ID GU972584; SV 1; linear; genomic RNA; STD; VRL; 3532 BP. XX AC GU972584; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSC4 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3532 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3532 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 2d822b08c906aaa574374c77f02beb33. DR EuropePMC; PMC3550808; 23730004. XX FH Key Location/Qualifiers FH FT source 1..3532 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSC4" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D996" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D996" FT /protein_id="ADJ10941.1" FT /translation="MGKFYYSNRRLACWAAAKNTHLGGAVEQWLAAIITDPSFRQTVKE FT DVQENRTRPEVIRMFSWKVGFGPIDNPEKCDWHFVLTGERPEQPTRPVKADEVVVVPQP FT KKVVIPSPPPPPAPYFRAAGAFAPTRSGFIRATVERLAREREESRAAALFAELPLEYPQ FT GTPLKLSLAMKFAMLKHTTWRKWYDTSDERLYGAHPGGPCLPPPPPIQKPPSFEERLHA FT AVKRQQCARAFAQETSLGLNKAWVGIIDIPSTSVCCADGRTTGGQTIAQEADPLNHRVS FT SNTAPGRAAWISERRSALRRREQAQSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRNAYTPRGLWRGPSTRANYTLDFRLNGIPTGENTLEILYNPVSDEEMDDYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPG FT LQYSQEEPRRESLIRLYVASTNATVDPDSVLAAISVGTLRQHIGSLHYRTVASSVHTAQ FT VQGTTLRATMMGNAVVVSPEGGLVTGVPEANVHIGGSSSMRMVGPLAWENVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDTI FT SDFKGVQYERWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITISADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIILWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGE FT NPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQVFALQ FT KLEGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTS FT FPV" FT 3'UTR 3334..>3532 XX SQ Sequence 3532 BP; 849 A; 749 C; 914 G; 1020 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgtt gggctgcggc aaagaacacc 60 catctgggtg gtgccgttga acaatggctg gcggccatta ttactgaccc ctccttccgc 120 caaactgtta aggaggatgt ccaggaaaac cggacgcgcc ctgaggtcat ccggatgttt 180 tcctggaagg tgggattcgg gcccattgac aacccggaaa aatgcgactg gcatttcgtc 240 cttacgggcg aaaggccaga gcaaccgacc cggccggtta aagccgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca tctccacctc ctcccccagc tccctatttt 360 agggctgctg gggcttttgc accaacccgg tccgggttta ttcgggccac tgtggaaaga 420 ctcgcccggg agcgggaaga gtcgagagct gcggcactct ttgccgaatt gccattggag 480 tatccccagg gtactccttt gaagttgagc ctggcaatga agtttgccat gctcaagcat 540 accacttgga ggaagtggta tgacactagt gatgagcgcc tttatggggc tcatcctggt 600 ggtccttgtc ttcctccccc tcccccaatc caaaaaccac cctcttttga ggagaggtta 660 cacgctgctg tcaaaaggca acagtgtgct agggcttttg cccaagaaac ttcgctgggt 720 ctgaataagg cctgggtggg aatcatcgac atcccaagca cttctgtgtg ctgtgcggat 780 ggtcggacta ctggggggca aacgatagcc caggaagctg accctcttaa tcacagggtc 840 agttccaaca cagcccccgg tagggcagct tggatctctg agcgccgcag cgctctgaga 900 agaagggagc aagcacagag cttgcagggt cttgctgctc aaactgatat gacgtttgag 960 caggccagga acgcttatct tggcgctgcc gacatgatag aacaaggcct accgttacta 1020 cctcctctga gaaatgctta cacgcctcgt ggtctgtgga ggggaccttc taccagagcc 1080 aattatacgc ttgattttag gctcaatggt ataccaacag gggaaaatac tttggaaata 1140 ttgtataacc ctgtttcaga cgaggaaatg gatgactacc gtgacagggg tatgtcagca 1200 gtcgtgattg atgcgcttga aattgccatt aatccttttg ggatgccagg caatccgact 1260 gatcttactg tcgttgcaac atatgggcat gaacgcaata tggagcgtgc ctttattggt 1320 tcttcttcca cgtttcttgg aaatgggtta gcaagggcca ttttctttcc cggtttgcaa 1380 tatagccagg aagaacctag gcgcgaatct ttaattcgct tgtatgttgc ttcaactaac 1440 gccacagttg atcctgattc agttttggcg gccattagtg ttggaacttt gcgccagcac 1500 attggttcgt tgcattatag aactgtggct agttcggtgc atactgccca agtacaaggc 1560 acaaccctaa gggcgactat gatgggtaat gctgtcgtag tttctcctga aggaggcctt 1620 gtaactggtg tgcctgaagc caatgtacat attggtggaa gttccagtat gcgaatggta 1680 ggtcccctgg catgggaaaa tgttgaggaa ccagggcaaa ccttctctat cagaagtcgg 1740 tcgcgatctg tgaggattga caggaatgtt gaccttcctc aacttgaggc cgagcccaga 1800 ttgagttcga ccgtgagagg attagctggt agaggagtaa tttatattcc caaggattgc 1860 caggcaaaca ggtacttggg caccctgaat atacgtgaca cgatctcaga ttttaagggt 1920 gttcagtatg aaaggtggat aactgcaggg ttggtcatgc ctacttttaa gatagttgtt 1980 aggctacctg caaatgcctt tactggattg acatgggtga tgagctttga tgcttataat 2040 cggataacta gtagaattac tattagtgcg gatcctgttt ataccctttc agtccctcat 2100 tggcttatcc accataagtt gggcacgttt tcatgtgaaa ttgactatgg agaattgtgt 2160 ggtcatgcta tgtggttcaa gtccacaaca tttgaatctc ctaggttgca ttttacatgt 2220 ttgacgggca acaacaaaga gttggcagca gattggcaag ctgttgtgga actatatgct 2280 gaattggaag aagccacatc ttttcttggg aaaccaacat tggtttttga cccaggtgtt 2340 tttgatggta aattccagtt tttaacttgc cctcccattt tctttgattt aacagccgtc 2400 acggctctta ggagtgctgg actgacattg ggacaggtcc caatggttgg tactactaag 2460 gtgtataacc taaatagcac tcttgtgagt tgtgttttgg gcatgggagg tactattaga 2520 ggaagggtgc atatttgtgc tccaatcttc tatagtataa ttttgtgggt tgttagtgag 2580 tggaacggga ccactatgga ttggaacgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaagatggaa gctttgaagt taaaatccgt tctccatatc accgaacgcc tgctagattg 2700 cttgctggtc aaagccagag ggacatgagc tctctgaatt tctatgcaat agcagggccc 2760 attgctccat caggggaaac agcacgactc cctattgtcg tacaaattga agaaattgtg 2820 cgtccagacc tttccctacc aagttttgag gaagattact ttgtgtgggt ggatttttct 2880 gaattcactc ttgacaaaga agagattgag attggttctc gtttctttga ttttacttca 2940 aatacttgta gggtttctat gggagagaac ccgttcgcag caatgattgc ttgccatgga 3000 ttacatagtg gtatattgga cctcaaactt caatggagtc taaatactga atttggcaag 3060 agcagcggga gcgtcaccat tacaaagctg gttggtgaca aggccacggg cctggatggg 3120 ccttcacaag tgtttgcctt acagaaactg gagggaacta cggagttgtt gattggaaat 3180 tttgcaggtg caaatccaaa cactcatttt tctctctata gtcgatggat ggcaatcaaa 3240 ttggaccaag cgaagagtat caaggtactc cgcgttttgt gtaaaccccg tccgggtttt 3300 aatttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccatgta 3360 catatgttta tttttgttgt aattgtgtgt aatgttttgt gttattgttt gttttaactt 3420 gttttctgcc tttgtgtgtt tattttcatg cttttggtgg cgatagtgtg ttgtttgtcc 3480 tttggacaca ctgcctcgtt ggacacaaaa agattttcct ttctttttac tg 3532 //