ID HE613667; SV 1; linear; genomic RNA; STD; VRL; 3038 BP. XX AC HE613667; XX DT 24-NOV-2011 (Rel. 110, Created) DT 24-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Cucumber mosaic virus segment RNA2, genomic RNA, isolate Palampur XX KW complete viral segment. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3038 RA Kumari R.; RT ; RL Submitted (21-NOV-2011) to the INSDC. RL Kumari R., Technology (CSIR), Floriculture Division, Institute of Himalayan RL Bioresource, P.O. Box 6, Palampur, Himachal Pradesh 176061, INDIA. XX RN [2] RA Kumari R., Bhardwaj P., Singh L., Hallan V., Zaidi A.A.; RT "Molecular characterization of Cucumber mosaic virus isolate Palampur"; RL Unpublished. XX DR MD5; 20a87e49455f7557bc8411fe1c870601. DR EuropePMC; PMC3650197; 24426254. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3038 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="Cucumis sativus" FT /lab_host="Nicotiana glutinosa" FT /isolate="Palampur" FT /mol_type="genomic RNA" FT /country="India" FT /isolation_source="lab host leaves" FT /collected_by="Reenu kumari" FT /identified_by="Reenu Kumari" FT /db_xref="taxon:12305" FT CDS 93..2615 FT /gene="2a" FT /product="2a Replicase protein" FT /db_xref="GOA:G8ZFH3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G8ZFH3" FT /protein_id="CCE67216.1" FT /translation="MTSPPPTFSFANLLNGSYGVDTPEEVERVRREQREDAEAALRNYK FT PLPTVDVGESVPRDEPIVSQTVTTAPVTSVVDAFVSFGAEDYLEMSPSELLSAFELMVK FT PLRIGEVLCPNFDRSLFISSVAMARTLLLAPLTSTRTLKRFEDLVAAIYLKTDFFIEDD FT GPQTDVSQSDVPGYIFEPGQHSSGFEPPPICAKCDLILYQCPRFDFNALRESCAEKTFS FT HDYVIEGLDGVIDNATLLSNLGPFLLPVHCSYSKTEDPDFVVDPSLARPTDRVDVHVVQ FT AVCDTTLPTHVNYDDSFHQVFVDSADYSIDMDHVRLRQSDLVAKIPDGGHMLPVLNTGS FT GHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFRLSYMNADALAKSNFVN FT VVGNFHAYMQKWQSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVGRPVPATI FT TFHKKTITSQFSPLFVSLFERFQRCLRERIVLPVGKISSLEMTSFSVLNKHCLEIDLSK FT FDKSQGEFHLMIQEHILNDLGCPAPVTKWWCDFHRFSYIKDKRAGVGMPISFQRRTGDA FT FTYFGNTIVTMAEFAWCCDTDQFNRLLFSGDDSLAFSKLPPVGDPSKFTTLFNMEAKVM FT EPAVPYICSKFLLSDEFGNTFPVPDPLREIQRLGTKKIPYSDNNDFLIAHFMCFVDRLK FT FMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFRKYTANFSAYKELYYSDRQQCDLV FT NTFCISEFQVIRRTTVKKKKNGCVDSSGVDRRPPASPFAGGETSKTKVSRQKPASEGLQ FT ESQRESAIYSETFPDVTIPRSRSRGLVS" FT CDS 2413..2715 FT /gene="2b" FT /product="viral suppressor" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:G8ZFH4" FT /protein_id="CCE67217.1" FT /translation="MDVLTVVVSTADLQLAHLQEVKRRRRRSHVRSRRARGYKSPSERA FT RSIARLFQMLPFHGVDPVDWFPDVVRSPSVTSLVSYESFDDTDWFAGNEWAEGSF" XX SQ Sequence 3038 BP; 714 A; 694 C; 691 G; 939 T; 0 other; gtttattctc aagagcgtat ggttcgaccc ctgcctcctc tgtgaaatta ccctagtttt 60 attgatctac ttctagtctc ttttctgtta ctatgacaag tcctccaccc actttctcat 120 tcgccaatct gttgaatggc tcctatggtg ttgacactcc cgaggaagtg gaacgcgtta 180 gacgtgaaca acgcgaagat gctgaggcgg ctttacgtaa ttataagcct ttacccaccg 240 tggatgtcgg tgagagtgtc cctagagacg aacctattgt ctcgcaaacc gtcactacag 300 ctcctgttac atcagtcgtt gatgcgtttg tttcttttgg tgctgaggac taccttgaaa 360 tgtccccatc tgagctgctt tccgcttttg agttgatggt caaacccttg cgtatcggtg 420 aagtgttgtg cccgaatttt gatcgttcgc tattcatctc cagcgtcgct atggctagga 480 cgttgttgtt ggcgccactc acatccaccc gaacgttgaa gcgttttgaa gaccttgtgg 540 ccgcgatcta tctaaaaact gattttttta tagaagacga tgggccccag actgatgtct 600 cccaaagcga tgtgcccggt tatatcttcg aaccagggca acactcatcc ggttttgagc 660 ccccccctat ttgtgctaaa tgtgacttga ttttgtatca atgtccgcgt ttcgatttta 720 acgcacttcg tgagtcttgc gcagagaaaa cattctctca cgactatgtt atcgagggtc 780 tcgatggtgt cattgataat gctacgctgt tatcaaactt gggaccattt ttgttacctg 840 tccattgctc ttattcaaag accgaggacc ccgatttcgt cgttgatcct agtcttgcgc 900 gacctactga tagggttgat gtacatgtag ttcaagccgt ttgcgatacc actctaccca 960 cccatgttaa ctacgatgat tcctttcatc aagtctttgt ggattctgct gattattcca 1020 ttgacatgga tcacgttcgg ttacgtcaat ccgatttagt agcaaaaatt ccggatggtg 1080 ggcatatgtt accggtgtta aataccggga gtggtcacaa gagagtaggt actacgaagg 1140 aggttttaac agcaataaag aaaagaaatg ctgatgtccc tgagcttggt gactctgtta 1200 atctgtcgcg cctgagcaaa gcagtagccg aacggtttcg tctctcgtat atgaatgctg 1260 acgctttggc taaaagtaac tttgttaatg ttgtcggtaa ttttcacgct tacatgcaaa 1320 aatggcaatc ttctggactt tcttatgatg atcttcccga tcttcacgcg gagaatttac 1380 agttttatga tcacatgatt aagtccgatg ttaagccagt tgtcaccgac acgttgaacg 1440 tcggcagacc tgtcccagct actattacat ttcacaaaaa gaccataaca tcccagttct 1500 caccgttgtt tgtatctctg tttgagagat tccagaggtg ccttcgggaa cgtattgttc 1560 tgcccgttgg taagatttcc tcccttgaga tgactagttt ttcagtcttg aataaacatt 1620 gtcttgaaat tgatttatct aaattcgaca aatctcaagg tgagttccac cttatgattc 1680 aagagcacat tctcaacgat cttggttgcc cagcacccgt caccaaatgg tggtgtgact 1740 ttcataggtt ttcctatatt aaagacaaac gtgctggggt tggaatgccc atcagctttc 1800 aacgccgtac tggtgatgct ttcacctatt ttggcaatac tattgtcacg atggctgagt 1860 ttgcttggtg ttgtgacact gatcaattta accgattgct cttttctggt gacgattctc 1920 tggctttttc taagctccca cctgttggag accctagtaa gtttacaact ttattcaaca 1980 tggaagctaa ggtgatggaa cctgcagtac cttacatttg ttcgaagttt ctactctctg 2040 atgagtttgg taatacgttt ccagtccccg acccactacg tgaaatccag cggttaggta 2100 ccaagaagat accgtactcg gacaacaacg atttcttgat cgctcatttt atgtgttttg 2160 ttgacaggct gaagtttatg gacaggatgt cgcagtcttg tattgatcaa ttgtccattt 2220 tcttcgagtt gaaatacaag aagtccggga acgaagccgc cctagttttg ggcgcgttta 2280 ggaagtacac cgctaatttt agcgcctata aggagcttta ttactctgac cgtcaacaat 2340 gtgacttggt caatacgttt tgtatatctg agttccaggt gattcgtcgc actaccgtta 2400 agaagaagaa gaatggatgt gttgacagta gtggtgtcga ccgccgacct ccagctagcc 2460 catttgcagg aggtgaaacg tcgaagacga aggtctcacg tcagaagccg gcgagcgagg 2520 ggttacaaga gtcccagcga gagagcgcga tctatagcga gacttttcca gatgttacca 2580 ttccacggag tagatcccgt ggattggttt cctgatgtcg ttcgctctcc gtccgttacc 2640 agccttgttt cttatgaatc ttttgatgat actgattggt ttgctggtaa cgaatgggcc 2700 gaagggtcgt tttgatttcc gacccttcgt cgtccgaaga cgttaaacta cactctcttt 2760 attgcgagtg ctgagttggt agttttctct aaactatctg aagtcgctaa atccattact 2820 ggttgcgaac gggttgtcca tccagcttac ggctaaaatg gtcagtcatg cctcaaaggc 2880 acgccgacac cctacagggt tgtcgaggta cccttgaaat catctcctag atttcttcgg 2940 aagagcttcg tgagaggctc gtgcacggta atacactgat attaccaaga gtgcgggtat 3000 cgcctgtggt tttccacagg ttctccataa ggagacca 3038 //