNLISTCLFNSKANSHAQISDYSTWYPQQRQPISIQTFKEPNPA FT PTSSPTSTKMGIQLSGANSRSTQDLLEAAAKMLMTHVPKP" XX SQ Sequence 2769 BP; 737 A; 518 C; 686 G; 828 T; 0 other; accggatggc cgcgcccgaa aaagtaagtg ggccccacaa tggtccccac gcactaattt 60 atgtcgacca atcacattgt gtctgggaag actacataat tataatggtc tttatatgct 120 tgtccaacaa gtagttttgc atttcaaaat gtgggatcca ttgttaaatg aatttcctga 180 ctcggttcat ggatttcgtt gtatgctagc tataaaatat ttgcaggctg tggaggtaac 240 ctacgagtcc aatactttgg gccgcgattt aattcgggat ctcatttctg ttattagggc 300 tcgtgactat gtcgaagcgt cccgccgata taataattgc cactcccgcc tcgaaggtgc 360 gtcggaagct gaacttcgac agcccataca gcagccgtgc tgttgtcccc attgtcccag 420 gcacaagcaa gttcaaatca tggaagttca gacccatgta tcggaagccc aggatgtaca 480 ggatgttcaa aagccctgat gttcctcgtg gctgtgaagg cccatgtaag gttcaatcat 540 atgaacagcg agatgacgtc aagcatactg gcactgttcg ttgtgtgagt gatgtcacgc 600 gtggtccggg aattacgcat agagtgggta aaaggttttg tatcaagtct atatatgtgt 660 taggtaagat atggatggat gaaaatatca agaagcagaa ccatactaac caggtcatgt 720 tcttcttagt ccgtgacaga aggccctatg gcactagccc catggacttt ggacaggttt 780 ttaatatgtt tgataatgag cccagtacag caactgtgaa gaacgatctt agggataggt 840 atcaagttat gcggaagttt catgccaccg ttgttggggg tccttctggg atgaaggagc 900 agctttggtt aggagatttt ttaggattaa taatcatgtg gtgtataatc accaggaggc 960 agctaagtat gagaatcata cagagaatgc gttattgttg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcta cgcttaaaat acgcatctat ttttatgatg cagtaacaaa 1080 ttaatacaaa ttaaatttta tttcgtggga ctccataact tggagtgtgt ttacaagtac 1140 attgtacaat acgtgatcaa cagcgcgaat tacagtgttt attgaaataa cgcctacatt 1200 atctaaatac ttaagaactt gacgcttaaa tacgcttaag aaatgaccag tctgagggtg 1260 taaggtcgtc cagacctgga agttcagaaa acatttgtga atccccaatt ccttccggat 1320 gttgtggttg aagcgtattt ggatggtgat gatgtcgtgg ttcaggtggg acggtctcga 1380 gtcgtgtctg ggtatcgtga aataaagggg attgtttatc tcccaggtaa aaacgccatt 1440 ctgcgcttga ggagcagtga tgagtgcccc tgtgcgtgaa tccatgattg atgcagtcga 1500 tgtggagata atatgaacag ccgcagctta ggtcgatacg tctacgtctg atgcgtctcg 1560 tcttggctat gcggtgtagg accttgatgg gaacctgtga acaatggctc gctgagggtg 1620 acgaaggttg catttttcag tgcccacgct ttgagagatg cattcttttc ttcatcgaga 1680 tattctttat atgaagaagt cggccccgga ttgcagagga agatagtggg aattccgcct 1740 ttaatttgaa ttggctttcc gtattttgtg ttgctttgcc agtctcgttg tgcacccatg 1800 aactctttaa agtgctttag atagtgcgga tcgacatcat caataatgtt gtaccatgca 1860 tcattagtga agactttggg actgaggtcg agatgaccac ataaataatt atgtggtccc 1920 aatgatctgg cccacattgt cttccctgta cgactatcac cctcaataac aatactattc 1980 ggtctccaag gccgcgcagc gggatgcata atgttttctg acacccagac ctcaaggtcg 2040 tcaggaactt ggtcgaatga agaagacaga aatggagaaa catagggagc tggtggctct 2100 tgaaaaatcc tatctaaatt actacttaag ttatgatatt gaaaaataaa ttctttgggg 2160 agtttctcct taataattag aagtgcagct gccttcgaac gtgagtttaa ggcttcggca 2220 catgcgtcat tagcattttg gcagccgcct ctagcagatc ttgcgtcgat ctggaattcg 2280 ccccactcag ttgtatcccc atctttgtcg atgtaggact tgacgtcgga gctggatttg 2340 gctccttgaa tgtttggatg gaaatgggtt gacgttgttg gggataccag gtcgaataat 2400 cgcttatttg tgcatgagaa tttgccttcg aattgaataa gcatgtggag atgaggttgc 2460 ccatcttcgt gaagttctcg gcacactttg atgtatttct tattagttgg agttgggatg 2520 tttaagattt gggataatgc gtcgtgttta gatagagagc atttgggata tgtgaggaaa 2580 tagtttttgg cttgtatttt aaaacgcttg ggaggaggca tttatgcgag agcaattgga 2640 gacaccttgg ttgatgtctc tactgaattg gagacaatat atagtgtctc caaatggcat 2700 tatggtaatt agttaaagct atgttcaaaa ttcaaaaatt ggaccaaaag cggccatccg 2760 tataatatt 2769 //