ID GU972575; SV 1; linear; genomic RNA; STD; VRL; 3485 BP. XX AC GU972575; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CAZINA5 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3485 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3485 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 5f7c94e4a5b96fe8488b20b10b2e4fb3. XX FH Key Location/Qualifiers FH FT source 1..3485 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Zinfandel" FT /isolate="CAZINA5" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D987" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D987" FT /protein_id="ADJ10932.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINTDSSFRQTVKE FT DVQENREQPTAVRMFSWKIGFGPIDNPEKCDWHFVLTGERPAQPSRPVKADEVVVVPQP FT KKVVTPSPPPPPVPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ FT GAPLKLSLAAKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQERVRE FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADPLQHRIS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRASIGSASTFLGNGLARAIFFPG FT LQYSQEEPRREFIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASAVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDTI FT SDFKGVQYERWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITISADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIILWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIDEIVRPDLSLPSFEGGYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLVGPSQVFAIQ FT KLEGVTELLVGNFAGANPNTHFSLYSRWMAIKLDQAKSTKVLRVLCKPRSGFSFYGRTS FT FPV" FT 3'UTR 3334..>3485 XX SQ Sequence 3485 BP; 831 A; 744 C; 926 G; 984 T; 0 other; atgggcaaat tttattattc caacaggcga cttgcctgtt gggctgctgg gaagaaccct 60 catcttgggg gttctgttga gcaatggctg gcggccatta atactgattc ctccttccgc 120 caaactgtta aggaggatgt tcaggaaaac agagaacagc caactgctgt tcgaatgttt 180 tcttggaaaa ttgggttcgg gcccattgac aatcccgaga aatgcgattg gcatttcgtc 240 cttacgggcg aaaggccagc gcaaccgtcc cggccggtca aagccgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgacccct tcaccgcctc ctcccccagt tccctatttt 360 agggctgttg gggcttttgc accaacccgg tccgggttta ttcgggccac tgtggaaagg 420 ctcacccggg aacgggagga gtcgagagct gcggcactct ttgccgaatt gccattggag 480 taccctcagg gtgctcctct gaagttgagc ctggcggcga aattcgccat gctcaaacat 540 accacttgga ggaagtggta tgacactagt gatgagcgcc ttttggaggc tcatcctggt 600 ggtccttgtc ttcctccccc tcccccaatc caaaatcctc cctccttcca ggagagggtg 660 agggagtttt gcaggatgaa gtcctgcgcc aaggcttttg ccttggaaac ctccctaggt 720 ctcaataagg cctgggtggg tttagtggac atccccagta cttctgtgtg ctgtgcggat 780 gggaagacta ccggtgggca gacaattgcc caggaagctg atcctttgca acataggatc 840 agtacgtcag tagcccccgg tagggcacaa tggatctccg agcgcaggca agctctgcgg 900 aggagagagc aagcaaatag cttgcaaggt cttgctgctc aaaccgatat gacttttgag 960 caggccagga atgcttatct tggtgctgcc gacatgattg agcaaggcct accgctgctt 1020 ccccctctgc gcagcgctta cgcccctagg ggtttgtgga ggggaccctc gaccagagcc 1080 aattacacgc tagattttag gctcaatggt attccgaccg ggacaaacac attggaaata 1140 ttgtataatc ctgtgtcgga ggaagagatg gaagagtacc gggacagggg catgtcagct 1200 gtggtaattg atgcgctaga aatagccata aacccatttg gcatgcctgg aaatcctacg 1260 gacttgactg tcgtagcgac atatgggcat gagcgcgaca tgacgcgcgc ctctattgga 1320 tctgcttcca cattcttagg gaatgggtta gctagagcca ttttctttcc tggtttgcaa 1380 tatagccagg aggaaccaag gcgcgaattt ataattcgcc tatatgttgc ctctaccaat 1440 gccactgtgg atactgattc agtcttggca gccattagtg ttggcacttt gcgtcaacat 1500 gttggttcca tgcactaccg gacagtggct agtgccgtgc accaggctca ggtgcaagga 1560 acgacgctca gggctactat gatgggtaac actgtcgtag tatcacctga aggaagcctg 1620 gttactggaa cccctgaagc aagagttgaa atagggggcg gttctagtat taggatggtg 1680 ggacctctac agtgggaaag tgtggaggaa ccagggcaaa ccttctctat cagaagccgt 1740 tcacggtctg tgaggattga tagaaacgtt gatcttcctc aacttgaggc tgagcccaga 1800 ttgagctcaa ccgtgagagg attagctggt agaggagtaa tttatattcc caaggattgc 1860 caggcaaaca ggtacttggg caccctgaat atacgtgaca cgatctcaga ttttaagggt 1920 gttcagtatg aaaggtggat aactgcaggg ttggtcatgc ctacttttaa gatagttgtt 1980 aggctacctg caaatgcctt tactggattg acatgggtga tgagctttga tgcttataat 2040 cggataacta gtagaattac tattagtgcg gatcctgttt ataccctttc agtccctcat 2100 tggcttatcc accataagtt gggcacgttt tcatgtgaaa ttgactatgg agaattgtgt 2160 ggtcatgcta tgtggttcaa gtccacaaca tttgaatctc ctaggttgca ttttacatgt 2220 ttgacgggca acaacaaaga gttggcagca gattggcaag ctgttgtgga actatatgct 2280 gaattggaag aagccacatc ttttcttggg aaaccaacat tggtttttga cccaggtgtt 2340 tttgatggta aattccagtt tttaacttgc cctcccattt tctttgattt aacagccgtc 2400 acggctctta ggagtgctgg actgacattg ggacaggtcc caatggttgg tactactaag 2460 gtgtataacc taaatagcac tcttgtgagt tgtgttttgg gcatgggagg tactattaga 2520 ggaagggtgc atatttgtgc tccaatcttc tatagtataa ttttgtgggt tgttagtgag 2580 tggaacggga ccactatgga ctggaacgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaggatggaa gctttgaagt taaaatccgt tctccatatc accgaacgcc tgctaggttg 2700 cttgctggac aaagccagag ggacatgagt tctctgaact tttatgcaat agcgggacct 2760 attgctccat cgggtgagac tgcacgactt cctattgttg tacaaattga tgaaatcgtg 2820 cgcccagacc tctctctacc gagttttgaa ggtggttatt ttgtgtgggt ggatttttct 2880 gagttcactc ttgataaaga agaaattgag attggttctc gtttctttga tttcacttca 2940 agtacttgta gggtgtctat gggagaaaac ccatttgctg caatgattgc ttgccacgga 3000 ttgcacagtg gtgtattaga cctcaagctt caatggagtc taaacactga gtttggtaag 3060 agcagcggga gcgtcactat cacgaagctg gttggtgaca aagccacggg tctggttggg 3120 ccttcacaag tttttgccat acaaaaacta gagggagtta cggagttgtt ggttgggaat 3180 tttgcaggag caaacccaaa tactcatttc tccctctata gtcgatggat ggcaattaaa 3240 ttggatcaag caaagagtac taaagtactc cgtgtcttgt gtaaaccccg ttcaggtttc 3300 agtttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccaagtg 3360 tgcctacgcg tttttaggtt gtgtgtgttg ttttgtatta tagtttgctt taacttgttt 3420 actgctttag tgtgttttgt ttcatgcctt gttggacaca aaaagatttt cctttctttt 3480 tactg 3485 //