ID HE582004; SV 1; linear; genomic RNA; STD; VRL; 5324 BP. XX AC HE582004; XX DT 11-SEP-2011 (Rel. 110, Created) DT 30-NOV-2011 (Rel. 110, Last updated, Version 2) XX DE Black raspberry necrosis virus partial gene for polyprotein, segment RNA1, DE isolate FI:Hau26B:09 XX KW . XX OS Black raspberry necrosis virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Secoviridae; unassigned Secoviridae. XX RN [1] RP 1-5324 RA Artola K.; RT ; RL Submitted (10-MAR-2011) to the INSDC. RL Artola K., Department of Agricultural Sciences, University of Helsinki, PO RL box 27, 00014, FINLAND. XX RN [2] RA Susi H., Rajamaeki M.L., Valkonen J.P.; RT "Deep sequencing as a detection method for viruses on wild raspberries"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..5324 FT /organism="Black raspberry necrosis virus" FT /segment="RNA1" FT /host="Rubus idaeus" FT /isolate="FI:Hau26B:09" FT /mol_type="genomic RNA" FT /country="Finland" FT /db_xref="taxon:367301" FT CDS <1..>1820 FT /product="polyprotein" FT /db_xref="UniProtKB/TrEMBL:G3CBK1" FT /protein_id="CCD28090.1" FT /translation="GLADPDAFRRRRHVCVEVFKNDNLPFRPEEPYYNQMFQLRNPLRP FT KDPLVYIDEAGHQQPYPRMTYGELCLYVAEKSAEHFDKEAKSLKFMRKAQGLADEEEFM FT QEGPLTDFHGSLVISPKAISEISMPHFHNADDNHQIHGCVNHKVFCCSIFGTKCDVEHT FT AAEISYVKMIQDDIHPHAYSTNLAVSLAQSDRTLWDVKGFRKMVKRIKGYGIDDVPEPV FT DEQTRNFVRQAWREFSDRDRFLIYRYFEINDTLKQKALAKVATIKEEIKSWSVAGCWNA FT MPMGVKWMIGVIALFSFGCVLVDFLHTIMSMRSWSPVDILGNVLGATGAFGVLAFTSEG FT GSYAGSGVNIEATKYRDKRIKPYSQGGDGSGANFTYNELESIEAIKKGQYLLSYSNTCG FT LSGVAAVFMYKDHSFLISVHEADWINYNKTCYMVGRDGTSREVSLAASGVKKITRDGFI FT EPVCSIDILPTTPVGKASSQSVWYDFHKTNEGRKVGVIVPNNRKDMAQECTKVHFRRNK FT EKTDCFNFPGSKGSWSAHDLLHAKAPHGNGMCGRLLLAHGPAGNLLVVGLHVSGGGLNE FT RATSIFGGIDSSYKDTEDGKFYQQGELDIH" FT mat_peptide <1..1017 FT /product="helicase" FT mat_peptide 1018..1096 FT /product="VPg" FT mat_peptide 1097..1797 FT /product="protease" FT gap 1821..2930 FT /estimated_length=1110 FT CDS <2931..4449 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:G3CBK2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR005123" FT /db_xref="UniProtKB/TrEMBL:G3CBK2" FT /protein_id="CCD28091.1" FT /translation="VTYRIMRSHCTFSVYGDDNVVSFSLAVRDMYNLCTIADELKTIGV FT TLSDGKKTGVLIKWSEFKDLDFLKRRWELEPGHGFKCPLDKMAIEERLFWVRKSEDNME FT SLDDNCYSALMEAFHHGPEYFHDLREKILDGYQSAGLETPILLHYQEARSIWFEQHKVG FT AESDFFAGVQNHLLPSIVGKDVIRTISTTIDWSSIRKYNEAFASGKYTRTKIFLDPLAK FT EIVWLKSKSGPHLSIPAALNKETFQSVIEGVNKVAPGEICVVDGRGDKSGLVVALSLAM FT DRGEISQAQGHNMLLALVTTNKEVEYGLQLFNTLAATSRPSVSLEPKFTTPPTELVKGV FT VGVEIYEVANWVKKLPFGSVGPTLKGRMALFFSEGKFDYAHDKYHYTSQGWPEEVMRLA FT ERLGGFNSCLVQKYDKGAYIPFHSDDESCYNMDDSIVTVNLDGRATFIVRNKTTNKECR FT NELYHGSIIEMLPGCQKLCKHSVVVKDQGRISLTFRRQRRTMKGSPL" FT mat_peptide <2931..4446 FT /product="RNA-dependent RNA polymerase" XX SQ Sequence 5324 BP; 1162 A; 865 C; 1104 G; 1083 T; 1110 other; ggtttggctg atcctgatgc gttcagaagg aggcgacatg tctgtgtgga agtattcaag 60 aacgataact taccgtttag accagaggag ccgtactaca accagatgtt tcagctacgg 120 aacccactga ggccaaaaga tccactggtg tacattgatg aggccggtca tcaacaacct 180 tatcccagga tgacctacgg ggagctatgt ctttatgtgg cagagaagtc ggccgaacat 240 ttcgataagg aggccaaatc tttgaaattc atgcgtaagg ctcagggttt ggctgacgag 300 gaggaattta tgcaagaggg cccactgact gacttccatg gtagtttggt aatatcgccg 360 aaagccatat ctgaaatttc catgcctcat ttccacaatg ctgatgacaa tcaccagatc 420 catgggtgtg tgaatcacaa ggttttctgc tgctctatct ttgggaccaa atgcgatgtt 480 gaacacactg cagctgagat cagttacgtg aagatgatcc aagacgatat ccacccgcat 540 gcttattcaa ctaatctggc ggtgagcctg gctcagagtg accggacatt gtgggatgtc 600 aaaggttttc gcaaaatggt caagagaatt aagggctatg gaattgacga tgtacccgaa 660 cctgtggatg agcaaaccag gaattttgtg cgacaagcct ggagagaatt ctctgaccga 720 gacaggtttc tcatctatag gtactttgag atcaatgata cgctcaaaca gaaggcctta 780 gcaaaggttg ctaccatcaa agaggagatc aaatcgtgga gcgttgctgg ttgctggaat 840 gctatgccca tgggagttaa gtggatgatc ggagtcatcg ccctgttttc atttgggtgc 900 gtgctagtgg atttcttgca cacaataatg tctatgcgct cctggagtcc ggtggacata 960 cttggcaacg ttcttggagc gaccggcgct tttggggtac tagctttcac atctgaaggc 1020 ggttcttatg ctggctcagg tgtcaatatc gaagccacaa agtacaggga caagaggatc 1080 aaaccgtatt cccaaggagg tgatggatct ggggcgaatt tcacttacaa tgaactggaa 1140 tctatagagg ccatcaagaa agggcaatac ttgctgtctt atagcaatac atgtgggcta 1200 agtggagtgg ctgcagtttt catgtacaag gaccattctt ttctcatctc cgttcatgaa 1260 gccgactgga tcaattacaa taagacctgc tatatggttg gtagggacgg gacttctaga 1320 gaggtgagtt tggctgcttc cggtgttaag aaaatcacca gggatggttt catagagcct 1380 gtttgctcaa ttgacattct acccactact ccagtcggaa aagccagctc tcaatcagtg 1440 tggtatgatt tccacaaaac caatgaggga aggaaggttg gcgtgatcgt gcccaacaac 1500 aggaaggaca tggcacagga gtgcacaaag gttcacttca gaaggaacaa ggaaaagacc 1560 gattgtttca attttcctgg tagcaagggt agctggtcgg cccatgattt gttacacgcc 1620 aaagctccac acggcaatgg aatgtgtggt agattgttgc ttgcacatgg tccagccggt 1680 aatctgctcg tggtgggcct acatgtgagt ggaggaggat tgaatgagag agccactagc 1740 atcttcggtg gcatcgacag ctcatataag gacacagagg atgggaaatt ctatcaacaa 1800 ggtgaactgg atatccacat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1860 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1920 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1980 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2040 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2220 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2340 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2400 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2520 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2580 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2640 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2700 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2760 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2820 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggtcacttac 2940 aggatcatga gatcccactg cactttttcg gtctatggtg atgacaatgt tgtttctttc 3000 agcctggctg ttagggacat gtacaatctg tgtaccattg ctgatgagct taagacaata 3060 ggagtgacat tgtccgatgg aaagaaaact ggagtgctca tcaagtggtc cgaattcaag 3120 gatctggatt ttctgaagcg gaggtgggaa ttggaacccg gccatggttt caaatgtcct 3180 ctcgataaaa tggcgataga ggagaggttg ttctgggtga ggaaatcgga agacaacatg 3240 gaatctctgg atgacaactg ttactcagca ctcatggagg ctttccacca tgggcctgag 3300 tatttccatg atttgagaga gaaaatcctt gacggatatc aatcagctgg cttggaaact 3360 ccaattttgc tacattatca ggaggccagg tcaatatggt ttgaacagca caaagtcggg 3420 gccgaatcag atttctttgc tggggttcag aatcacttgt tacctagcat agttggaaag 3480 gacgtgatca ggacaattag taccactatt gactggagct ctataaggaa atataatgaa 3540 gcctttgcta gtggtaaata cacgagaacc aagatctttc ttgacccatt ggcgaaggaa 3600 attgtctggc tcaagtccaa aagtggtcct cacctgagca taccggcagc gctcaataag 3660 gaaacattcc aatcggtcat agagggagtg aataaagtgg ctcctggtga gatatgtgtg 3720 gttgatggta gaggagataa atccgggtta gtggtggctc tttcactagc tatggatagg 3780 ggagaaatta gtcaggcaca aggtcacaat atgttgcttg cacttgtcac cacaaacaag 3840 gaggtggaat atggattgca attgtttaac actctggctg ccaccagcag accctctgtt 3900 tcactagaac cgaaatttac caccccaccg actgagcttg tcaaaggagt ggtcggagtg 3960 gaaatctatg aagtggccaa ttgggtgaaa aagcttcctt ttggtagcgt gggtccaaca 4020 ctgaaaggga ggatggcatt gtttttctcg gaagggaagt tcgactacgc ccatgacaag 4080 taccattaca catcgcaagg atggcctgag gaagtgatga gattggctga gcgtctcggc 4140 ggattcaatt cctgccttgt gcaaaaatac gataaagggg catacatacc attccactct 4200 gatgacgagt cttgttacaa catggatgat tccatagtca cagtgaacct ggatgggaga 4260 gctactttta tagtgagaaa taaaacgacc aataaggaat gcaggaatga attgtaccat 4320 ggatcgatta tcgaaatgct ccctggatgt caaaaattgt gtaaacactc agttgttgtg 4380 aaagatcaag gacgtattag tttaaccttc aggcggcaga gaaggacgat gaaaggctcc 4440 ccactctgag tgcgtgttca gttttggacc aaactataaa tggtaaccgg ttccccccct 4500 gccttaaagg ggttcacaag gataatgtct ggtggaccac ccgttcttcg ttgaatgggc 4560 cacttggtgt acgtcagact taaatgatct ggcggtccta tcatattcca ggaattaacc 4620 tggtttaggg gcaacccgta tgtagccttg aatagacgag gcaaatagct ctgcacgctg 4680 ctatcaaaat aaggatcgtg tgcccagtcc cggttagaag gacacccaca tttcatagga 4740 ctagtaccaa ttgggaggaa gggtaaggag tattcatccg tgtaacgctc tgtgaactga 4800 atccccatac tgagaaggtc tgaacttttt gtggtaagtt tgttggaact ttaaaccaat 4860 agcccaaccc cggttagaag ggtcgagtgg ttctacgtta gtgaaccaga acctcgggag 4920 agttttccta ggatccagac cgaattctgg cagcttgcac ggcaagatac actgtagagt 4980 ggaggcttga taaccctcct gcagtaggca aggcaatggc ttttctgtcg gtggtagcgt 5040 cccggccctt gtttatgttc gcccgatcag tgaaaggccg attcgtgtat cgttaaacac 5100 gaaatcggga gatttatcct aggatccaga ccgaattctg gcagtttgca tggcaagacg 5160 ataccaaata tcgcaaattt ggaaactggg aagtcggccc agtgtaaata ccgacccttg 5220 ttggcagcaa ttttctgtca agtatggcgc gcttttgtgc cacaaaatgg acacttgtcc 5280 acaaaaagat tttacttagt tgtaatgtca ctaatttcct gccg 5324 //