ID   HE580234; SV 1; circular; genomic DNA; STD; VRL; 2754 BP.
XX
AC   HE580234;
XX
DT   15-AUG-2011 (Rel. 109, Created)
DT   28-JAN-2013 (Rel. 115, Last updated, Version 3)
XX
DE   Catharanthus yellow mosaic virus complete genome, clone KN4
XX
KW   complete genome.
XX
OS   Catharanthus yellow mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2754
RA   Ilyas M.;
RT   ;
RL   Submitted (13-AUG-2011) to the INSDC.
RL   Ilyas M., School of Biological Sciences, University of the Punjab (New
RL   Campus), 54590, PAKISTAN.
XX
RN   [2]
RX   DOI; 10.1007/s00705-012-1498-1.
RX   PUBMED; 23065111.
RA   Ilyas M., Nawaz K., Shafiq M., Haider M.S., Shahid A.A.;
RT   "Complete nucleotide sequences of two begomoviruses infecting Madagascar
RT   periwinkle (Catharanthus roseus) from Pakistan";
RL   Arch. Virol. 158(2):505-510(2013).
XX
DR   MD5; 11284617737b44bb5de25f4c9ac3f16a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2754
FT                   /organism="Catharanthus yellow mosaic virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Lahore"
FT                   /isolation_source="Catharanthus roseus leaf"
FT                   /collected_by="Kiran Nawaz"
FT                   /clone="KN4"
FT                   /db_xref="taxon:1076345"
FT   CDS             145..510
FT                   /gene="av2"
FT                   /product="AV2 protein"
FT                   /db_xref="GOA:G0W2Z8"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:G0W2Z8"
FT                   /protein_id="CCD22073.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT                   ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICEPCCCPHCPRHKGKGMGEQAHEQ
FT                   KAQDVQDVQKSRCSEGM"
FT   CDS             305..1075
FT                   /gene="av1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G0W2Z9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G0W2Z9"
FT                   /protein_id="CCD22074.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIEHIGKVMCVSDVTRGVGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(1072..1476)
FT                   /gene="ac3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:G0W2Z5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:G0W2Z5"
FT                   /protein_id="CCD22075.1"
FT                   /translation="MDSRTGEPITAAQAENGVYIWEIQNPLYFKITEHHNRPFLMNHDI
FT                   INIRVQFNHNLRKRLGIMKCFLGLRIHTRLHPQTGHFLRVFKTQVLRYLDSLGVISINN
FT                   CIRTFRHVLYDVLEGTINVIEHHDIKFNIY"
FT   CDS             complement(1217..1624)
FT                   /gene="ac2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G0W2Z6"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G0W2Z6"
FT                   /protein_id="CCD22076.1"
FT                   /translation="MRPSSPSKAHSTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDNRTPQQAIPNEPRHHQHQGPVQSQ
FT                   PQEETGDNEVFLGLEDPHSFTSSDWAFLKSL"
FT   CDS             complement(1554..2612)
FT                   /gene="ac1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:G0W302"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:G0W302"
FT                   /protein_id="CCD22077.1"
FT                   /translation="MPRTHQFQVKAKNIFLTYPKCPLPKEQMLELLKNISCPSDKLFIR
FT                   VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYI
FT                   EKDGDYIDWGEFQIDGRSARGGQQTANDAAAEALNASSADAALAIIREKLPKDFIFQYH
FT                   NLKCNLDRIFRPPVEVYVSPFSASSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEGPL
FT                   YSGSNQGPTQSC"
XX
SQ   Sequence 2754 BP; 738 A; 558 C; 641 G; 817 T; 0 other;
     accggatggc cgcgattttt tttgtgggac ccacaaagca ctaactgaca atgacatatg        60
     gaccaatgag aatcgttccc catagtctca ttgttttgtg gtccccctat aaacttagtg       120
     cgcaagtttt gcttcgcatt cacaatgtgg gacccactat tgaatgagtt tccagaaact       180
     gttcacgggt ttaggtgcat gttggcaatt aaatatttgc agttagtaga aaatacgtat       240
     tccccagata ctctgggata cgatttaatt agggatttga tttcagttat tagggctagg       300
     aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg       360
     ccgtctcaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac       420
     aaaggcaagg gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatgta       480
     cagaagtcca gatgttccga ggggatgtga aggcccatgc aaggtccagt catttgagtc       540
     cagacatgat atcgagcaca ttgggaaagt catgtgtgtt agtgatgtta ctcgtggtgt       600
     tggactgacc cacagggttg gcaagaggtt ctgtgttaag tccgtttatg ttctgggcaa       660
     gatctggatg gatgagaaca tcaagactaa gaatcatacg aatagtgtta tgttttttct       720
     tgttagggat cgtaggcctg ttgataagcc tcaagatttt ggtgaggttt ttaacatgtt       780
     tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgatagat accaggtatt       840
     aaggaagtgg cacgcaactg tgacaggcgg tctatacgca tcgaaggagc aggctctcgt       900
     gaagaagttt attagggtca ataattatgt tgtgtacaac cagcaagagg ctggcaagta       960
     tgagaatcat actgagaatg cattgatgtt gtatatggcg tgtacccacg cctctaaccc      1020
     tgtgtatgct acattgaaga tacggatcta tttttatgat tcagtatcga attaataaat      1080
     attaaatttt atatcatgat gctcaattac attaattgtg ccctcaagta catcatataa      1140
     tacatgtctg aaagtcctaa tacaattatt tatactaatt acgcctaaac tatctaaata      1200
     tcttaaaact tgagtcttaa agactcttaa gaaatgccca gtctgaggat gtaaacgagt      1260
     gtggatcctc aagcccaaga aacacttcat tatccccagt ctcttcctga ggttgtgatt      1320
     gaactggacc ctgatgttga tgatgtcgtg gttcattagg aatggcctgt tgtggtgttc      1380
     tgttatcttg aaatagaggg gattttgaat ctcccagata tacacgccat tctctgcttg      1440
     agctgcagtg atgggttccc ctgtgcgtga atccatggtt gtggcagttg atgtgtacgt      1500
     agtatgagca cccacagttt agatcaaccc tcttacgccg gatggctcta cgtttagcag      1560
     ctctgtgttg gaccttgatt ggaacctgag tagagtgggc cttcgaggga gatgaaggtc      1620
     gcatttttta gtgcccaggc tttcaatgcg ctattcttct cctcgtccaa aaactcttta      1680
     tagctggaat tgggccctgg attgcagagg aagatagtgg gaattccgcc tttaatttga      1740
     actggcttcc cgtacttagt gttgctttgc cagtcccttt gggcccccat gaattcttta      1800
     aagtgcttta gatagtgggg atctacgtca tcaatgacat tgtaccagac atcattactg      1860
     tagacctttg gactaaggtc taaatgacca cacagataat tatgtggtcc caaagaccta      1920
     gcccacattg ttttccctgt ccgactgtca ccctcaatca ctatacttat gggtcttaaa      1980
     ggccgcgcag cggcactgac gacgttctcg gcagcccatt cctcaagttc ttctggaact      2040
     tgatcaaagg aagaagcaga aaaaggagaa acataaacct ccaccggagg tctaaagatc      2100
     ctatctaaat tacattttaa attatgatac tgaaaaataa aatctttagg gagtttttcc      2160
     ctaattattg ctaaagctgc gtcagcagaa ctggcattta acgcctctgc tgcagcatca      2220
     ttagctgtct gttgacctcc tcgagcagat cttccatcga tctgaaactc accccagtcg      2280
     atgtaatcac cgtccttctc gatgtaggac ttgacatcag agctggactt agctccctgg      2340
     aagtttgggt ggaattgagt tgaggtatta gggtgagtta catcaaaatg tctggggttt      2400
     ctgaactggg atttaccttt gaactggatg agggcatgga tatgcagaga cccatcttgg      2460
     tgtttttctt gtgatactct gataaataat ttatcagaag gacaggaaat gtttttaagt      2520
     agttcgagca tttgctcttt tggtaatgga catttcggat aagtgaggaa gatatttttg      2580
     gccttcactt ggaattggtg tgtacgaggc atattgaatt gggtgctctc aaaactctat      2640
     ggaatggggt gctttgggtg cctatttata ccgagcaccc aaatggcata ttcgtaattt      2700
     cgaaataaaa ttcaaaatcc tcacgctccc aaaagcggcc atccgtataa tatt            2754
//