ID GU972583; SV 1; linear; genomic RNA; STD; VRL; 3505 BP. XX AC GU972583; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSC3 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3505 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3505 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 6f6aab6eb2d693b87b5ee0b89b08fdbd. XX FH Key Location/Qualifiers FH FT source 1..3505 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSC3" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D995" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D995" FT /protein_id="ADJ10940.1" FT /translation="MGKFYYSNRRLACWAAAKNTHLGGAVEQWLAAINTDPSFRQTVKE FT DVQENRTRPEAIRMFSWKVGFGPIDNPEKCNWHFVLTGERPEQPIRPVKADEVVVVPQP FT KKVVIPSPPPPPAPYFRAAGAFAPTRSGFIRATVERLTRERDESRAAALFAELPLEYPQ FT GTPLKLSLAVKFAMLKHTTWRKWYDTSDERLYGAHPGGPCLPPPPPIQKPPSFEERLHA FT AVERQQCARAFALETSLGLNKAWVGIIDIPSTSVCCADGRTTGGQTIAQEADPLNHRVS FT SNTAPGRAAWISERRSALRRREQAQSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRNAYMPRGLWRGPSTRANYTLDFRLNGIPTGENTLEILYNPVSDEEMNDYRDRGMS FT AVVIDALEIAINPLGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPG FT LQYSQEEPRRESLIRLYVASTNATVDPDSVLAAISVGTLRQHIGSLHYRTVASSVHTAQ FT VQGTTLRATMMGNAVVVSPEGGLVTGVPEANVHIGGSSSMRMVGPLAWENVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGE FT NPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQVFALQ FT KLEGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTS FT FPV" FT 3'UTR 3334..>3505 XX SQ Sequence 3505 BP; 842 A; 761 C; 912 G; 990 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgct gggctgcggc aaagaacacc 60 catctgggtg gtgccgttga acaatggctg gcggccatta acactgaccc ctccttccgc 120 caaactgtta aggaggatgt ccaggaaaac cggacgcgcc ctgaggccat ccggatgttt 180 tcctggaagg tgggattcgg gcccattgac aacccggaaa aatgcaactg gcatttcgtc 240 cttacgggcg aaaggccaga gcaaccgatc cggccggtta aagctgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca tctccacctc ctcccccagc tccctatttt 360 agggctgctg gggcttttgc accaacccgg tccgggttta ttcgggccac tgtggaaaga 420 ctcacccggg aacgggatga gtcgagagct gcggcactct ttgccgaact gccattggag 480 tatccccagg gtactccttt gaagttgagc ctggcagtga agtttgccat gctcaagcat 540 accacttgga ggaagtggta tgacactagt gatgagcgcc tttatggggc tcatcctggt 600 ggtccttgtc ttcctccccc tcccccgatc caaaaaccac cctcttttga ggagaggtta 660 cacgctgctg tcgaaaggca acagtgtgct agggcttttg ccctagaaac ttcactgggt 720 ctgaataagg cctgggtggg aattatcgac atcccaagca cttctgtgtg ctgtgcggat 780 ggccggacta ctggggggca aacgatagcc caggaagctg accctcttaa tcacagggtc 840 agttccaaca cagcccctgg tagggcagct tggatctctg agcgccgtag cgctctgaga 900 agaagggagc aagcacagag cttgcagggt cttgctgctc aaactgatat gacgtttgag 960 caggccagga atgcttatct tggcgctgcc gacatgatag agcaaggcct accgttacta 1020 cctcctctga gaaatgctta catgcctcgt ggtctgtgga ggggaccttc tacccgagcc 1080 aactatacgc ttgattttag gctcaatggt ataccaacag gggaaaatac tttggaaata 1140 ttgtataacc ctgtttcaga cgaggaaatg aatgactacc gtgacagggg tatgtcagca 1200 gttgtgattg atgcgcttga aattgccatt aatcctcttg ggatgccagg caatccgact 1260 gatcttactg tcgttgcaac atatgggcat gaacgcaata tggagcgtgc ctttattggt 1320 tcttcttcca cgtttcttgg aaacgggtta gcaagagcca ttttctttcc cggtttgcaa 1380 tatagccagg aagaacctag gcgcgaatct ttaattcgct tgtatgttgc ttcgactaac 1440 gccacagttg atcctgattc agttttggcg gccattagtg ttggaacttt gcgccagcac 1500 attggttcgt tgcattatag aactgtggct agttcggtgc atactgccca agtgcaaggc 1560 acaaccctaa gggcgactat gatgggtaat gctgtcgtag tttctcctga aggaggcctt 1620 gtaactggtg tgcctgaagc caatgtacat attggtggaa gttccagtat gcgaatggta 1680 ggtcccctgg catgggaaaa tgttgaggaa ccagggcaaa ccttctctat cagaagtcga 1740 tcgcgatctg tgaggattga caggaatgtt gaccttcctc aacttgaggc cgagcccaga 1800 ctgagctcga ccgtgagagg attagctggt agaggagtaa tttatattcc caaggattgc 1860 caggcaaata ggtacttggg caccctgaat atacgtgata tgatctcaga cttcaagggt 1920 gtccagtatg aaaagtggat aactgcagga ttagtcatgc ctactttcaa gatagttatt 1980 aggctacctg caaatgcctt tactggattg acatgggtga tgagctttga tgcttataac 2040 cggataacta gtagaattac tgctagtgcg gatcccgtat acaccttgtc agtcccacat 2100 tggcttatcc accataagtt gggcacgttt tcatgtgaga tagactatgg agaattgtgt 2160 ggtcatgcta tgtggtttaa atcaaccaca tttgaatctc caaggttgca tttcacgtgt 2220 ttaacgggca acaacaaaga gttagcggca gactggcaag ctgtcgtaga actatatgcc 2280 gaattggaag aggccacttc tttccttggg aaaccaacct tggtttttga cccaggtgtt 2340 ttcaatggca aatttcaatt tcttacttgc cctcccatat tctttgattt aacggccgtc 2400 acggctctta ggagtgctgg gctgacattg gggcaagtcc caatggttgg caccactaag 2460 gtttataatc taaacagcac tcttgtgagt tgtgttttgg gtatgggagg tactgttaga 2520 gggagggtgc acatttgtgc gccaatcttc tacagtattg ttttatgggt cgttagtgag 2580 tggaacggga ccactatgga ctggaatgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaagatggaa gttttgaagt taaaatccgt tctccatatc accgaactcc tgctagattg 2700 cttgctggcc aaagccagag ggacatgagc tctctgaatt tctatgcaat agcagggccc 2760 attgctccat cgggggaaac agcacgactc cctattgttg tacaaattga agaaattgtg 2820 cgtccagacc tttccctacc aagttttgag gaagactatt ttgtgtgggt ggatttttct 2880 gaattcactc ttgacaaaga agagattgag attggttctc gtttctttga ttttacttca 2940 aatacttgta gggtttctat gggagagaac ccgtttgcag caatgattgc ttgccatgga 3000 ttacatagtg gtatattgga cctcaaactt caatggagtc taaatactga atttggcaag 3060 agcagtggga gcgtcaccat tacaaagctg gttggtgata aggccacggg cctggatggg 3120 ccttcacaag tgtttgcctt acagaaactg gagggaacta cggagttgtt gattggaaat 3180 tttgcaggtg caaatccaaa cactcatttt tctctctata gtcggtggat ggcaatcaaa 3240 ttggaccaag cgaagagtat caaggtactc cgcgttttgt gtaaaccccg tccgggtttt 3300 aacttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccatata 3360 catatgttta tttttgttgt aattgtgtgt aacgttttgt gttgttgttt gttttaactt 3420 gttttctgcc tttgtgtgtt tattttcatg cttttggtgg cgataggtgt gttgtttgtc 3480 cttggacacc actgcctgtg accaa 3505 //