ID   HE583224; SV 2; linear; genomic RNA; STD; VRL; 2206 BP.
XX
AC   HE583224;
XX
DT   18-OCT-2011 (Rel. 110, Created)
DT   24-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Cucumber mosaic virus 3a gene for movement protein and cp gene for coat
DE   protein, segment RNA-3, isolate Palampur, genomic RNA
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RC   revised by [3]
RA   Kumari R.;
RT   ;
RL   Submitted (18-AUG-2011) to the INSDC.
RL   Kumari R., Institute of Himalayan Bioresource, Technology (CSIR),
RL   Floriculture Division, P.O. Box 6, Palampur, Himachal Pradesh 176061,
RL   INDIA.
XX
RN   [2]
RA   Kumari R., Bhardwaj P., Singh L., Hallan V., Zaidi A.A.;
RT   "Molecular characterization of Cucumber mosaic virus isolate Palamur";
RL   Unpublished.
XX
RN   [3]
RP   1-2206
RA   Kumari R.;
RT   ;
RL   Submitted (24-MAY-2012) to the INSDC.
RL   Kumari R., Institute of Himalayan Bioresource, Technology (CSIR),
RL   Floriculture Division, P.O. Box 6, Palampur, Himachal Pradesh 176061,
RL   INDIA.
XX
DR   MD5; 72667608a5803b6a1b1f92abc2060af2.
DR   EuropePMC; PMC3650197; 24426254.
DR   EuropePMC; PMC5036820; 27668429.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2206
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA-3"
FT                   /host="Cucumis sativus"
FT                   /isolate="Palampur"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Palampur"
FT                   /isolation_source="Nicotiana glutinosa leaf"
FT                   /collected_by="Reenu kumari"
FT                   /identified_by="Reenu kumari"
FT                   /PCR_primers="fwd_name: RNA3F, fwd_seq:
FT                   gtaatcttaccactttcttt, rev_name: RNA3R, rev_seq:
FT                   tggtctccttatggagaacctg"
FT                   /db_xref="taxon:12305"
FT   CDS             97..936
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:G4V4I5"
FT                   /protein_id="CCD28583.1"
FT                   /translation="MAFQGPSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLSRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMELVGNRHRCYAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILSESPPIAIGSPSASRNNSFRSQVVNGL"
FT   CDS             1232..1888
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G4V4I6"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:G4V4I6"
FT                   /protein_id="CCD28584.1"
FT                   /translation="MDKSGSPNAGRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SHIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2206 BP; 498 A; 517 C; 526 G; 665 T; 0 other;
     gtaatcttac cactttcttt tcacgtcgtg tcgcgtcagt ccacgctgtg tgtgtgtgtg        60
     tgttggttag tgtgtcgtgt ttagattacg aaggttatgg ctttccaagg tcccagtagg       120
     acgttaactc aacagtcctc ggcggcgtcg tctgacgact tacagaagat attattcagc       180
     cccgatgcca tcaagaagat ggctactgag tgtgacctaa gtcgacatca ttggatgcgc       240
     gcggataacg ccatctctgt cagacctctc gttccccaag taaccagtaa caatttattg       300
     tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta tatgagcgtt       360
     cctcaagtac tgtgtgccgt taccaggacg gtttctacgg atgctgaggg ttctttgaaa       420
     atttatttgg ctgacctagg tgataaagaa ttatccccaa ttgatgggca gtgtgttact       480
     ttacataatc atgagctccc tgctttgata tctttccaac ctacctacga ttgccccatg       540
     gaattagttg gcaatcggca tcgatgttac gcggtagtcg ttgagagaca tggttatatt       600
     ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt ttcttcaaag       660
     aataataatt atacacacgc cgctgctggt aagactcttg tgttgcctta caacagatta       720
     gctgagcatt cgaaaccgtc agccgtcgct cgcctgttga agtcgcagtt aaacaacgtt       780
     agctcatcgc gctatctttt gccgaacgtt gctcttaatc aaaatgcgtc tgggcacgag       840
     tccgagattt taagcgaaag ccctcccatc gctataggga gtccgtccgc gtcccgtaac       900
     aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt gtacctatgt       960
     atatatatac tacgtttatc ttccgtatgt aaatacatgt gagtctagag tccgtgtgag      1020
     ttgtaacggt agacatctgt gacgcgaagc cgcctgaaga tttcccatct ggggttagta      1080
     agtccacatc acagttttaa ggttcaattc cttttgctcc ctgttgggcc cccttacttt      1140
     ctcatggatg cttctccgcg agttagcgtt tagttgttca cctgagtcgt tagcgttttt      1200
     cttcacttga gtcttgcgtc ttagtgtgcc tatggacaaa tctggatctc ccaatgctgg      1260
     tagaacctcc cggcgtcgtc gcccgcgtag aggttctcgg tccgcttctg gtgcggatgc      1320
     agggttgcgt gccttgactc agcagatgct gagactcaat aaaaccctcg ccattggtcg      1380
     tcccactctt aaccacccaa ccttcgtggg tagtgaaagt tgtaaacccg gttacacttt      1440
     cacatctatt accctgaaac cgcctgaaat tgagaaaggt tcatattttg gtagaaggtt      1500
     gtctttgcca gattcagtca cggactatga taagaagctt gtttcgcaca ttcaaatcag      1560
     gattaatcct ttgccgaaat ttgattctac cgtgtgggtt acagttcgga aagtaccttc      1620
     atcatccgat ctttccgtcg ccgccatctc tgctatgttt ggcgatggta attcaccggt      1680
     tttggtttat cagtatgctg cgtccggagt tcaggccaac aataagttac tttatgacct      1740
     gtccgagatg cgtgctgata tcggcgacat gcgtaagtac gccgtcctgg tttattcgaa      1800
     ggacgataaa ctagagaagg acgagattgt acttcatgtc gacgtcgagc atcaacgaat      1860
     tcctatctct cggatgctcc cgacttagtc cgtgtttacc ggcgtccgaa gacgttaaac      1920
     tacactctca atcgcgagtg ctgagttggt agtattgcta caaactgcct gaagtcccta      1980
     aacgtgttgt tgcgcgggga acgggttgtc catccagctt acggctaaaa tggtcagtcg      2040
     tgtctttaca cgccgatgtc ttacaagatg tcgaggtacc cttgaaatca tctcctggat      2100
     ttcttcggaa gggcttcgtg agaagctcgt gcacggtaat acactgatat taccaagagt      2160
     gcgggtatcg cctgtggttt tccacaggtt ctccataagg agacca                     2206
//