ID GU972577; SV 1; linear; genomic RNA; STD; VRL; 3455 BP. XX AC GU972577; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CACSB2 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3455 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3455 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; d2a5731d29a7bac33105a527a09739cd. XX FH Key Location/Qualifiers FH FT source 1..3455 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="CACSB2" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3327 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D989" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D989" FT /protein_id="ADJ10934.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAISTDSSFRQTVKE FT DVQLNRERPDAIRMFSWKVGFGPIDNPEKCDWHFVLTGERPSQPTEPVKAQEVEVPPVK FT VVIPSPPPVLRPYFRPIGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGA FT PLKLSLAAKFAMLRHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQERVRKFC FT RMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADPLQHRISTS FT VAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPP FT LRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAV FT VIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQ FT YSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASAVHQAQVQ FT GTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIR FT SRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMISD FT FKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRIIASADPVYTL FT SVPHWLIHHKLGTFSCEIDYGALCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAV FT VELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVP FT MVGTTKVYNLNSALVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNELFK FT YPGVYVEEDGSFEVKIRSPYHRTPARLLTGQNQRDMSSLNFYAIAGHIAPSGETARLPI FT VVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCKVSMGENP FT FAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFALQKL FT EGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTSFP FT V" FT 3'UTR 3328..>3455 XX SQ Sequence 3455 BP; 847 A; 743 C; 898 G; 967 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgtt gggctgctgg gaagaacccc 60 catcttgggg gttctgttga acaatggctg gcggccataa gtactgactc ctccttccgc 120 caaactgtta aggaggatgt ccaattgaac agagaacggc cagatgccat tcgtatgttc 180 tcttggaaag ttgggttcgg gcccattgac aatcccgaaa aatgtgactg gcatttcgtc 240 cttacgggcg agaggccatc acagccgacc gagccggtta aagctcaaga ggtggaggtg 300 ccacctgtga aggtagttat accttcaccg ccccctgttc tgaggcctta ttttaggcct 360 attggggcat ttgcaccaac ccggtccggg tttattcggg ccactgtgga aagactcacc 420 cgggaacggg aagagtcgag agctgcggca ctctttgccg aattgccatt ggagtaccct 480 cagggtgctc ctctgaagtt gagcctggcg gcgaaattcg ccatgctcag acataccact 540 tggaggaagt ggtatgacac tagtgatgag cgccttttgg aggctcatcc tggtggtcct 600 tgtcttcctc cccctccccc aatccaaaat cctccctcct tccaggagag ggtgaggaag 660 ttttgcagga tgaagtcctg cgccaaggct tttgccttgg aaacctccct aggtctcaat 720 aaggcctggg taggtttagt ggacatcccc agtacttctg tgtgctgtgc ggatgggaag 780 actaccggtg ggcagacaat tgcccaggaa gctgatcctt tgcaacatag gatcagtacg 840 tcagtagccc ccggtagggc acaatggatc tccgagcgca ggcaagctct gcggaggaga 900 gagcaagcaa atagcttgca aggtcttgct gctcaaaccg atatgacttt tgagcaggcc 960 aggaatgctt atcttggtgc tgccgacatg attgagcaag gcctaccgct gcttccccct 1020 ctgcgcagcg cttacgcccc taggggtttg tggaggggac cctcgaccag agccaattac 1080 acgctagatt ttaggctcaa tggtattccg accgggacaa acacattgga aatattgtat 1140 aatcctgtgt cggaggaaga gatggaagag taccgggaca ggggcatgtc agctgtggta 1200 attgatgcgc tagaaatagc cataaaccca tttggcatgc ctggaaatcc tacggacttg 1260 actgtcgtag cgacatatgg gcatgagcgc gacatgacgc gcgcctttat tggatctgct 1320 tccacattct tagggaatgg gttagctaga gccattttct ttcctggttt gcaatatagc 1380 caggaggaac caaggcgcga atctataatt cgcctatatg ttgcctctac caatgccact 1440 gtggatactg attcagtctt ggcagccatt agtgttggca ctttgcgtca acatgttggt 1500 tccatgcact accggacagt ggctagtgcc gtgcaccagg ctcaggtgca aggaacgacg 1560 ctcagggcta ctatgatggg taacactgtc gtagtatcac ctgaaggaag cctggttact 1620 ggaacccctg aagcaagagt tgaaataggg ggcggttcta gtattaggat ggtgggacct 1680 ctacagtggg aaagtgtgga ggaaccaggg caaaccttct ctatcagaag ccgttcacgg 1740 tctgtgagga ttgatagaaa cgttgatctt cctcaacttg aggctgagcc tagattgagc 1800 tcaaccgtga gaggattagc tggtagagga gtaatttata ttcccaagga ttgccaggca 1860 aatagatact tgggcaccct gaacatacgt gatatgatct cagattttaa gggtgtccag 1920 tatgaaaaat ggataactgc agggttagtc atgcctactt tcaagatagt tgttaggcta 1980 cctgcaaatg cctttactgg gttgacatgg gtgatgagct ttgatgctta caaccggata 2040 actagtagaa ttattgctag tgcagatcct gtatacacct tatcagttcc ccattggctc 2100 atccatcata agttgggcac gttttcatgt gagatagact atggagcatt gtgtggccat 2160 gccatgtggt ttaaatccac aacatttgag tctccgagat tgcatttcac gtgtttaacg 2220 ggcaacaaca aggaactggc ggcagactgg caagctgtcg tggagttata tgccgaattg 2280 gaagaggcca cttcttttct tgggaaacca accttggttt ttgacccagg agttttcaat 2340 ggcaaattcc aattcctgac ttgccctccc atattctttg atctaacagc cgtcacggct 2400 cttaagagtg ctgggctaac attgggacaa gttccaatgg ttggcacaac caaagtttat 2460 aatttaaaca gcgctcttgt gagttgtgtt ctaggtatgg gaggtactat tagaggaaag 2520 gtacacattt gtgcgccaat cttctatagt attgttttgt gggttgttag tgagtggaac 2580 gggaccacta tggattggaa tgaacttttc aagtatcccg gggtgtatgt ggaagaagat 2640 ggaagttttg aagtcaaaat ccgttctcca tatcaccgaa ctcctgctag attgcttact 2700 ggtcaaaacc agagggacat gagctctctg aatttttatg caatagcagg acacattgct 2760 ccatcggggg aaacagcacg gctccctatt gttgtacaaa ttgaagaaat tgtgcgtcca 2820 gatctttccc taccaagttt tgaggaagat tactttgtgt gggtggattt ttctgaattc 2880 actcttgaca aagaagagat tgagattggt tctcgtttct ttgattttac ttcaaatact 2940 tgtaaggttt ctatgggaga gaacccgttt gcagcaatga tcgcttgcca tggattacat 3000 agtggtatat tggacctcaa acttcaatgg agtctaaata ctgaatttgg caagagcagt 3060 gggagcgtca ccattacaaa gctggttggt gacaaggcca tgggcctgga tgggccttca 3120 caagtgtttg ccttacagaa actggaggga actacggagt tgttgattgg aaattttgca 3180 ggtgcaaatc caaacactca tttttctctc tatagtcgat ggatggcaat caaattggac 3240 caagcgaaga gtatcaaggt actccgcgtt ttgtgtaaac cccgtccggg ttttaatttt 3300 tatggaagaa ccagctttcc agtctagggt atctgacttt aaaagaccca tatacatatg 3360 tttatttttg ttgtaattgt gtgtagtgtt ttgtgttatt gtttgtttta acttgttttc 3420 tgcctttgtg tgtttatttt cctttctttt tactg 3455 //