ID GU972574; SV 1; linear; genomic RNA; STD; VRL; 3762 BP. XX AC GU972574; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CAZINA4 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3762 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3762 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 8c19cf8bfbf88995af3e77d85f1af470. XX FH Key Location/Qualifiers FH FT source 1..3762 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Zinfandel" FT /isolate="CAZINA4" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT 5'UTR 1..232 FT CDS 233..3565 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D986" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D986" FT /protein_id="ADJ10931.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINTDPSFRQTVKE FT DVQENREQPTAVRMFSWKVGSGPIDNPEKCDWHFVLTGERPAQPSRPVKADEVVVVPQP FT KKVVIPTPPPPPAPYFRAVGAFAPTRSGFVRAIVERLTRLREESRAAALFAELPLEYPQ FT GAPLKLSLAAKFAMLKHTTWRKWYDTRDERLLEAHPGGPCLPPPPPIQNPPSFQERVRE FT FCRMKSCAKAFALETSLGLNKAWVGLVDISSTSVCCADGKTTGGQTIAQEADPLQHRIS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSREIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTEVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIDEIVRPDFSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCKVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTVTKLVGDKATGLDGPSQIFAIQ FT KLEGVTDLLIGNFAGANPNTHFSLFSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS FT FPV" FT 3'UTR 3566..>3762 XX SQ Sequence 3762 BP; 916 A; 813 C; 952 G; 1081 T; 0 other; atgaaaaatg tttacgtttt cttacgttac cgtgatttca cttttcttta gccaagagtt 60 taaaaaactc aaaagtgaaa ctgccaagag tttaagaaac tcacaaagcg aagagtttaa 120 gaaactcatc attgcttttt tgttctttta ttttgcgctt tatttgttta gcattttatt 180 taattctttt aaaaagcttt tgttttgttt ttctttttct ttacttgccc ttatgggcaa 240 attttattat tccaacaggc ggcttgcctg ttgggctgct gggaagaacc ctcatcttgg 300 gggttctgtt gaacaatggc tggcggccat taacactgat ccctccttcc gccaaactgt 360 taaggaggat gtccaagaaa accgagaaca gccaactgct gttcgaatgt tttcttggaa 420 agttgggtcc gggcccattg acaatcccga gaaatgcgac tggcattttg tccttacggg 480 cgagaggcca gcgcagccgt cccggccggt taaagccgat gaggttgtgg tggtgccaca 540 accgaagaag gtggtgattc caacaccacc tcctccccca gctccctact ttagggctgt 600 tggggctttt gcaccaaccc ggtccgggtt tgttcgggcc attgtggaaa ggctcacccg 660 gctacgggag gagtcgagag ctgcggcact ctttgccgaa ttgccattgg agtaccctca 720 gggtgctcct ctgaagttga gcctggcggc gaaattcgct atgctcaaac ataccacttg 780 gaggaagtgg tatgacacta gagatgagcg ccttttggag gctcatcctg gtggtccttg 840 tcttcctccc cctcccccaa tccaaaatcc tccctccttc caggagaggg tgagggagtt 900 ttgcaggatg aagtcctgcg ccaaggcttt tgccttggaa acctccctag gtctcaataa 960 ggcctgggta ggtttagtgg acatctccag tacttctgtg tgctgtgcgg atgggaagac 1020 taccggtggg cagacaattg cccaggaagc tgatcctttg caacatagga tcagtacgtc 1080 agtagccccc ggtagggcac aatggatctc cgagcgcagg caagctctgc ggaggagaga 1140 gcaagcaaat agcttgcaag gtcttgctgc tcaaaccgat atgacttttg agcaggccag 1200 gaatgcttat cttggtgctg ccgacatgat tgagcaaggt ctaccgctgc ttccccctct 1260 gcgcagcgct tacgccccta ggggtttgtg gaggggaccc tcgaccagag ccaattacac 1320 gctagatttc aggctcaatg gtattccgac cgggacaaac acattggaaa tattgtataa 1380 tcctgtgtcg gaggaagaga tggaagagta ccgggacagg ggcatgtcag ctgtggtaat 1440 tgatgcgcta gaaatagcca taaacccatt tggcatgcct ggaaatccta cggacttgac 1500 tgtcgtagcg acatatgggc atgagcgcga catgacgcgc gcctttattg gatctgcttc 1560 cacattctta gggaatgggt tagctagagc cattttcttt cctggtttgc aatatagcca 1620 ggaggaacca aggcgcgaat ctataattcg cctatatgtt gcctctacca atgccactgt 1680 ggatactgat tcagtcttgg cagccattag tgttggcact ttgcgtcaac atgttggttc 1740 catgcactac cggacagtgg ctagtaccgt gcaccaggct caggtgcaag gaacgacgct 1800 cagggctact atgatgggta acactgtcgt agtatcacct gaaggaagcc tggttactgg 1860 aacccctgaa gcaagggttg aaataggggg cggttctagt attaggatgg tgggacctct 1920 acagtgggaa agtgtggagg aaccagggca aaccttctct atcagaagcc gttcacggtc 1980 tgtgaggatt gatagaaacg ttgatcttcc tcaacttgag gctgagccca gactgagctc 2040 aaccgtgaga ggattagctg gtagaggagt aatctacatt cccaaggatt gccaggcaaa 2100 tagatacttg ggcaccctga atatacgtga tatgatctca gacttcaagg gtgtccagta 2160 tgaaaagtgg ataactgcag gattagtcat gcctactttc aagatagtta ttaggctacc 2220 tgcaaatgcc tttactggat tgacatgggt gatgagcttt gatgcttata accggataac 2280 tagtagaatt actgctagtg cggatcccgt atacaccttg tcagtcccac attggcttat 2340 ccaccataag ttgggcacgt tttcacgtga gatagactat ggagaattgt gtggtcatgc 2400 tatgtggttt aaatcaacca catttgaatc tccaaggttg catttcacgt gtttaacggg 2460 caacaacaag gagttagcgg cagactggca agctgtcgta gaactatatg ccgaattgga 2520 agaggccact tctttccttg ggaaaccaac tttggttttt gacccaggtg ttttcaatgg 2580 caaatttcaa tttcttactt gccctcccat attctttgat ttaacggccg tcacggctct 2640 taggagtgct gggctgacat tggggcaagt cccaatggtt ggcaccactg aggtttataa 2700 tctaaacagc actcttgtga gttgtgtttt gggtatggga ggtactgtta gagggagggt 2760 gcacatttgt gcgccaatct tctacagtat tgttttatgg gtcgttagtg agtggaacgg 2820 gaccactatg gactggaatg aactttttaa gtatcccggg gtgtatgtgg aagaggatgg 2880 aagttttgaa gttaaaattc gctctccata tcaccgaaca cctgctagat tgcttgctgg 2940 tcaaagtcag agggatatga gctccctaaa cttttatgca atagcaggac ctatcgctcc 3000 atcgggcgag actgcacgac ttcccattgt tgtacaaatt gatgagatcg tgcgccccga 3060 cttttcccta ccaagttttg aagatgatta ctttgtttgg gtggattttt ctgaattcac 3120 tctagacaaa gaagaaattg agattggttc tcgtttcttt gattttactt caagtacttg 3180 taaagtatct atgggagaaa atccatttgc tgcaatgatt gcctgccatg ggttgcacag 3240 tggtgtatta gacctcaaac ttcaatggag tctaaacacc gaatttggca agagcagcgg 3300 gagcgttact gttacgaagc tggttggtga caaagccaca ggtctggacg gaccttccca 3360 aatctttgcc atacaaaaac tagagggagt tacagatttg ttgattggga actttgcagg 3420 tgcaaaccca aacactcatt tctctctttt tagtagatgg atggcaataa aattggacca 3480 agcaaagagt attaaagtac tccgcgtttt gtgcaagcct cgtccaggtt tcagctttta 3540 tggaagaact agcttcccag tctagggtat ctgactctaa aagacccaga tgtgcgtata 3600 tgctttatta gttatgtgtg ttttcttgta ttgtaatttg ctttgacttg tttactgctt 3660 tagtgtgctt gttttcatgc ttatagtggc gacagtgtgt tgtttgtcct ttggacacac 3720 ttgccttgtt ggacgcaaaa agattttcct ttctttttac tg 3762 //