ID GU972572; SV 1; linear; genomic RNA; STD; VRL; 3533 BP. XX AC GU972572; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CAZINA2 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3533 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3533 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; fe926881c59e211501a4765bf95ea3f0. XX FH Key Location/Qualifiers FH FT source 1..3533 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Zinfandel" FT /isolate="CAZINA2" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D984" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D984" FT /protein_id="ADJ10929.1" FT /translation="MGKFYYSNRRLACWAAAKNTHLGGAVEQWLAAINTDPSFRQTVKE FT DVQENRARPEAIRMFSWKVGFGPIDNPEKCNWHFVLTGERPEQPTRPVKADEVVVVPQP FT KKVVIPSPPPPPAPYFRAAGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ FT GAPLKLSLAMKFAMLKHTTWRKWYDTSDERLFEAHPGGPCLPPPPPIQSPPSFRERLRE FT TCRVKSCARAFALETSLGLNKAWVGLVNIPSTSVCCADGRTTGGQTIAQEADPLQHRVS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDVTFEQARNAYLGAADMIEQGLPLL FT PPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVGTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGHTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFRGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITTSADPVY FT TLSVPHWLIHHKLGTFSCEVDYGELCGHAMWFKATTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPVVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGE FT NPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTIAKLVGDKAMGLDGPSQVFALQ FT KLEGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTS FT FPV" FT 3'UTR 3334..>3533 XX SQ Sequence 3533 BP; 848 A; 771 C; 926 G; 988 T; 0 other; atgggcaaat tttattattc caacaggcgt cttgcctgct gggctgcggc aaagaacacc 60 catctgggtg gtgccgttga acaatggctg gcggccatta acactgatcc ctccttccgc 120 caaactgtta aggaggatgt ccaggaaaac cgggcgcgcc ctgaggccat ccggatgttt 180 tcctggaagg tgggattcgg gcccattgac aacccggaaa aatgcaactg gcatttcgtc 240 cttacgggcg aaaggccaga gcaaccgacc cggccggtta aagccgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca tctccacctc ctcccccagc tccttatttt 360 agggcggctg gagcttttgc accaacccgg tccgggttta ttcgggccac tgtggaaaga 420 ctcacccggg aacgggaaga gtcgagagct gcggcactct ttgccgaatt gccattggag 480 taccctcaag gtgctccttt gaagttgagc ttggcgatga agttcgccat gctcaaacat 540 accacttgga ggaagtggta tgacaccagt gatgagcgtc tttttgaggc tcatcctggt 600 ggcccctgcc ttcctccccc tcccccaatc caaagccctc cttcctttcg tgaaaggttg 660 agggaaactt gcagggtaaa atcctgcgcc agggcctttg ccctggaaac ctccctgggc 720 cttaataagg cctgggtggg tttagtgaat atccccagca cttctgtatg ctgtgcggat 780 ggaaggacta ccggtgggca aacgattgct caagaagctg accctttgca acatagggtt 840 agcacatcag ttgcccccgg tagggcacag tggatctctg agcgcagaca ggctctgcga 900 aggagagagc aagcgaatag cttgcagggt ctcgctgctc aaacagacgt gacttttgag 960 caggccagga atgcctatct tggtgctgcc gacatgatcg agcaaggctt accgctgctt 1020 ccccctctac gcaatgctta tgcccctagg ggtttgtgga ggggaccctc aaccagagcc 1080 aattacacgt tagattttag gctcaatggt attccgactg ggacaaacac attggaaata 1140 ttgtacaatc ccgtgtcgga ggaagagatg gaagagtacc gagatagggg catgtcagct 1200 gtggtaattg acgcgctaga gatagccata aacccatttg gcatgcctgg aaatccaacg 1260 gacttgactg tcgttgcaac atatgggcat gagcgtgata tgacacgcgc cttcattgga 1320 tctgcttcca catttttagg gaatgggttg gctagagcca ttttctttcc tggcttacaa 1380 tatagtcagg aggaaccaag gcgcgaatct attattcgcc tatatgttgc ctctactaat 1440 gccactgtag gtactgattc agtcttggcg gccatcagtg ttggcactct gcgtcaacat 1500 gtaggctcca tgcactaccg aacagtggct agtaccgtgc accaggccca ggtgcaagga 1560 acaacactca gagctactat gatgggtaat actgttgtag tgtctcctga gggaagccta 1620 gttactggga cccctgaagc aagagtagaa atagggggtg gttctagtat taggatggtg 1680 ggacctttgc aatgggagag tgtggaggaa ccagggcata ccttctctat cagaagtcgt 1740 tcgcgatccg tgaggattga tagaaatgtt gatcttcctc aacttgaggc cgagcctaga 1800 ttgagctcga ctgtgagagg attagctggt agaggagtga tatatattcc caaggattgc 1860 caggcaaata ggtacttggg caccctgaac atacgtgata tgatctcaga tttcaggggt 1920 gtccagtatg agaaatggat aactgcaggt ttagtcatgc cgacctttaa aatagttgtc 1980 agactacctg cgaatgcctt tactggattg acgtgggtta tgagctttga tgcttacaat 2040 cggataacta gtagaattac tactagtgct gatcctgttt ataccctgtc agtcccgcac 2100 tggcttatcc accacaagtt gggtacgttc tcttgtgaag tagactatgg agagttgtgt 2160 ggtcatgcaa tgtggtttaa agctacaaca tttgaatctc ctaggctaca tttcacgtgc 2220 ctaactggta ataataaaga gctggcagca gactggcaag ctgttgttga gctttatgca 2280 gaactggagg aagccacttc tttcttggga aagcccaccc tggtttttga tccaggtgtc 2340 tttgatggca aattccagtt tctaacttgc cctcccatat tctttgatct aacggccgtc 2400 acggctctta ggagtgctgg gcttacgctg ggccaggttc cagtggtagg cactaccaag 2460 gtttataatc taaacagcac ccttgtgagt tgtgtgttag gtatgggggg tactattaga 2520 ggaaaggttc acatttgtgc accaatcttt tatagtattg ttttatgggt cgttagcgag 2580 tggaacggga ccactatgga ttggaatgaa ctttttaaat atcccggggt gtatgtggaa 2640 gaagatggaa gctttgaagt taaaatccgt tctccatatc accgaactcc tgctagattg 2700 cttgctggtc aaagccagag ggacatgagc tctctgaatt tctatgcaat agcagggccc 2760 attgctccat cgggggaaac agcacgactc cctattgttg tacaaattga agagattgtg 2820 cgtccagacc tttccctacc aagttttgag gaagattact ttgtgtgggt ggatttctct 2880 gaattcactc ttgacaaaga agagattgag attggttctc gtttctttga ttttacttca 2940 aatacttgta gggtttctat gggagagaac ccgtttgcag caatgattgc ttgccatgga 3000 ttacatagtg gtatattgga cctcaaactt caatggagtc taaatactga atttggcaag 3060 agcagtggga gcgtcaccat tgcaaagctg gttggtgaca aggccatggg cctggatggg 3120 ccttcacaag tgtttgcctt acagaagctg gagggaacta cggagttgtt gattggaaat 3180 tttgcaggtg caaatccaaa cactcatttt tctctttata gtcggtggat ggcaatcaaa 3240 ttggaccaag caaagagtat caaggtactc cgcgttttgt gtaaaccccg tccgggtttt 3300 aatttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccatata 3360 catatgttta tttttgttgt aattgtgtgt aatgttttgt gttattgttt gttttaactt 3420 gttttctgcc tttgtgtgtt tattttcatg cttttagtgg cgacagtgtg ttgtttgtcc 3480 tttggacaca cttgccttgt tggacgcaaa aagattttcc tttcttttta ctg 3533 //