ID GU990612; SV 1; linear; genomic DNA; STD; VRL; 2614 BP. XX AC GU990612; XX DT 03-MAY-2010 (Rel. 104, Created) DT 03-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Okra yellow mosaic Mexico virus - [Sida:Colima 2] coat protein (AV1), DE replication enhancer protein (AC3), transactivator protein TrAP (AC2), DE replication protein (AC1), and AC4 (AC4) genes, complete cds. XX KW . XX OS Okra yellow mosaic Mexico virus - [Sida:Colima 2] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2614 RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A., RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.; RT "New Strains of Okra Yellow Mosaic Mexico Virus Isolated from Weeds"; RL Unpublished. XX RN [2] RP 1-2614 RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A., RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.; RT ; RL Submitted (08-MAR-2010) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa San Jose #2055, San Luis Potosi 78216, RL Mexico XX DR MD5; 0531e800ae54bcc30ee104e0fea8b538. XX FH Key Location/Qualifiers FH FT source 1..2614 FT /organism="Okra yellow mosaic Mexico virus - [Sida:Colima FT 2]" FT /host="Sida" FT /mol_type="genomic DNA" FT /country="Mexico:Colima" FT /collection_date="01-Jan-2010" FT /db_xref="taxon:756894" FT gene 193..948 FT /gene="AV1" FT CDS 193..948 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="capsid protein; CP; AR1" FT /db_xref="GOA:D6PZP6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D6PZP6" FT /protein_id="ADF58296.1" FT /translation="MPKRDLPWRSIVGTSKVSRNSNYSPRAGSGPRVNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIVN" FT gene complement(945..1343) FT /gene="AC3" FT CDS complement(945..1343) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; AC3; AL3" FT /db_xref="GOA:D6PZP7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D6PZP7" FT /protein_id="ADF58300.1" FT /translation="MDSRTGELITVPQAENGVYIWEIENPLYFKTYRVEEPLYTRTRIY FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFKHLVNMYLDDLGVISINN FT VIRAVTFATDRSYVNHVLENHSIKFKLY" FT gene complement(1090..1479) FT /gene="AC2" FT CDS complement(1090..1479) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein TrAP" FT /note="transcription factor; regulation of virus late" FT /db_xref="GOA:D6PZP8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D6PZP8" FT /protein_id="ADF58299.1" FT /translation="MQSSSPSYPPSIKLAHRQAKRKSIRRRRIDLECGCSIYFHIGCTG FT HGFTHRGTHHCTSGREWRLYLGDRKSPIFQDIPSRGTIVHADQNIPRSDTVQPQPEESV FT ASPQSLPELPSLDDIDDSFWVDLFS" FT gene complement(1391..2479) FT /gene="AC1" FT CDS complement(1391..2479) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /note="RCR-initiator protein" FT /db_xref="GOA:D6PZP9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D6PZP9" FT /protein_id="ADF58297.1" FT /translation="MPQHPKRFQINQKNYFLTYPQCSLTKEEALSQLQTLKTPVNRKFI FT KICRELHEDGQPHLHVLIQFEGKYRCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSY FT IDKDGDTIEWGQFQVDGRCARGGQQTVNDTYAKALNASSAEVALIIIREEQPQHFFLQH FT HNLVANANRIFQKPPEPWVPPFPLSSFTNVPDAMQEWADEYFGRGSAARPIRPVSLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDIAPQYLKLKHWKELIGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDYLDKEENRALRNWTIHNAIFITL FT ISALYQISTQASQAEIDQEEAD" FT gene complement(2062..2319) FT /gene="AC4" FT CDS complement(2062..2319) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D6PZQ0" FT /protein_id="ADF58298.1" FT /translation="MGNLICTSSSSSRGNTGARITDSSTWCPQPGQHISIQTFRELNPA FT PTSSPTLTKTETPLNGGSFKSTEDVLEEVSRQLTTHMPRR" XX SQ Sequence 2614 BP; 645 A; 560 C; 626 G; 783 T; 0 other; accggatggc cgcgcgattt ttccccccca cgcgcgtacg ctcctcttta atttgaatta 60 aagcgattcg ctttcgtttc gtccaatcat gtaacgcctg acgagcttag atattttaaa 120 caacttgggc tctaagttgt tgggtttcgg ttataaatta aagagactat ggcccactac 180 atttaattca aaatgccgaa gcgcgatctc ccatggcgct cgatcgtggg aacttcaaag 240 gtgagtcgca attctaatta ttctcctcgt gcaggtagtg ggccaagagt taacaaggca 300 tctgaatggg taaacaggcc catgtacagg aagcccagga tttatcggac gttaagaacg 360 cccgacgttc caagaggctg tgaagggcct tgcaaagtcc agtcctatga gcagcgacat 420 gatatctcac atgtcggtaa ggttatgtgt atttctgatg tcacacgtgg caatggtatc 480 acccaccgtg tgggtaagcg tttctgtgtt aaatctgttt atattctcgg taagatttgg 540 atggatgaga atatcaagct caagaaccac acgaacagtg ttatgttctg gttggtaaga 600 gatcgtagac cgtatggcac acctatggat ttcggtcaag tgttcaacat gttcgacaac 660 gagcccagca ctgctacggt gaagaacgat ctacgcgatc gttaccaggt catgcacaag 720 ttctacggca aggtgacagg tggacagtat gccagcaacg agcaggcgat agtcaagcgc 780 ttctggaagg ttaacaatca tgtggtttac aatcatcagg aggctggcaa gtacgagaat 840 cacacggaga acgctttgtt attgtacatg gcatgtactc atgcctctaa ccctgtatat 900 gcaacgctta agatcaggat ctacttctac gattcgatcg tgaattaata aagtttgaat 960 tttattgaat gattttccag tacatggttt acatacgacc tgtctgttgc gaaagtaaca 1020 gctctgatta cattgttaat tgaaatgacg cctaaatcat ctaaatacat attaactaaa 1080 tgtttaaacc tagctaaata ggtcgaccca gaagctgtca tcgatgtcgt ccagacttgg 1140 aagttcaggt aggctttgtg gagatgcaac gctctcctca ggttgtggtt gaaccgtatc 1200 tgaacgtggt atattctggt ccgcgtgtac aatggttcct ctactcggta tgtcttgaaa 1260 tataggggat tttcgatctc ccagatatag acgccattct ctgcctgagg tacagtgatg 1320 agttcccctg tgcgtgaatc catgccctgt gcaacctatg tggaagtata tggagcaccc 1380 gcactccaga tcaatccgcc tcctcctgat cgatttccgc ttggcttgcc tgtgtgctaa 1440 tttgatagag ggcggatatg agggtgatga agattgcatt atggatggtc cagttcctga 1500 gtgctctgtt ttcctctttg tcgaggtaat ctttatagct ggcaccctca cctggattgc 1560 aaagcacgat tgatgggata cctcctttaa tttggactgg cttgccgtac ttacaatttg 1620 actgccagtc tctttgggcc ccgattaatt ctttccagtg ctttagcttt agatattgcg 1680 gtgcgatgtc atcaatgacg ttatactcca cttcatttga gaacactcta gaattgaagt 1740 ctaggtgtcc actaaggtag ttatgtgggc ctaacgcacg agcccacatc gtcttccctg 1800 tcctcgaatc accttctact atgagactta ctggtctaat tggccgcgca gcggaacctc 1860 tcccaaaata ttcatcggcc cactcttgca tcgcgtctgg tacgttagtg aacgaggaga 1920 gtggaaacgg agggacccat ggttccggag gcttttggaa tattctgttg gcattagcta 1980 cgaggttatg atgttgcaag aagaaatgtt gcggttgttc ttctctgatt attatcagag 2040 ctacctctgc agatgatgca ttcaacgcct tggcatatgt gtcgttaact gtctgctgac 2100 ctcctctagc acatcttccg tcgacttgaa actgccccca ttcaatggtg tctccgtctt 2160 tgtcaatgta ggacttgacg tcggagctgg atttagctcc ctgaatgttt ggatggaaat 2220 gtgctgacct ggttggggac accaggtcga agaatctgtt attcgtgcac ctgtatttcc 2280 cctcgaactg gatgaggacg tgcagatgag gttgcccatc ttcgtgtaat tctctgcaga 2340 tcttgatgaa tttcctgttc actggtgttt ttagggtttg taattgggaa agtgcttcct 2400 ctttagtaag agagcattgt gggtatgtga ggaaataatt tttctgattt atttgaaaac 2460 gttttggatg ttgtggcatt tttgtaaata agagggtgtg taccagttga gctctctcaa 2520 aacttggtga atgaattggt acacaggtac acaatatata gtagaactct cattaacgga 2580 tttgcaacac gtggcggcca tccgatataa tatt 2614 //