ID GU972582; SV 1; linear; genomic RNA; STD; VRL; 3458 BP. XX AC GU972582; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSC2 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3458 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3458 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 7cec93cba64e59c5d0dbff3ca20038e0. XX FH Key Location/Qualifiers FH FT source 1..3458 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSC2" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D994" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D994" FT /protein_id="ADJ10939.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAIETDSSFRQTVKE FT DVQENRTQPTAIRMFSWKIGFGPIDNPEKCDWRFVLTGKGPLQPTQPVKADEVVVVPQP FT KKVVIPSPPPPPAAYFRAVGAFAPTRSGFIRATVERLTREREESRVAALFAELPLEYPQ FT GAPLKLSLAAKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQERVRE FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADSLQHRIS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDTTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMLTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITTSADPVY FT TLSVPHWLIHHKLGTFSCEVDYGELCGHAMWFKATTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGAFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPVVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIGEIVRPDFSLLSLEDDYFVWVDFSEFTLDKEEIEIGSRFSDFTSSTCSVSMGE FT NPFAAVIACHGLHSGVLGLKLQWSLNTEFGKSSGSVTVTKLVGDKATGLDGPSQIFAIQ FT KLEGTTELLIGNFAGANPNTRFSLYSRWLAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS FT FPV" FT 3'UTR 3334..>3458 XX SQ Sequence 3458 BP; 825 A; 769 C; 914 G; 950 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgtt gggctgctgg aaagaacccc 60 catctggggg gttctgtcga acaatggctg gcggccattg aaactgattc ctccttccgc 120 caaactgtta aggaggacgt ccaggagaac aggacgcagc caactgctat ccggatgttc 180 tcctggaaga ttgggttcgg gcccattgac aatcccgaaa agtgcgactg gcgcttcgtc 240 ctaacgggca aagggccatt gcagccgacc cagccggtta aagctgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca tcaccacctc ctcccccagc agcatatttt 360 agggctgttg gggcttttgc accaaccagg tccgggttta ttcgggccac tgtggaaaga 420 ctcacccggg aacgggaaga gtcgagagtt gcggcactct ttgccgaatt gccattggag 480 taccctcagg gtgctcctct gaagttgagc ctggcggcga aattcgccat gctcaaacat 540 accacttgga ggaagtggta tgacactagt gatgagcgcc ttttggaggc tcatcctggt 600 ggtccttgtc ttcctccccc tcccccaatc caaaatcctc cctccttcca ggagagggtg 660 agggagtttt gcaggatgaa gtcctgcgcc aaggcttttg ccttggaaac ctccctaggt 720 ctcaataagg cctgggtagg tttagtggac atccccagta cttctgtgtg ctgtgcggat 780 gggaagacta ccggtgggca gacaattgcc caggaagctg attctttgca acataggatc 840 agtacgtcag tagcccccgg tagggcacaa tggatctccg agcgcaggca agctctgcgg 900 aggagagagc aagcaaatag cttgcaaggt cttgctgctc aaaccgatat gacttttgag 960 caggccagga atgcttatct tggtgctgcc gacatgattg agcaaggcct accgctgctt 1020 ccccctctgc gcagcgctta cgcccctagg ggcttgtgga ggggaccctc gaccagagcc 1080 aattacacgc tagattttag gctcaatggt attccgaccg ggacaaacac attggaaata 1140 ttgtataatc ctgtgtcgga ggaagaaatg gaagagtacc gggacagggg catgtcagct 1200 gtggtaattg atgcgctaga aatagccata aacccatttg gcatgcctgg aaatcctacg 1260 gacttgactg tcgtagcgac atatgggcat gagcgcgaca cgacgcgcgc ctttattgga 1320 tctgcttcca cattcttagg gaatgggtta gctagagcca ttttctttcc tggtttgcaa 1380 tatagccagg aggaaccaag gcgcgaatct ataattcgcc tatatgttgc ctctaccaat 1440 gccactgtgg atactgattc agtcttggca gccattagtg ttggcacttt gcgtcaacat 1500 gttggttcca tgcactaccg gacggtggct agtaccgtgc accaggctca ggtgcaagga 1560 acgacgctca gggctactat gatgggtaac actgtcgtag tatcacctga aggaagcctg 1620 gttactggaa cccctgaagc aagagtcgaa atagggggcg gttctagtat taggatggtg 1680 ggacctctac agtgggaaag tgtggaggaa ccagggcaaa ccttctctat cagaagccgt 1740 tcacggtctg tgaggattga tagaaacgtt gatcttcctc aacttgaggc cgagcctaga 1800 ttgagctcga ctgtgagagg attagctggt agaggagtaa tctatattcc caaggattgc 1860 caggcaaata ggtacttggg caccctgaac atacgtgata tgatctcaga tttcaagggt 1920 gtccagtatg agaaatggat aactgcaggt ttagtcatgc tgacctttaa aatagttgtc 1980 agactacctg cgaatgcctt tactggattg acgtgggtta tgagctttga tgcttacaat 2040 cggataacta gtagaattac tactagtgct gatcctgttt ataccctgtc agtcccgcac 2100 tggcttatcc accacaagtt gggtacgttc tcttgtgaag tagactatgg agagttgtgt 2160 ggtcatgcaa tgtggtttaa agctacaaca tttgaatctc ctaggctaca tttcacgtgc 2220 ctaactggta ataataaaga gctggcagca gactggcaag ctgttgttga gctttatgca 2280 gaactggagg aagccacttc tttcttggga aagcccaccc tggtttttga tccaggtgcc 2340 tttgatggca aattccagtt tctaacttgc cctcccatat tctttgatct aacggccgtc 2400 acggctctta ggagtgctgg gcttacgctg ggccaggttc cagtggtagg cactaccaag 2460 gtttataatc taaacagcac ccttgtgagt tgtgtgttag gtatgggggg tactattaga 2520 ggaaaggttc acatttgtgc accaatcttt tatagtattg ttttatgggt cgttagcgag 2580 tggaacggga ccactatgga ttggaatgaa cttttcaagt atcccggggt gtatgtggaa 2640 gaggatggaa gctttgaagt taaaatccgt tctccatatc accgaacgcc tgctagattg 2700 cttgctggac aaagtcagag agacatgagc tctctaaatt tttatgcaat agcgggaccc 2760 atcgctccat cgggtgagac cgcacgactc cctatcgttg tacagattgg tgagatcgtg 2820 cgtccggact tttctttact aagtcttgaa gatgattatt ttgtgtgggt ggacttttct 2880 gagttcactc ttgataagga ggaaattgag attggttctc gtttctctga ttttacttca 2940 agtacttgta gtgtgtctat gggagaaaat ccgtttgctg cagtgattgc ctgtcatgga 3000 ttgcacagtg gtgttttggg cctcaaactt caatggagtc taaacaccga atttggcaag 3060 agcagtggga gcgttactgt tactaagctg gtcggtgaca aagccactgg cctggatgga 3120 ccttcccaaa tttttgccat acaaaaacta gagggaacta cggaattgtt gattgggaat 3180 tttgcaggag caaacccaaa cactcgtttc tccctctata gtcgatggtt ggcaattaaa 3240 ctggatcaag caaagagtat taaagtgctc cgtgtcttgt gtaagcctcg tccaggtttc 3300 agtttttatg gaagaaccag cttcccagtc tagggtatct gactttaaaa gacccacatg 3360 tacgtatgtg ctttgctaac ttcgtatatg tttctgtgtt attatttgct ttaacttgtt 3420 taccgcttta gtgtgtttat tttcctttct ttttactg 3458 //