ID GU972578; SV 1; linear; genomic RNA; STD; VRL; 3533 BP. XX AC GU972578; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSB3 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3533 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3533 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; d25cbcd1dbe5ecc58598a1e2b73c286a. XX FH Key Location/Qualifiers FH FT source 1..3533 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSB3" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D990" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D990" FT /protein_id="ADJ10935.1" FT /translation="MGKFYYSNRRLACWAAAKNTHLGGAVEQWLAAINTDPSFRQTVKE FT DVQENRMRPEAIRMFSWKVGFGPIDNPEKCNWHFVLTGERPEQPTRPVKADEVVVVPQP FT KKVVIPSPPPPPAPYFRAAGAFAPTWSGFIRATVERLTREREESRAAALFAELPLEYPQ FT GAPLKLSLAMKFALLKHTTWRKWYDTSDKRLYGAHPGGPCLPPPPPIQKPPSFEERLHA FT AVERQQCARAFALETSLGLNKAWVGIFDIPSTSVCCADGRTTGGQTIAQEADPLNHRVS FT SNTAPGRAAWISERRSALRRREQAQSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRNAYMPRGLWRGPSTRANYTLDFRLNGIPTGENTLEILYNPVADEEMDDYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPG FT LQYSQEEPRRESLIRLYVASTNATVDPDSVLAAISVGTLRQHIGSLHYRTVASSVHTAQ FT VQGTTLRATMMGNAVVVSPEGGLVTGVPEANVHIGGSSSMRMVGPLAWENVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFKLLTCPPISFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGE FT NPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFALQ FT KLEGTTELLIGNYAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTS FT FPV" FT 3'UTR 3334..>3533 XX SQ Sequence 3533 BP; 848 A; 761 C; 920 G; 1004 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgtt gggctgcggc aaagaacacc 60 catctgggtg gtgccgttga acaatggctg gcggccatta acactgaccc ctccttccgc 120 caaactgtta aggaggatgt ccaggaaaac cggatgcgcc ctgaagccat ccggatgttt 180 tcctggaagg tgggattcgg gcccattgac aacccggaaa aatgcaactg gcatttcgtc 240 cttacgggcg aaaggccaga gcaaccgacc cggccggtta aagccgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca tctccacctc ctcccccagc tccctatttt 360 agggctgctg gggcttttgc accaacctgg tccgggttta ttcgggccac tgtggaaaga 420 ctcacccggg aacgggaaga gtcgagagct gcggcactct ttgccgaact gccattggag 480 tatcctcagg gtgctccttt gaagttgagc ctggcaatga agtttgcctt gctcaagcat 540 accacttgga ggaagtggta tgacactagt gataagcgcc tttacggggc tcatcctggt 600 ggtccttgtc ttcctccccc tcccccaatc caaaaaccac cctcttttga ggagaggtta 660 cacgctgctg tcgaaaggca gcagtgtgct agggcttttg ccctagaaac ttcgctgggt 720 ctgaataagg cctgggtggg aattttcgac atcccaagca cttctgtgtg ctgtgcggat 780 ggtcggacta ctggggggca aacgatagcc caggaagctg accctcttaa tcacagggtc 840 agttccaaca cagcccccgg tagggcagct tggatctctg agcgtcgcag cgctctgaga 900 agaagggagc aagcacagag cttgcagggt cttgctgctc aaactgatat gacgtttgag 960 caggccagga atgcttatct tggcgctgcc gacatgatag agcaaggcct accgttacta 1020 cctcctctga gaaacgctta catgcctcgt ggtctgtgga ggggaccttc taccagagcc 1080 aattatacgc ttgattttag gctcaatggt ataccaacag gggaaaatac tttggaaata 1140 ttgtataacc ctgttgcaga cgaggaaatg gatgactacc gtgacagggg tatgtcagca 1200 gtcgtgattg atgcgcttga aattgccatt aatccttttg ggatgccagg caatccgact 1260 gatcttactg tcgttgcaac atatgggcat gaacgcaata tggagcgtgc ctttattggt 1320 tcttcttcca cgtttcttgg aaatgggtta gcaagagcca ttttctttcc cggtttgcaa 1380 tatagccagg aagaacctag gcgcgaatct ttgattcgct tgtatgttgc ttcaactaac 1440 gccacagttg atcctgattc agttttggcg gccattagtg ttggaacttt gcgccagcac 1500 attggttcgt tgcattatag aactgtggcc agttcggtgc atactgccca ggtgcaaggc 1560 acaaccctaa gggcgactat gatgggtaat gctgtcgtag tttctcctga aggaggcctt 1620 gtaactggtg tgcctgaagc caatgtacat attggtggaa gttccagtat gcgaatggta 1680 ggtcccctgg catgggaaaa tgttgaggaa ccagggcaaa ccttctctat cagaagtcga 1740 tcgcgatctg tgaggattga caggaatgtt gacctacctc aacttgaggc cgagcccaga 1800 ctgagctcga ccgtgagagg attagctggt agaggagtaa tttatattcc caaggattgc 1860 caggcaaata ggtacttggg caccctgaat atacgtgata tgatctcaga cttcaagggt 1920 gtccagtatg aaaagtggat aactgcagga ttagtcatgc ctactttcaa gatagttatt 1980 aggctacctg caaatgcctt tactggattg acatgggtga tgagctttga tgcttataac 2040 cggataacta gtagaattac tgctagtgcg gatcccgtat acaccttgtc agtcccacat 2100 tggcttatcc accataagtt gggcacgttt tcatgtgaga tagactatgg agaattgtgt 2160 ggtcatgcta tgtggtttaa atcaaccaca tttgaatctc caaggttgca tttcacgtgt 2220 ttaacgggca acaacaaaga gttagcggca gactggcaag ctgtcgtgga actgtatgcc 2280 gagcttgaag aggctacgtc ctttcttgga aagcctactt tggtgtttga tccaggggtt 2340 ttcgatggca aattcaagct cttaacttgc cctcccatat cctttgattt gacagccgtc 2400 acggctctta ggagtgctgg gctgacattg gggcaagtcc caatggttgg caccactaag 2460 gtttataatc taaacagcac tcttgtgagt tgtgttttgg gtatgggagg tactgttaga 2520 gggagggtgc acatttgtgc gccaatcttc tacagtattg ttttatgggt cgttagtgag 2580 tggaacggga ccactatgga ttggaatgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaagatggaa gctttgaagt taaaatccgc tctccatatc accgaactcc tgctagattg 2700 cttgctggtc aaagccaaag ggacatgagc tctctgaatt tttatgcaat agcaggaccc 2760 attgctccat cgggggaaac agcacggctc cctattgttg tacaaattga agaaattgtg 2820 cgtccagatc tttccctacc aagttttgag gaagattact ttgtgtgggt ggatttttct 2880 gaattcactc ttgacaaaga agagattgag attggttctc gtttctttga ttttacttca 2940 aatacttgta gggtttctat gggagagaac ccgttcgcag caatgatcgc ttgccatgga 3000 ttacatagtg gtatattgga cctcaaactt caatggagtc taaatactga atttggcaag 3060 agtagtggga gcgtcaccat tacaaagctg gttggtgaca aggccatggg cctggatggg 3120 ccttcacaag tgtttgcctt acagaaactg gagggaacta cggagttgtt gattggaaat 3180 tatgcaggtg caaatccaaa cactcatttt tctctctata gtcgatggat ggcaatcaaa 3240 ttggaccaag cgaagagtat caaggtactc cgcgttttgt gtaaaccccg tccgggtttc 3300 aatttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccatata 3360 catatgttta tttttgttgt aattgtgtgt aatgtcttgt gttattgttt gttttaactt 3420 gttttctgcc tttgtgtgtt tattttcatg cttttggtgg cgatagtgtg ttgtttgtcc 3480 tttggacaca ctgccttgtt ggacacaaaa agatttttcc tttcttttta ctg 3533 //