ID HE572565; SV 1; linear; genomic RNA; STD; VRL; 3404 BP. XX AC HE572565; XX DT 06-DEC-2011 (Rel. 111, Created) DT 06-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Lilac leaf chlorosis virus replicase gene for methyltransferase/helicase, DE segment RNA 1, genomic RNA XX KW complete viral segment. XX OS Lilac leaf chlorosis virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3404 RA Varga A.; RT ; RL Submitted (30-JUN-2011) to the INSDC. RL Canadian Food Inspection Agency, Sidney Laboratory, 8801 East Saanich Road, RL Sidney, BC, V8L 1H3, CANADA. XX RN [2] RA James D., Varga A.; RT "Sequence analysis of RNA 1 of lilac leaf chlorosis virus supports a close RT relationship to subgroup 3 ilarviruses"; RL Arch. Virol. 0:0(2011). XX DR MD5; f8b9af804ff2dbf86f12ee94f74860fe. XX FH Key Location/Qualifiers FH FT source 1..3404 FT /organism="Lilac leaf chlorosis virus" FT /segment="RNA 1" FT /host="Syringa vulgaris" FT /mol_type="genomic RNA" FT /db_xref="taxon:722755" FT 5'UTR 1..99 FT CDS 100..3213 FT /codon_start=1 FT /transl_table=1 FT /gene="replicase" FT /product="methyltransferase/helicase" FT /db_xref="GOA:G8ZCG0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G8ZCG0" FT /protein_id="CCC42223.1" FT /translation="MDPKSITDLLVSTLQKQCSDETTAIGKAFSDNGLQLIERALPKHQ FT GEKLFVSFQLTADQQALLRRNFPGRDIHFANSDSSSHSFAAAHRLLETDYIYKCFGTST FT EPIIDLGGNFVSHIKRQRYNVHSCCPLLDDRDGARFTERFMSLKTYMNTHPKECCEADY FT CQNRFECCDRSAQYVMSVHSTSDLDMRVLCKALAVKGTKKMIMSIMMDPNMLIRDTGFL FT PNFNVQWEIDYTADEVTFDFVDAPCLGYKHKFSVLKQYLTTNAVVVGKTKAYRIERKSD FT FGGVFIVDITEVAGYHPGMPVGTARSCAWMNLLKNKTIVHTVEGVEHWYFDVERRSKVL FT VDTKVLTKVLEASFRQYKPTTEPRNMIQTIATMLSSSTNYTIINGVTLQAGESLQFDDY FT IAVATTIYVRTKRVFDELESNVARLQSHRLENIPTELVGKVGAVGAFIADAFSRESYQT FT ETKKNGNVSKLKLTSTVSKDVRSFLHYLIGKQGQNRHLISDPTLFVPLELVLETDWKVT FT RFLSVDDAKMDILKPAIDKIRLEEAEKLESLKKSEAFNRSITTIAKWIELHPTGELPKG FT LGEVAALIPETKDIQLLVPREETSDKVVNKYASEIAEAIQYFETEMDTNDRKLKSIGEH FT CQWSNKSTATIWAGDDSRRVYLPQANKWVGPHTIARVGPMCQYERGLTKDGYVPMLWEG FT DTLFVDEQCRRNLLRYSAIFFDKSCEFAAGLRLIPALKEALTREAKFVRKLVDGVAGCG FT KTTKILAEGKLSGDNPDLFLTSNKSSAMELRERLVGSQFVKSQRVRTVDSFLMNGTKKL FT TAERMFFDECFLQHAGCVYAAATLAEAEELVMFGDTQQIPFVSRIPHLRLKNSKVGADE FT KREFNMTYRSPADATFALSKWFYRKNVRTANRKIRSLRLKPIVSINQVEAGYDLYLTHT FT QAEKHTLIATGRFDKTKVFTSAEAQGKTVGKVAFVRLTRTSMSLYSGKDPLMGPCHGLV FT ALSRHTNSFDYYTVADTDGDDIIAKAIRDVGNESDEKVWSYIHSDFSL" FT 3'UTR 3214..3404 XX SQ Sequence 3404 BP; 972 A; 642 C; 858 G; 932 T; 0 other; gtgttaatta cacgtggttg tgtaattgta aaattttctt tccaagctct cagagaagtg 60 atttctcgat ttcaaatcac gtgacgtgat ttggcaggta tggacccaaa atctattacc 120 gatcttttag tctcgacatt gcaaaaacaa tgtagtgatg agacgactgc cataggaaaa 180 gccttttccg acaatggttt gcaactcatc gaaagggcgt tgcctaagca ccaaggtgag 240 aagctatttg tgagttttca actcacggcc gatcaacagg ctcttttgcg tcggaatttc 300 ccgggacggg acattcactt cgcgaattca gattcctcta gtcatagttt tgccgcagca 360 catagattac tagaaacaga ttatatttat aagtgtttcg gtacatcgac agaaccgata 420 attgacttag gtggtaattt tgtttcacac attaagagac agaggtacaa cgttcattca 480 tgttgtcctc tactcgacga tagagatggt gctcgattca cagagcggtt tatgtcgttg 540 aaaacgtaca tgaacacaca tccgaaggaa tgttgtgagg cagattactg tcaaaatagg 600 ttcgagtgtt gtgatagatc tgcgcagtac gtgatgtctg tgcattctac aagcgatctc 660 gatatgagag tgctctgcaa agctttggcc gttaaaggga cgaaaaagat gatcatgtct 720 ataatgatgg atccaaacat gttgatccga gacactggtt ttctcccgaa ttttaatgtg 780 caatgggaaa tcgattatac cgccgatgag gtgacgtttg attttgtgga tgccccttgt 840 ttggggtaca aacacaaatt ctcagtactg aaacagtact tgactacgaa tgcagtagtc 900 gtaggtaaga cgaaggctta ccgaatagag cgaaagtccg attttggagg tgtgttcatt 960 gtggacataa ccgaagtcgc tggatatcat ccaggtatgc ctgtggggac cgctaggtct 1020 tgtgcttgga tgaaccttct gaagaataaa accattgttc atacagttga gggcgtcgaa 1080 cattggtatt tcgatgtcga acgtaggagt aaggtcttag ttgatacgaa agtattgacg 1140 aaggttttgg aagcctcttt taggcaatac aaaccgacga ccgaacccag aaatatgatt 1200 caaacgattg cgactatgct ctcgtcttca accaattaca ccattattaa tggtgtgacg 1260 ttgcaggcag gcgaaagtct gcagtttgat gactatattg ctgtggctac tactatctac 1320 gtgaggacaa agagggtttt tgatgagctt gagtcgaatg tggctaggtt gcaaagtcac 1380 agacttgaga atatcccgac tgaattagta ggcaaggttg gagccgttgg ggctttcatt 1440 gccgatgctt tttcgaggga gtcttatcaa acagagacga aaaagaatgg aaacgtgtcg 1500 aagttaaaac tcacttctac tgtttctaag gacgtaagat ctttcttaca ctatttgatc 1560 gggaaacaag gacagaatcg tcatctgatt tctgatccga cattgtttgt accgcttgag 1620 ttagtgttgg aaacagattg gaaggtgaca agatttttgt ctgttgatga tgctaaaatg 1680 gacattttga aacctgcaat cgataagatc cggctcgagg aagctgagaa gctcgagagt 1740 ttgaagaaga gcgaagcttt caatagatcc ataacaacaa tcgccaagtg gatcgagtta 1800 catcctacag gggaactccc gaaaggattg ggtgaagttg cagcacttat acccgaaact 1860 aaggacattc agctgcttgt accgagagag gaaacttccg acaaggtagt caataagtac 1920 gctagcgaaa tcgcagaagc tatacagtac tttgagacag agatggatac caatgatagg 1980 aagttgaagt ctattggcga acattgccag tggtccaata agagcactgc tacgatttgg 2040 gctggtgatg attcaagacg agtgtactta ccccaagcaa acaaatgggt tggtcctcat 2100 actatcgcta gagtgggtcc gatgtgtcaa tatgaacgag gacttacgaa agatggttat 2160 gtacctatgc tttgggaggg agatactttg ttcgttgatg aacagtgtcg aagaaattta 2220 ttgcgttact ccgcgatatt tttcgataag tcttgcgaat tcgctgctgg tttaaggctg 2280 attccagcgc tgaaagaagc attgacgaga gaggctaagt tcgtgcgtaa gttggtcgat 2340 ggtgtcgcgg gatgcggcaa gacaacgaag atcttagccg aagggaagct cagcggggat 2400 aacccggact tgttcctgac tagcaacaag agttccgcga tggaacttcg agagaggttg 2460 gtgggatcac aatttgtcaa gtcacaacgg gttagaactg tcgattcatt tttgatgaat 2520 gggaccaaga agttaactgc cgaaaggatg ttcttcgatg agtgcttcct tcagcacgct 2580 ggttgtgttt atgcagcggc aacacttgca gaagccgaag aacttgtcat gttcggcgat 2640 acacaacaga tcccatttgt ttcccgaatt ccacatctcc gacttaaaaa ttctaaggtt 2700 ggagcggacg aaaagcgtga gtttaatatg acttaccgaa gtccagccga tgccactttt 2760 gcactttcta agtggttcta tcggaagaac gtccgaactg ccaacaggaa aatacgaagt 2820 cttagattga aaccgattgt ttctattaat caggtagaag caggttatga tctgtaccta 2880 acccacactc aagcggagaa gcatacactc atcgcgacag ggaggtttga taagacgaaa 2940 gtatttacta gcgccgaggc tcaaggcaaa actgttggta aggtagcttt tgttcgattg 3000 accaggacat ccatgagttt gtactctgga aaggacccgt tgatgggacc gtgtcatggt 3060 ttagtcgctt tgtctaggca cacgaatagt tttgattact atacagtggc cgatacggat 3120 ggcgacgaca taatcgcgaa ggcgataaga gatgttggta acgaatcaga cgaaaaagtc 3180 tggagttaca ttcacagtga tttttctctg tgatttgaag tgctgggttt tagttgacca 3240 gaaaaccgaa taccaccgaa taggtgatgt accctttccc cgttagggag gtgtgggtag 3300 tgtaacaaag gaaatgcgtt cccatttccg atggtcttgt tatgcaacaa cacgaatgtg 3360 ttgattccta tatccgagaa ggatatagat gccctttagg aacc 3404 //