ID HE613269; SV 1; linear; genomic RNA; STD; VRL; 7386 BP. XX AC HE613269; XX DT 17-MAY-2012 (Rel. 112, Created) DT 17-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Grapevine deformation virus segment RNA-1, isolate N66, genomic RNA XX KW . XX OS Grapevine deformation virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7386 RA Elbeaino T.; RT ; RL Submitted (18-NOV-2011) to the INSDC. RL Elbeaino T., IPM-Virology, Istituto Agronomico Mediterraneo di Bari, Via RL Ceglie 9, Valenzano-Bari, ITALY. XX RN [2] RX PUBMED; 22480575. RA Elbeaino T., Digiaro M., Ghebremeskel S., Martelli G.P.; RT "Grapevine deformation virus: Completion of the sequence and evidence on RT its origin from recombination events between Grapevine fanleaf virus and RT Arabis mosaic virus"; RL Virus Res. 166(1-2):136-140(2012). XX DR MD5; 7e3ede1634fae7e9b156ecc3a98774db. XX FH Key Location/Qualifiers FH FT source 1..7386 FT /organism="Grapevine deformation virus" FT /segment="RNA-1" FT /host="Vitis vinifera, cultivar Dimrit" FT /isolate="N66" FT /mol_type="genomic RNA" FT /country="Turkey" FT /collected_by="Elbeaino T. and Digiaro M." FT /identified_by="Elbeaino T." FT /db_xref="taxon:233784" FT CDS 288..7142 FT /transl_table=1 FT /product="polyprotein" FT /function="encodes proteins necessary for replication" FT /db_xref="GOA:I2FLU2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:I2FLU2" FT /protein_id="CCE67066.1" FT /translation="MWQVSEGSQCCCTGKTFSNAEAKELRYVCSCWMSTRLVKAEAPPQ FT QSRRSGIAPTPLKSKGTVQVPFPKVVGVKPNDPKSKGASVAPTPLLKQRCEVVVQYGPP FT ADIELVYPPLVREEERSSKKVVLPPTPKVEIRVPVCCAPKWMVAIPKPPVKLALKASKL FT RFPKRAVAYNGVNFIDSRGKVVLSEGAKRILKGIRVATKQRLRAARRIVACRKVRAARA FT LAKFEAIAQSERLDQLETGFQVVLPAPKMSCSPKGAAPSTTSVVVVKKRKLAKLPKAVP FT EQDFSCLVGFDWGEKSHPIETDIEDDWVLVEKPVLLRQAAHTVQGRATEALTRFAATSG FT FSLDAHQKVEDFASLGEAEYLMAGEFADLCLQSLVYNDAPVLSATIAELKEDTDFADAI FT ELLKLELAELPTDSTTCAPFKQWASAAKQMAKGAGALVGDFARAAGAAAVISFDMAVEF FT LQDKALKFCKKIFDVTMAPYLQHLASAHSIVKKIWEKLSEWMESLKSKASLALEVMAQH FT AIFALGAMVIGGVVVLVEKVLVAAKIIPNCGIILGAFLTLFFASLGLTALECTAEEIFR FT LHACCKSAIYSMYSVNESTMVGEGESLTMGAASGLDTAVSALTRIGQSMISFKLGSMLY FT YAKIAQGFRPTCKGKKAIGELTSWLIDLVGSIYSTVTGQESTFFDELSTIVCLDVRAWL FT LKSKRVRLQVETMAVGDRITLNTIAKLLEDGHKILVTAAGVPRKMSADFTMCIKEEVSK FT LEEVHARTACAGINEGMRAFPFWVYIYGASQSGKTTIANSIIIPELLDEMNLPKSSVYS FT RPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYIHEKGMSMD FT SPLVVTTANTVVPPTNSQVVDLPSFYNRRAAVLEVRRKDGGIFDPEAYDSCIEVRFMHS FT KCPYVDSAGVPQGPAVNTPMDEGWITPSEAVAVLKNLLGVHVLNEEKKLIAYRERIGHD FT HPIYNAAKEFIGNMYYPGQWLTAEQKLTYEIDDSEFSFLAVDGKMYKYNALGKLHPCTS FT KPSHPNVIPWLEKKTLEIVHWDVHKHIATGPRNALVACFLQGFVQGQSKVESVERMGKD FT SSPEQQSFFRKLSLSERIYLRLCQIRIDNIKQEELVGSSRGPMAVLRECLLRSKQVVVE FT NYSLLLTLVAIILLISAAYTLLSTIVALAGCSSFAGGMVAVTAVNSASIPCSEPRMEER FT YPPRNRFVSRISKIRGEGPSQGQGEHEELVTEFYYYSDGVKKLISTCWFKGRSLLMTRH FT QALAVPVGTEVEIIYADGTVKKLVWPGRQEDGNCKGFVEFPENELVVFEHPHLLTMPIK FT YEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWNKYATARSETHTLKDEGGGNVYQ FT NKIRRFIVYAHEAKKYDCGALAVAVIQGVPKVIAMLVSGNRGVTYSSVIPAYSSSYLRG FT DVPYVPEDGIVTSGYRKVGYLHRSDAPHVPSRTAFMRVPDELCFPYPNPKQPAILSTED FT ERLKGTVHEGYDPVKDGMKKFAEPMSLLDEKLLDEVAGDMVHTWYDPGEFLEDISLDQA FT INGDEEEEYFDSLVMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRIFVAGCKPEKAYYQ FT LEEDSKTRVPALVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLM FT KKRGHLPCQVGINPYSREWTDLYHRLGELSDVGYNCDYRAFDGLITGQILSVIADMINA FT GYRDPIGNQQRKNLLLAISGRLSICGNQVYATEAGIPSGCALTVVLNSIFNELLMRYCF FT KKIVPPLYKECFDRCVVLVTYGDDNVFTVAQSVMEHFTGDALKRQMAKIGVTITDGKDK FT SLSTIPARPLLELEFLKRGFKRSPGGHVGAPLEKLSIMSSLIYIRSDGSDLLQKLLDNV FT NTALVELYLHADREYFDSVRDFYLEKLPPGSYKELTTWFQAETFHECQRSGESGYKPQG FT LIEISHGAAFASFTQQAGTELEKHDICPGLSIAGAKYVANENEIVLTLSSKLPGDTNTF FT KLDLPCGDGIGRLPSKNSILALRKPGLVRNLCCLAQSGKKTLVIRDERPYIGAWAVACI FT CGESFGFGTQSVLALYANLLGPNRRNGLASYFSDFDSPVHIKRVHAKTNTKEGSEALKE FT IFPFCEVELYDATNADVGREVICNQPSTYPSVCLVGGISFPKEGGEPGALYSSADTVMA FT KQVPGVYESEVCLKCCERCIGVTTKVVTSTSVFANSMVKTHLKALRRVQSHMCPRR" FT mat_peptide 288..1535 FT /product="putative proteinase cofactor" FT mat_peptide 1536..3938 FT /product="putative helicase" FT mat_peptide 3939..4010 FT /product="VPg" FT mat_peptide 4011..4667 FT /product="proteinase" FT mat_peptide 4668..7139 FT /product="putative RNA-dependent RNA polymerase" XX SQ Sequence 7386 BP; 1981 A; 1456 C; 1883 G; 2066 T; 0 other; atgaaaattt tctacaagtt cctacgttac cgtgaattca gcttttcttg tgaagagttt 60 aagaaactca aagttgaatt tccttgcgaa gagtttaaga aactcacaaa gcgaagagtt 120 tgagaaactc accattgctt tttccacatt ttacatttcg ttttattttt gtttttgctc 180 ttattatttt tgtattgtta gacctttgta tacaaccttt tatctactta ttttcctgtg 240 ttatttgtgt tagtttaatt ttgtagtttt aggggttgtt tgccactatg tggcaggttt 300 ccgaaggatc ccagtgctgc tgcactggga aaaccttctc aaacgcggag gctaaggaac 360 tccgctacgt gtgctcatgt tggatgagca cacgtttagt taaggctgag gctcctcctc 420 agcaatcaag gaggagtggg atagcgccca ctcccctaaa atccaaaggg actgtacaag 480 tcccattccc aaaggttgtt ggggtaaagc ccaacgaccc aaaatccaaa ggagcttctg 540 tggctccaac acctttgttg aagcaaaggt gtgaagtggt agttcaatat ggccctccgg 600 ccgatattga acttgtatac ccgcctcttg tgcgggagga ggaaagatcc tccaagaaag 660 tggtcctgcc acctacccca aaggtggaaa tcagggtgcc agtgtgctgt gcacccaaat 720 ggatggtggc cattcctaaa ccaccggtga agctagccct taaagctagc aagttacggt 780 tcccaaaaag agccgtagct tataatggag tcaattttat tgattccagg ggaaaagtcg 840 tcctgtctga gggcgcaaag aggatcctga aagggattcg cgttgctact aagcaacgtc 900 tgagagctgc acgcagaatt gttgcgtgca ggaaggtgag agccgcgcga gctctcgcca 960 agtttgaggc aatcgctcag agtgagcgat tggaccagtt agaaactggg ttccaggtgg 1020 tgcttccggc accaaagatg agctgcagtc caaaaggggc tgctccttct accacctctg 1080 tggtggtagt taagaagagg aagcttgcta agcttcctaa ggctgtaccc gagcaggatt 1140 tttcctgctt ggtaggtttt gattgggggg agaaatccca cccaatcgag acggatatcg 1200 aggacgactg ggtcctcgtg gaaaaacctg tcctcttgag acaggctgca cacaccgtgc 1260 agggcagggc aaccgaggcc ttaactcggt ttgcggctac cagtggcttt tcactggatg 1320 cccaccaaaa ggtggaggat tttgcttcac ttggtgaagc agaatacttg atggcaggag 1380 agtttgcaga cctctgcttg caatccttgg tgtataatga tgcaccagta ctgtctgcaa 1440 ctatagcgga gctcaaggaa gataccgatt ttgctgatgc tatagaactc ctcaagttgg 1500 agctggctga gcttccaaca gactccacca cgtgtgcccc gtttaagcaa tgggcttctg 1560 ctgccaagca gatggccaaa ggtgctggcg cattggttgg ggattttgcc cgagctgcag 1620 gagctgctgc cgttatttct tttgatatgg cagtagagtt tttacaagac aaggcattga 1680 agttctgtaa aaagattttc gatgtcacga tggctcccta cttgcagcat cttgctagtg 1740 cccactccat tgtcaagaaa atatgggaaa agttgtctga gtggatggaa agcctcaaga 1800 gtaaagccag tttggcgctc gaggtcatgg cacaacacgc tatatttgct ttaggtgcca 1860 tggtcattgg tggggtagta gtgcttgttg agaaagtact ggttgctgct aagattattc 1920 caaattgtgg gattatttta ggtgctttct tgactctctt cttcgctagt ttgggattga 1980 cagcgttgga gtgcactgct gaagaaattt tcagactaca tgcgtgctgt aagagtgcta 2040 tttattccat gtattctgtg aatgagtcaa ccatggttgg ggaaggagag tccctaacca 2100 tgggagcagc atcagggctg gatactgctg tttcagccct tactcgaatt gggcagagta 2160 tgataagctt caagctcgga agcatgctat attatgctaa aattgcccag gggtttcgac 2220 caacttgcaa ggggaaaaaa gcaattggtg aactgactag ttggcttatc gatcttgttg 2280 ggagtatcta ctctacagtt actggacaag agagtacttt ctttgatgag ctttctacta 2340 tagtttgcct cgatgtaagg gcgtggttgc ttaaaagtaa acgcgttcgc ttgcaggtcg 2400 aaactatggc cgtgggtgat agaataacct tgaatactat tgccaaattg ctagaagacg 2460 gtcataagat tttagtaacg gcggctggcg taccaaggaa aatgtcagct gattttacaa 2520 tgtgcattaa agaggaagta tccaaattgg aagaagtaca tgcccgaaca gcatgtgcag 2580 gcatcaacga gggtatgcga gcttttcctt tttgggtgta catttatgga gcttcgcagt 2640 ctgggaaaac aacaattgcc aattccatca taatcccaga actgctagat gagatgaacc 2700 ttccaaaaag ctctgtttat tccaggccca aaactggtgg gttttggagt gggtatgcca 2760 ggcaagcgtg tgtgaaagtt gatgattttt acgccattga gcaaacgccc agcctagcaa 2820 gctccatgat cgacgtggtg aattccgagc cttacccgtt agatatggca tatattcatg 2880 agaagggtat gtcgatggat tctccgttgg ttgtgaccac tgcaaacacc gtggtacctc 2940 ctacaaattc acaagtggtg gatttgccat cattttacaa taggagggct gcggtgctgg 3000 aagttagaag gaaggatggg ggaattttcg atcctgaagc atatgactcg tgcattgaag 3060 ttcgcttcat gcatagtaaa tgcccctatg ttgactctgc cggtgttccc cagggacccg 3120 cagtcaatac ccccatggac gaaggatgga taaccccaag tgaagcagtt gcagtactga 3180 aaaacttgtt gggtgtacac gtcctaaatg aggagaaaaa gctgattgca tacagagaac 3240 ggattggaca tgatcatcca atctacaatg cagctaaaga attcataggt aatatgtatt 3300 atccaggaca gtggttaacc gctgaacaga agctaaccta tgaaattgat gacagtgagt 3360 tttctttcct agcagttgat ggaaaaatgt ataaatacaa tgcactaggg aagttacatc 3420 cttgtacatc aaaaccgtca catccaaatg tcatcccatg gctagaaaag aagacactcg 3480 aaatagtcca ctgggatgtg cacaagcata ttgctactgg tccccgtaat gcacttgtgg 3540 cttgtttcct acaaggcttt gtccaagggc agagcaaggt tgaaagtgtg gagcgcatgg 3600 gaaaagatag ttccccagag cagcagagtt tctttaggaa actaagttta tctgagagaa 3660 tatatcttag actgtgtcag atccgcattg acaatattaa acaggaagaa cttgtagggt 3720 caagtagagg accaatggca gtattgagag aatgcttgtt gaggagtaag caggtagttg 3780 ttgaaaacta ctcattgtta ttgacattgg tggcaattat cttacttatt agtgccgctt 3840 atacgctact ctcaacaatc gtggcattgg ctggatgctc aagctttgcg gggggcatgg 3900 tggctgttac tgcagtcaat agtgcttcca taccttgctc cgagccacga atggaagaaa 3960 gatatccccc gcggaatcgc ttcgtgtcgc gaatttccaa aattaggggg gaaggaccat 4020 cacagggcca aggagagcat gaggaattgg ttaccgaatt ctattactac agtgatggag 4080 ttaagaagct gatttcgaca tgttggttta agggaaggtc ccttctaatg acacgacatc 4140 aagccctggc agttccagta ggcacggaag ttgaaataat ttatgctgat ggaacggtta 4200 aaaaactggt ctggccaggc agacaggaag acggcaattg caagggcttc gtggaatttc 4260 cagagaatga gcttgtcgtc tttgagcacc cgcacctatt gacaatgccc attaaatacg 4320 agaagtattt tgtggacgat gccgatcgac aaatctcccc aaatgtagcg gtgaagtgtt 4380 gcgtggcgcg gttagaggat ggaattcccc aattccattt ctggaataaa tatgccaccg 4440 cacgtagcga aactcatacc ttgaaagatg agggaggggg aaatgtctac cagaacaaga 4500 taagacgttt cattgtctat gcccatgagg caaagaagta tgactgcggg gctctggctg 4560 tggctgtgat ccaaggcgtc ccaaaggtca tcgcgatgct tgtttctggt aatagaggtg 4620 tgacctattc ttccgtgatt ccagcttata gttcctccta tctcaggggg gatgtaccat 4680 atgtaccgga ggatgggata gttacaagtg gatataggaa agtgggttat ttgcataggt 4740 ctgatgctcc acatgtgccc tctaggacgg cgtttatgag agtaccagac gagttgtgtt 4800 ttccatatcc taatccaaag cagcctgcca ttcttagtac tgaagatgaa cgcctgaaag 4860 gtacagtcca tgaaggctat gatcctgtga aggatggcat gaaaaagttt gctgagccaa 4920 tgtctctgct agacgagaag ttactggatg aagtagcagg tgacatggtt cacacatggt 4980 atgatccggg cgaattcctt gaagatattt ctttggacca agctatcaat ggggatgaag 5040 aggaagaata ttttgactcc cttgtgatgg acacatctga aggatatccc gatgttttgg 5100 accggaaacc aggagaaaaa ggtaaggcga gatttttcgt tggggaacca ggaaatcgga 5160 tctttgtggc tggttgtaag cccgaaaagg cttattatca acttgaagag gattccaaaa 5220 ctagagtgcc tgctctagtt agcatagaaa ccccaaagga tgaaagactg aagagaagta 5280 aaatagacac cccaggaaca agattatttt ccgtgttgcc actggcgtat aatcttttgc 5340 ttagggtgaa gtttttgtct ttctctcgct tgctaatgaa aaagagaggc cacttgcctt 5400 gtcaagtagg catcaatcct tatagtcgtg aatggactga cctctaccac cgtttgggtg 5460 agttgtccga tgttggatac aattgcgact atagggcttt tgatggttta atcactgggc 5520 aaattttaag tgttattgct gacatgatta atgctggata tcgtgatcca attggtaatc 5580 agcaacgcaa aaatttgctt ctagctataa gtggacgcct ctctatttgt gggaatcagg 5640 tgtatgccac tgaagcaggc ataccctccg gttgtgctct cacagtagta ctaaattcca 5700 tatttaacga actactgatg agatattgct tcaaaaagat agttccccct ttgtacaagg 5760 agtgctttga caggtgcgtt gtgctcgtga cttatggtga tgacaatgtc ttcactgtag 5820 cgcagtctgt catggagcat tttactggcg acgctttaaa acgtcaaatg gccaaaattg 5880 gggttactat cactgatggg aaagataagt ctctttccac gattccggca cgcccgctgt 5940 tggagttgga atttctgaag cgcgggttca aaagaagtcc cggagggcac gtgggtgctc 6000 ctctagagaa attgtcaatc atgagttctc tgatttacat ccgtagtgat ggctctgact 6060 tgttgcagaa attgctagac aatgttaata ctgcgctagt tgagttgtat ctacacgctg 6120 atagagaata ttttgattca gtacgggact tctatttgga aaagctccct cctggttctt 6180 acaaagaatt gactacatgg tttcaagctg aaacatttca tgagtgtcaa aggagtggag 6240 agagtggcta caaaccacag gggcttattg aaattagtca tggggcggct tttgctagct 6300 tcacacaaca agctggcact gagttagaaa aacatgacat ctgccctggt ttgtctattg 6360 caggagctaa gtacgttgcc aacgagaatg aaattgtttt aacacttagc tccaagttgc 6420 ccggggacac aaatactttc aagctagatc ttccatgtgg tgatggaata ggacgtctac 6480 catcaaagaa tagtattcta gcattaagga aacccggctt ggttaggaat ttatgctgct 6540 tagcccaatc tggaaagaag accttagtca tacgtgatga gaggccttat attggcgcgt 6600 gggcagtagc ttgtatctgc ggggaaagtt ttggctttgg gactcagagt gttcttgcac 6660 tctatgctaa tttgttggga cctaatcgga gaaatgggct agctagttat ttttccgatt 6720 ttgacagtcc cgttcacatc aagcgagtcc atgctaaaac aaataccaag gagggtagcg 6780 aagctctgaa agagattttc cctttttgtg aggtggaact ctatgatgct accaacgcag 6840 atgttgggag ggaagttatt tgtaaccaac ctagcactta tcctagtgtt tgtttggtag 6900 ggggcattag ctttcctaag gaaggagggg aacctggagc attgtattcg agtgcagata 6960 ccgtgatggc aaaacaggtt ccgggggttt atgagagtga agtatgcctc aaatgttgtg 7020 aaagatgcat tggtgtcact actaaggtgg taactagcac cagtgttttc gctaacagca 7080 tggtaaaaac gcaccttaag gctctgaggc gagttcaaag tcatatgtgc cccaggaggt 7140 aatcctccaa ttcttggtac tgggataacc aagtataaat aacccggttt cttgcgcttt 7200 tcatgctctt taaggcgtca gaatattaga gcatttgtgt tataatttgt tttaacttgt 7260 ttactgcttt tgtgtgttta atttcatgct ttaagtggcg acagtgtgtt gtttgtcctt 7320 tggacacact tgctatgtcg gacgcaaaaa gatttttatt tctttttact gttttacatt 7380 tttaca 7386 //