ID HE603246; SV 1; circular; genomic DNA; STD; VRL; 2780 BP. XX AC HE603246; XX DT 12-DEC-2011 (Rel. 111, Created) DT 12-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, isolate New DE Caledonia:Ouvea:2010 XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RA Lett J.M.; RT ; RL Submitted (12-OCT-2011) to the INSDC. RL Lett J.M., CIRAD-BIOS-UMR PVBMT, Pole de Protection des Plantes, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Perefarres F., De Bruyn A., Kraberger S., Hoareau M., Barjon F., RA Lefeuvre P., Pellegrin F., Gallois R., Varsani A., Lett J.M.; RT "Occurrence of the Israel strain of Tomato yellow leaf curl virus in New RT Caledonia and Loyalty Islands"; RL Unpublished. XX DR MD5; c6bf230e00633b526b73bf7acefb6589. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato yellow leaf curl virus" FT /strain="Israel" FT /isolate="New Caledonia:Ouvea:2010" FT /mol_type="genomic DNA" FT /country="New Caledonia" FT /lat_lon="20.46 S 166.6 E" FT /isolation_source="Solanum lycopersicum" FT /collected_by="Frederic Perefarres" FT /collection_date="15-Dec-2010" FT /db_xref="taxon:10832" FT CDS 147..497 FT /gene="MP" FT /product="movement protein (MP)" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="CCE21608.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 307..1083 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:G8ZEE4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G8ZEE4" FT /protein_id="CCE21609.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDITRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLARDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1080..1484) FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:G8ZEE5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8ZEE5" FT /protein_id="CCE21610.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKTTEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVIETHDIKYKFY" FT CDS complement(1225..1632) FT /gene="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:A1KQQ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A1KQQ9" FT /protein_id="CCE21611.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1541..2614) FT /gene="Rep" FT /product="replication associated protein" FT /db_xref="GOA:G8ZEC3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8ZEC3" FT /protein_id="CCE21612.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEAALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLLSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYVLQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEGWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT CDS complement(2170..2463) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8ZEE8" FT /protein_id="CCE21613.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTYYPQTDQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2780 BP; 766 A; 536 C; 601 G; 877 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggtccata taagtcactg 60 tcaaccaatc aaattgcata ctcaaacgtt agataagtgt tcatttgtct ttatatactt 120 ggtccccaag tattttgtct tgcaatatgt gggacccact tctaaatgaa tttcctgaat 180 ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt 240 acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt gtaagggccc 300 gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgtctc gaaggttcgc 360 cgaaggctga acttcgacag cccatacagc agccgtgctg ctgtccccat tgtccaaggc 420 acaaacaagc gacgatcatg gacgtacagg cccatgtacc gaaagcccag aatatacaga 480 atgtatcgaa gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt ccagtcttat 540 gagcaacggg atgatattaa gcacactggt attgttcgtt gtgttagtga tattactcgt 600 ggatctggaa ttactcacag agtgggtaag aggttctgtg ttaaatcgat atatttttta 660 ggtaaagtct ggatggatga aaatatcaag aagcagaatc acactaatca ggtcatgttc 720 tttttggccc gtgatagaag gccctatgga agcagcccaa tggattttgg acaggttttt 780 aatatgttcg ataatgagcc cagtaccgca accgtgaaga atgatttgcg tgataggttt 840 caagtgatga gaaaatttca tgcaacagtt attggtgggc cctctggaat gaaagaacag 900 gcattagtta agagattttt taaaattaac agtcatgtaa cttataatca tcaggaggca 960 gccaagtacg agaaccatac tgaaaacgcc ttgttattgt atatggcatg tacgcatgcc 1020 tctaatccag tgtatgcaac tatgaaaata cgcatctatt tctatgattc aatatcaaat 1080 taataaaatt tatattttat atcatgagtt tctattacat ttattgtgtt ttcaagtaca 1140 tcatacaata catgatcaac tgctctgatt acattgttaa tggaaattac accaagacta 1200 tctaaatact taagaacttc atatctaaat actcttaaga aatgaccagt ctgaggctgt 1260 aatgtcgtcc aaattcggaa gttgagaaaa catttgtgaa tccccattac cttcctgatg 1320 ttgtggttga atcttatctg aatggaaatg atgtcgtggt tcattagaaa tggccgctgg 1380 ctgtgttctg ttgtcttgaa atagagggga ttgtttatct cccaaataaa aacgccattc 1440 tctgcctgag gagcagtgat gagttcccct gtgcgtgaat ccatgattgt tgcagttgag 1500 gtggaggtag tatgagcatc cacagtctag gtctacacgc ttacgcctta ttggtttctt 1560 cttggctatc ttgtgttgga ccttgattga tacttgcgaa cagtggctcg tagagggtga 1620 cgaaggttgc attcttgagc gcccaatttt tcaaggatat atttttttct tcgtctagat 1680 attccctata tgaggaggta ggtcctggat tgcagaggaa gatagttgga attccccctt 1740 taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctctgg gcccccatga 1800 attccttgaa gtgctttaaa taatgcgggt ctacgtcatc aatgacgttg taccacgcat 1860 cattactgta cacctttggg cttaggtcta gatgaccaca caaataatta tgtgggccta 1920 gagacctggc ccacattgtt ttgcctgttc tgctatcacc ctcaattaca atacttatgg 1980 gtctccatgg ccgcgcagcg gaagacacga cgttctcagc gacccaccct tcaagttcat 2040 ctggaacttg attaaaagaa gaagaaagaa atggagaaac ataaacttct aaaggaggac 2100 taaaaatcct atctaaattt gaacttaaat tatgaaattg taaaacatag tcctttgggg 2160 ccttctcttt taatatattg agggcctcgg atttattgcc tgaattgagt gcttcggcat 2220 atgcgtcgtt ggcagattgc tgacctcctc tagctgatct gccatcgatt tggaaaactc 2280 caaaatcaat gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag 2340 ctgcctgaat gttcggatgg aaatgtgctg atctgtttgg ggataatagg tcgaagaacc 2400 gttggttctt acattggtat ttgccttcga attggataag cacatggaga tgtggttccc 2460 cattctcgtg gagttctctg caaactttga tgtatttttt atttgttggg gtttctaggt 2520 tttttaattg ggaaagtgct gcctctttag agagagaaca attgggatat gttaggaaat 2580 aatttttggc atatatttta aataaacgag gcatgttgaa atgaatcggt gtccctcaaa 2640 gctctatggc aatcggtgta tcggtgtctt atttatacct ggacacctaa tggctatttg 2700 gtaatttcgt aaaagtacat tgcaattcaa aattcaaaat tcaaaaatca aatcattaaa 2760 gcggccatcc gtataatatt 2780 //