ID HE584762; SV 1; linear; genomic RNA; STD; VRL; 2949 BP. XX AC HE584762; XX DT 23-FEB-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Pepper necrotic spot virus complete segment S, genomic RNA, strain T2 DE tomato, isolate T2 XX KW complete viral segment. XX OS Pepper necrotic spot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-2949 RA Romero J.; RT ; RL Submitted (25-AUG-2011) to the INSDC. RL INIA, Proteccion Vegetal, Carretera de La Coruna Km. 7.0, Madrid, 28040, RL SPAIN. XX RN [2] RX DOI; 10.1007/s00705-011-1217-3. RX PUBMED; 22218966. RA Torres R., Larenas J., Fribourg C., Romero J.; RT "Pepper necrotic spot virus, a new tospovirus infecting solanaceous crops RT in Peru"; RL Arch. Virol. 157(4):609-615(2012). XX DR MD5; fb8813b30facad4b411bafd506e4fa13. DR EuropePMC; PMC5234141; 28081705. XX FH Key Location/Qualifiers FH FT source 1..2949 FT /organism="Pepper necrotic spot virus" FT /segment="S" FT /host="Solanum licopersicum" FT /strain="T2 tomato" FT /isolate="T2" FT /mol_type="genomic RNA" FT /country="Peru:Arequipa, La Joya" FT /db_xref="taxon:1078947" FT CDS 88..1491 FT /transl_table=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:H6S4S9" FT /protein_id="CCD31019.1" FT /translation="MPTSVYDSIIQTRASVWGSTASGKSIVDSYWIYELSTGSSLVQTQ FT LYSDSRSKSSFGYTTRVGNLPSEEKEILSQNVYIPVFDDIDFNINIDDSFLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIESTMSRSDITDRFQLQEKDIIPDDRYIEAANKGSLS FT CVKEHVYKVEMCNNQALGKVNVLSPNRNVHEWLYSFKPIFNQIESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRIPKVLKQIAIQKFFTVAGDETGKSFYLSI FT ACIPNHNSVETALNVTVICKHQLPITKLKAPFELSMMFSDLKEPYNIVHDPSYPQRIVQ FT ALLETHTSFAQVLCNNPQEDVIIYTLNKHELTPAKLDLGDKTLNYSEDAYKKKYFLSKT FT LECLPANTQTMSYLDSIQIPSWKIDFARGEIKISPLAVSVTRSLLTLDLSGAEKKKSQL FT EEASKLESK" FT CDS complement(2021..2797) FT /transl_table=1 FT /gene="N" FT /product="nucleocapsid protein protein" FT /db_xref="GOA:H6S4T0" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:H6S4T0" FT /protein_id="CCD31020.1" FT /translation="MSKVKLTKENIIALLTQSAEVEFEEDQNQTAFNFKTFCHDNLDLL FT KKMNITSCLTFLKNRQSIMKVVKQIDFTFGKITIKKTSERIGATDMTFRRLDSMIRVKL FT IEETANAENLLAIKTKIASHPLVQAYGLPLTDAKSVRLAIMLGGSIPLIASVDSFEMIS FT IVLAIYQDAKCKDLGIDPKKYDTKEAIGKVCTVLKSKGFLMDESQVNKGKEYATILNSC FT NPNAKGSVAMEYYSDNLNKFYEMFGVKKEAKIAGVA" XX SQ Sequence 2949 BP; 932 A; 552 C; 474 G; 991 T; 0 other; agagcaattg tgtcacattt tattcttaat caaaccacaa ttaacaaatc tcaaatctgt 60 aataagcaca atagcacaat agccacaatg ccaacaagtg tctatgattc gatcattcag 120 acaagagctt cagtctgggg atctacagca tctggtaagt ctattgtgga ttcttactgg 180 atttatgagc tttcaactgg ttcatcacta gttcaaacac agttgtattc tgattcaagg 240 agcaaaagca gctttggata taccacacga gttggtaatc ttccttcaga agagaaagag 300 attttatctc agaatgtgta tatccctgtt tttgatgata ttgattttaa tattaatatt 360 gatgattcat ttttggcctt atctgtttgc tctaatacgg ttaatactaa tggagtgaaa 420 caccaaggtc atcttaaggt tctatctcct gctcaattgc attctataga gtctacaatg 480 agtcggtctg acattactga cagattccag ctccaagaga aagacataat tcccgacgac 540 agatatatcg aagctgctaa caaaggctct ctttcctgtg ttaaagaaca tgtttacaag 600 gtcgagatgt gcaacaatca agcattaggg aaagtgaatg ttttatctcc taatagaaat 660 gttcatgagt ggctttatag tttcaagcca attttcaatc aaattgaaag taacaacaga 720 actgtgaact ctcttgcagt gaaatctctg ctaatgtctg cagaaaacaa cataatgcct 780 aattcccaag cctttgtcaa agcttcgaca gattctcact ttaagttgag cctctggttg 840 agaattccaa aggttttgaa gcaaattgca atccagaaat tttttacagt tgctggagac 900 gaaacaggaa aaagttttta cttatccatt gcttgcatcc caaaccacaa cagtgttgaa 960 acagccttga atgtgactgt tatctgcaag catcagcttc caatcacaaa acttaaagct 1020 ccttttgaat tatcgatgat gttttctgac ctgaaagaac cttacaacat tgttcatgat 1080 ccatcatatc cccaaaggat tgtccaagct ttgcttgaga ctcatacatc ttttgctcaa 1140 gttctttgca acaaccctca agaagatgtg attatctaca cattgaacaa acatgagttg 1200 actcctgcaa agttagattt aggtgacaaa accctgaatt acagtgaaga tgcttataag 1260 aagaaatatt tcctttcaaa aactcttgaa tgcctcccag ctaacacaca gaccatgtct 1320 tatctagaca gtatccagat tccctcatgg aagatcgatt ttgccagagg agaaattaaa 1380 atttctcctc tagctgtctc tgttacaagg tctttgctaa cactggatct cagtggagct 1440 gaaaaaaaga agtcccagct cgaggaagca tccaaactag aatctaagtg atttatgctg 1500 cattcaatca cttttgtctg ttttatttaa atttctcttt cttcaatttt ctttatcttg 1560 tcgtaaattt ttctagttta gtaggagcta gaacaaagta aacaagaaaa atatcaatat 1620 gtaaaacaaa aaacaacaaa aataaaaaac aacaaaaaat caaacaaaaa accaaaaaag 1680 atcctgaaaa ggacgatttt ggccaaattg gttttgtttt tgttgttttt tgttttctat 1740 ttttattttg ttttatatat attttttgtt tattttattt tgtttgtttt ttgtttttgt 1800 ttctttttga ttttgtttat atatttttat ttgtttttat ttgtttaata caacacacat 1860 tttagcaaac tttagcacac tttaacacac ttaagcaaac tttaacacac tttaacacac 1920 ttaggcaaat tttaacatgc tttaatacaa acagacaaca acaaacaaga aataaacatt 1980 atatatatat gcatctttat aatgttgctt aaagcagctt ttaagcaaca cctgcaattt 2040 ttgcttcttt cttaactcca aacatctcat agaacttgtt aagattgtca ctataatatt 2100 ccatagcaac acttccttta gcattaggat tgcatgaatt gagtatagta gcatactctt 2160 tccccttgtt cacctgcgat tcatccatca gaaagccttt gctctttaac acagtgcaaa 2220 cttttcctat agcttcttta gtatcatact ttttaggatc aattccaaga tccttgcatt 2280 ttgcatcttg gtatatagcc aaaacaatac tgatcatttc gaagctgtca actgaagcaa 2340 taagaggaat gctacctccg agcattatgg caagcctcac cgattttgcg tcagttaaag 2400 gcagcccata agcttggacc aaggggtggg aggcaatttt tgttttgata gcaagcagat 2460 tttcggcatt agcagtttct tcaataagct tgactcttat catgctatca agccttctaa 2520 aagtcatatc agtagctcct atcctttccg aagttttttt gatagtgatt ttaccaaagg 2580 taaaatcaat ttgcttgacc accttcatga tactctgacg gtttttcaag aatgtcaagc 2640 atgaggttat gttcatcttc tttagcaagt caagattatc atggcagaaa gttttgaagt 2700 tgaatgcagt ttgattctga tcttcctcaa attcaacttc tgcagattgg gtcaacaaag 2760 caataatatt ttcctttgtc aacttaacct tagacatgat ggctgaagaa gatctggttt 2820 gttctcaaga gatgtgattt agggtaagaa agtgcaactc tgtataccgt agtcacttct 2880 tatcctacta atgtgatgat ctgtaagagt gagtgctgag gttttgaata aaattgacac 2940 aattgctct 2949 //