ID GU972581; SV 1; linear; genomic RNA; STD; VRL; 3762 BP. XX AC GU972581; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSC1 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3762 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3762 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 1da74ce22599bfb05e42619af9325ed6. XX FH Key Location/Qualifiers FH FT source 1..3762 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSC1" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT 5'UTR 1..232 FT CDS 233..3565 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D993" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D993" FT /protein_id="ADJ10938.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINTDPSFRQTVKE FT DVQENREQPTAVRMFSWKVGSGPIDNPEKCDWHFVLTGERPAQPSRPVKADEVVVVPQP FT KKVVIPTPPPPPAPYFRAVGAFAPTRSGFVRAIVERLTRLREESRAAALFAELPLEYPQ FT GAPLKLSLAAKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQERVRE FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADPLQHRIS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASIFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASVVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMI FT IDFKGVQYEKWIAAGLVMPTFKIIIRLPANAFTGLTWVMSFDAYNRITSRITTSADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSALVSCVLGMGGTIKGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIDEIVRPDFSLLSLEDDYFVWVDFSEFTLDKEEIEIGSRFSDFTSSTCRVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQIFAIQ FT KLEGTTELLVGNFAGANPNTRFSLYSRWLAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS FT FPV" XX SQ Sequence 3762 BP; 906 A; 814 C; 957 G; 1085 T; 0 other; atgaaaaatg tttacgtttt cttacgttac cgtgatttca cttttcttta gccaagagtt 60 taagaaactc aaaagtgaaa ctgccaagag tttaagaaac tcacaaagcg aagagtttaa 120 gaaactcatc attgcttttt tgttctttta ttttgcgctt tatttgttta gcattttatt 180 tagttctttt aaaaagcttt tgttttgttt ttctttttct ttacttgccc ttatgggcaa 240 attttattat tccaacaggc ggcttgcctg ttgggctgct gggaagaacc ctcatcttgg 300 gggttctgtt gaacaatggc tggcggccat taacactgat ccctccttcc gccaaactgt 360 taaggaggat gtccaagaaa accgagaaca gccaactgct gttcgaatgt tttcttggaa 420 agttgggtcc gggcccattg acaatcccga gaaatgcgac tggcattttg tccttacggg 480 cgagaggcca gcgcagccgt cccggccggt taaagccgat gaggttgtgg tggtgccaca 540 accgaagaag gtggtgattc caacaccacc tcctccccca gctccctact ttagggctgt 600 tggggctttt gcaccaaccc ggtccgggtt tgttcgggcc attgtggaaa ggctcacccg 660 gctacgggag gagtcgagag ctgcggcact ctttgccgaa ttgccattgg agtaccctca 720 gggtgctcct ctgaagttga gcctggcggc gaaattcgcc atgctcaaac ataccacttg 780 gaggaagtgg tatgacacta gtgatgagcg ccttttggag gctcatcctg gtggtccttg 840 tcttcctccc cctcccccaa tccaaaatcc tccctccttc caggagaggg tgagggagtt 900 ttgcaggatg aagtcctgcg ccaaggcttt tgccttggaa acctccctag gtctcaataa 960 ggcctgggta ggtttagtgg acatccccag tacttctgtg tgctgtgcgg atgggaagac 1020 taccggtggg cagacaattg cccaggaagc tgatcctttg caacatagga tcagtacgtc 1080 agtagccccc ggtagggcac aatggatctc cgagcgcagg caagctctgc ggaggagaga 1140 gcaagcaaat agcttgcaag gtcttgctgc tcaaaccgat atgacttttg agcaggccag 1200 gaacgcttat cttggtgctg ccgacatgat tgagcaaggc ctaccgctgc ttccccctct 1260 gcgcagcgct tacgccccta ggggtttgtg gaggggaccc tcgaccagag ccaattacac 1320 gctagatttt aggctcaatg gtattccgac cgggacaaac acattggaaa tattgtataa 1380 tcctgtgtcg gaggaagaga tggaagagta ccgggacagg ggcatgtcag ctgtggtaat 1440 tgatgcgcta gaaatagcca taaacccatt tggcatgcct ggaaatccta cggacttgac 1500 tgtcgtagcg acatatgggc atgagcgcga catgacgcgc gcctttattg gatctgcttc 1560 catattctta gggaatgggt tagctagagc cattttcttt cctggtttgc aatatagcca 1620 ggaggaacca aggcgcgaat ctataattcg cctatatgtt gcctctacca atgccactgt 1680 ggatactgat tcagtcttgg cagccattag tgttggcact ttgcgtcaac atgttggttc 1740 catgcactac cggacagtgg ctagtgtcgt gcaccaggct caggtgcaag gaacgacgct 1800 cagggctact atgatgggta acactgtcgt agtatcacct gaaggaagcc tggttactgg 1860 aacccctgaa gcaagagttg aaataggggg cggttctagt attaggatgg tgggacctct 1920 acagtgggaa agtgtggagg aaccagggca aaccttctct atcagaagcc gttcacggtc 1980 tgtaagaatt gacagaaatg ttgatcttcc tcaacttgag gctgagccca gattgagctc 2040 aaccgtgaga ggattagctg gtagaggagt cgtgtatatt cccaaggatt gccaggcaaa 2100 cagatacttg ggcaccctga acatacgtga catgataata gatttcaagg gtgttcagta 2160 cgaaaagtgg atagctgcag gactggtcat gcctactttc aagattatta tcaggctacc 2220 tgctaatgcc tttactggac tgacatgggt gatgagcttc gatgcttaca accggataac 2280 tagtagaatt actactagtg cagatccagt atacaccctt tcagtcccac attggctcat 2340 ccaccacaag ttgggcacgt tttcatgtga gatagattat ggagaattgt gtggtcatgc 2400 tatgtggttt aagtccacta cttttgaatc tccaagatta catttcacgt gtttaacggg 2460 caacaacaag gagttggcgg cagactggca agctgtcgtg gaactgtatg ccgaattgga 2520 agaggccact tcatttcttg ggaaaccgac cttggttttt gacccaggtg ttttcaatgg 2580 caaattccaa tttctaactt gccctcccat tttcttcgat ttaacagccg tcacagctct 2640 taggagtgct gggctgacgc tgggacaggt cccgatggtt ggtaccacta aagtttataa 2700 tttaaacagc gctcttgtga gttgtgtttt gggtatggga ggtactatta aaggaagggt 2760 acacatttgt gcaccaatct tttatagtat tgttttatgg gttgtcagtg agtggaacgg 2820 gaccactatg gattggaatg aacttttcaa atatcccggg gtgtatgtgg aagaggatgg 2880 aagctttgaa gtgaaaatcc gttctccata tcatcgaacg cctgctagat tgcttgctgg 2940 acaaagtcag agagatatga gctctctaaa tttttatgca atagcgggac ccatcgctcc 3000 atcgggtgag accgcacgac ttcctatcgt tgtacagatt gatgagatcg tgcgcccgga 3060 cttttcttta ctaagtcttg aagatgatta ttttgtgtgg gtggactttt ctgagttcac 3120 tcttgataag gaggaaattg agattggttc tcgtttctct gattttactt caagtacttg 3180 tagagtgtct atgggagaaa atccgtttgc tgcaatgatt gcctgtcatg gattgcacag 3240 cggtgttttg gacctcaaac ttcaatggag tctaaacact gaatttggca agagcagtgg 3300 gagcgttact attactaagc tggttggtga caaagccact ggcctggatg gaccttccca 3360 aatttttgcc atacaaaaac tagagggaac tacggaattg ttggttggga attttgcagg 3420 agcaaaccca aacactcgtt tctccctcta tagtcgatgg ttggcaatta aactggacca 3480 agcaaagagt attaaggtgc tccgtgtctt gtgtaagcct cgtccaggtt tcagttttta 3540 tggaagaacc agcttcccag tctagggtat ctgactttaa aagacccaca tgtacgtatg 3600 tgctttgcta atttcgtata tgtttctgtg ttattatttg ctttaacttg tttaccgctt 3660 tagtgtgttt attttcatgc ttttagtggc gacagtgtgt tgtttgtcct ttggacacac 3720 ttgccttgtt ggacgcaaaa agattttcct ttctttttac tg 3762 //