Dbfetch
ID HE584763; SV 1; linear; genomic RNA; STD; VRL; 1863 BP. XX AC HE584763; XX DT 23-FEB-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Pepper necrotic spot virus NSs gene for nonstructural protein and N gene DE for nucleocapsid protein, segment S, genomic RNA, strain T1 Pepper, isolate DE T1 XX KW . XX OS Pepper necrotic spot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-1863 RA Romero J.; RT ; RL Submitted (25-AUG-2011) to the INSDC. RL INIA, Proteccion Vegetal, Carretera de La Coruna Km. 7.0, Madrid, 28040, RL SPAIN. XX RN [2] RX DOI; 10.1007/s00705-011-1217-3. RX PUBMED; 22218966. RA Torres R., Larenas J., Fribourg C., Romero J.; RT "Pepper necrotic spot virus, a new tospovirus infecting solanaceous crops RT in Peru"; RL Arch. Virol. 157(4):609-615(2012). XX DR MD5; 22dcea5073513e142971f6397b3f6158. XX FH Key Location/Qualifiers FH FT source 1..1863 FT /organism="Pepper necrotic spot virus" FT /segment="S" FT /host="Capsicum annum" FT /strain="T1 Pepper" FT /isolate="T1" FT /mol_type="genomic RNA" FT /country="Peru:Arequipa, La Joya" FT /db_xref="taxon:1078947" FT CDS <2..424 FT /transl_table=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:H6S4T1" FT /protein_id="CCD31021.1" FT /translation="IVHDPSYPQRIVHALLETHTSFAQVLCNNLQEDVIIYTLNNHELT FT PAKLDLGDRTLNYSEDAYKKKYFLSKTLECLPVNTQTMSYLDSIQIPSWKIDFARGEIK FT ISPLAASFARSLLTLDLCGAGRKKSQLKEASKSESK" FT CDS complement(935..1711) FT /transl_table=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:H6S4T2" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:H6S4T2" FT /protein_id="CCD31022.1" FT /translation="MSKVKLTKENIIALLTQSAEVEFEEDQNQTAFNFKTFCHDNLDLL FT KKMNITSCLTFLKNRQSIMKVVKQSDFTFGKITIKKTSDRIGATDMTFRRLDSMIRVKL FT IEETANAENLLAIKTKIASHPLVQAYGLPLTDAKSVRLAIMLGGSIPLIASVDSFEMIS FT VVLAIYQDAKCKDLGIDPKKYDTKEAIGKVCTVLKSKGFVMEEAQVNKGKEYATILNSC FT NPNAKGSVAMEHYSDNLNKFYEMFGVKKEAKITGVA" XX SQ Sequence 1863 BP; 590 A; 347 C; 284 G; 642 T; 0 other; cattgttcat gacccatcat atcctcaaag gattgtccat gctttgcttg agactcacac 60 atctttcgct caggttcttt gcaacaactt gcaagaagat gtaattatct acacattgaa 120 caaccatgag ttgactcctg caaagttaga tttaggtgac agaaccctaa attacagtga 180 agatgcttat aagaagaaat atttcctttc aaaaactctt gagtgcctcc cagttaacac 240 acagaccatg tcttatctag acagtatcca gattccctca tggaagatcg actttgccag 300 aggagaaatt aaaatttctc ctctagctgc ttcttttgca aggtctttgc taacactgga 360 tctctgtgga gctggaagaa agaagtccca gctcaaagaa gcatctaaat cagaatcaaa 420 gtgatttatg ctgcattcaa tcacttttta tctgttttat ttaattttct ctttctttca 480 attttctttt atcttgtctt aaatctttct tgtttagtag gagttagaat aaagataaac 540 aaaaaaacaa aaaatcaata tataaaaaca aaaaacaaca aaaaaaatca aaaaataaaa 600 aaccaaaaaa gatcccgaaa gggacgattt tggccaaatt ggttttgttt ttgttttttg 660 ttttttgttt ttctcttttt attttgtttt atatattttt atttgttttt attttgtttt 720 tatttattta tttaatacag cacacacaaa agtaattcaa aattaaacac acttaagcaa 780 gctttaacac actttaacac acttaagcaa accttaacac actttaacac acttaggtaa 840 atttaataca ttttaacaca aacagacaac aacaaacaaa aaataaaaca ttagatatag 900 atatgcatct ttataatgtt gcttaaagca gcttttaagc aacacctgtg attttagctt 960 cttttttaac tccaaacatc tcatagaact tgttaagatt gtcactgtaa tgttccatag 1020 caacacttcc tttagcatta ggattgcatg agttgagtat agtagcatac tctttccctt 1080 tgttcacttg tgcttcctcc atcacgaagc ctttgctctt taacacagtg caaacttttc 1140 ctatagcttc tttagtatca tacttcttag gatcaattcc aagatccttg cattttgcat 1200 cttggtatat agctagaaca acactgatca tctcgaagct gtcaactgaa gcaataagag 1260 ggatgctacc tccaagcatt atagcaagtc tcactgattt tgcatcagtc aaaggcagtc 1320 cataagcttg aaccaaaggg tgagaggcaa tttttgtttt gatagcaagc agattttcgg 1380 cattagcagt ttcttcaata agcttgactc ttatcatgct atcaagcctt ctaaaagtca 1440 tatcagtagc tcctatcctg tctgaagtct ttttgatagt gattttacca aaggtaaaat 1500 cactttgctt gaccaccttc atgatactct gacggttttt caggaatgtc aagcatgaag 1560 ttatgttcat cttcttgagc aggtcaagat tatcatggca gaaagttttg aagttgaatg 1620 cagtttgatt ctgatcttct tcaaattcaa cttctgccga ttgggtcaac aaggcaatga 1680 tattttcctt tgtcaattta accttagaca tgatggctga agaagatttg gtgtgctttc 1740 aatatatgca atttagggta agaaagtgca actctgtatc ccgtgatcac ttcttattct 1800 actaatgtga tgatttgtaa gactgagtgc tgaggttttg aataaaattg acacaattgc 1860 tct 1863 //