ID GU972571; SV 1; linear; genomic RNA; STD; VRL; 3528 BP. XX AC GU972571; XX DT 28-JUN-2010 (Rel. 105, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate CAZINA1 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3528 RX DOI; 10.1016/j.virusres.2010.05.017. RX PUBMED; 20540977. RA Oliver J.E., Vigne E., Fuchs M.; RT "Genetic structure and molecular variability of Grapevine fanleaf virus RT populations"; RL Virus Res. 152(1-2):30-40(2010). XX RN [2] RP 1-3528 RA Oliver J.E., Fuchs M.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West RL North Street, Geneva, NY 14456, USA XX DR MD5; 07195d14b0f9bb580c5389897e596c87. DR EuropePMC; PMC3550808; 23730004. XX FH Key Location/Qualifiers FH FT source 1..3528 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Zinfandel" FT /isolate="CAZINA1" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="leaf" FT /collection_date="16-Oct-2007" FT /db_xref="taxon:12274" FT CDS 1..3333 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B), FT and coat protein (2C)" FT /db_xref="GOA:D9D983" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9D983" FT /protein_id="ADJ10928.1" FT /translation="MGKFYYSNTPLACWAAGKNPHLGGSVEQWLAAINADPSFRQTVKE FT DVQENRERPTAVRMFSWKIGSGPIDNPEKCNWHFVFTGERPAQPSRPAKVDEVVVVPQP FT KKVVIPAPPPPPAPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ FT GAPLKLSLVMKFAMLKHATWRKWYDTSDERLLEAHPGGPCLPSPPPIQSPPSFREKVRE FT FCRMKSCARAFALETSLGLNRAWMGSVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVS FT TSVAPGRAQWISERRQALRRREQANSLQGPAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMDEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFSDFTSSTCRVSMGE FT NPFAAMVACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQVFAIQ FT KLEGVTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRSGFSFYGRTS FT FPV" FT 3'UTR 3334..>3528 XX SQ Sequence 3528 BP; 852 A; 759 C; 922 G; 995 T; 0 other; atgggcaaat tttattattc caacacccct ctagcctgtt gggctgctgg gaagaaccct 60 catctggggg gttctgttga acaatggctg gcggccatta atgccgatcc ctccttccgc 120 caaactgtta aggaggatgt ccaagaaaat agggaacggc caactgctgt tcgaatgttt 180 tcttggaaga ttgggtccgg gcccattgac aacccggaaa aatgtaactg gcacttcgtc 240 tttacgggcg aaaggccagc acagccgtcc cgaccggcca aagtcgatga ggttgtggtg 300 gtgccacaac cgaagaaggt ggtgattcca gcaccacctc ctcccccagc tccctatttt 360 agggctgttg gggcttttgc accaacccgg tccgggttta ttcgggccac tgtggaaaga 420 ctcacccggg aacgggaaga gtcgagagct gcggcactct ttgccgaact accattggag 480 tatcctcagg gtgctccttt gaagttgagt ctggtgatga aattcgccat gcttaagcat 540 gccacttgga ggaagtggta tgacactagt gatgagcgcc ttttggaggc tcatcctggt 600 ggtccttgtc ttccttctcc tcccccaatc caaagccctc cctccttccg ggagaaggtg 660 agggaatttt gcaggatgaa gtcctgcgcc agggcttttg ccttggaaac ctctctgggc 720 ctcaacaggg cctggatggg ttcggtggac atccccagca cttctgtgtg ctgtgcggat 780 ggaaggacta ccggtgggca aacaattgct caggaagctg atcccttgca acacagggtt 840 agcacatccg tggcccccgg tagggcacaa tggatctctg agcgcagaca ggctctgcga 900 aggagagagc aagcaaatag cttgcagggt cctgctgctc aaactgatat gactttcgag 960 caggccagga atgcttatct tggtgctgcc gacatgattg agcaaggctt accgctgctt 1020 ccccctttgc gcagcgcata tgcccctagg ggtttgtgga ggggaccctc aaccagagcc 1080 aattacacgt tagatttcag gctcaatggt attccgaccg ggacaaacac gctagaaata 1140 ttgtataatc ccgtgtcgga ggaagagatg gatgagtacc gggatagagg catgtctgca 1200 gtcgtaatcg atgcactaga aatagccata aatccttttg gcatgcctgg aaatcctacg 1260 gacttaactg tcgttgcaac atatgggcat gagcgtgaca tgacacgcgc ctttattgga 1320 tctgcttcca catttcttgg gaatgggtta gctagagcca ttttctttcc tggcttgcaa 1380 tatagccagg aggaaccaag gcgtgaatct ataattcgct tatatgttgc ctcaaccaat 1440 gccactgtag atactgattc agtcttggca gccattagtg ttggcacttt gcgtcagcat 1500 gttggttcca tgcactatcg aacagtggcg agtaccgtgc accaggccca ggtgcaagga 1560 acgaccctta gggctactat gatgggtaat actgttgtag tgtcacctga aggaagccta 1620 gttactggaa cccctgaagc aagagtcgaa attgggggtg gttctagtat taggatggtg 1680 ggacctctgc aatgggagag tgtggaggaa ccagggcaaa ccttctctat tagaagtcgt 1740 tcgcggtctg tgaggattga tagaaatgtt gatcttcctc aacttgaggc tgagcccaga 1800 ttgagttcaa ctgtgagagg actagctggt agaggagtaa tttacattcc caaggattgc 1860 caggcaaata gatacttggg caccctgaat atacgtgata tgatctcaga cttcaagggt 1920 gtccagtatg aaaagtggat aactgcagga ttagtcatgc ctactttcaa gatagttatt 1980 aggctacctg caaatgcctt tactggattg acatgggtga tgagctttga tgcttataac 2040 cggataacta gtagaattac tgctagtgcg gatcccgtat acaccttgtc agtcccacat 2100 tggcttatcc accataagtt gggcacgttt tcatgtgaga tagactatgg agaattgtgt 2160 ggtcatgcta tgtggtttaa atcaaccaca tttgaatctc caaggttgca tttcacgtgt 2220 ttaacgggca acaacaaaga gttagcggca gactggcaag ctgtcgtaga actatatgcc 2280 gaattggaag aggccacttc tttccttggg aaaccaactt tggtttttga cccaggtgtt 2340 ttcaatggca aatttcaatt tcttacttgc cctcccatat tctttgattt aacggccgtc 2400 acggctctta ggagtgctgg gctgacattg gggcaagtcc caatggttgg caccactaag 2460 gtttataatc taaacagcac tcttgtgagt tgtgttttgg gtatgggagg tactgttaga 2520 gggagggtgc acatttgtgc gccaatcttc tacagtattg ttttatgggt cgttagtgag 2580 tggaacggga ccactatgga ctggaatgaa ctttttaagt atcccggggt gtatgtggaa 2640 gaggatggaa gctttgaagt taaaattcgt tctccatatc accgaacacc tgctagattg 2700 ctcgctggac aaagtcagag ggacatgagc tctctgaact tttatgcaat agcgggacct 2760 attgctccat cgggtgagac tgcacgactt cctattgttg tacaaattga tgaaatcgtg 2820 cgcccagacc tctctctgcc aagttttgaa gatgattact ttgtgtgggt ggatttttct 2880 gagttcactc ttgataaaga agaaattgag attggttctc gtttctctga ttttacttca 2940 agtacttgta gggtgtctat gggagaaaac ccatttgctg caatggttgc ttgccatgga 3000 ttgcacagtg gtatattaga cctcaagctt caatggagtc taaacactga gtttggtaag 3060 agcagcggga gcgtcactat cacgaagctg gttggtgaca aagctacggg tctggacggg 3120 ccttcacaag tttttgccat acaaaaacta gagggagtta cggagttgtt gattgggaat 3180 tttgcaggag caaacccaaa tactcatttc tccctttata gtcgatggat ggcaatcaaa 3240 ttggatcaag caaagagtat taaagtactc cgtgtcttgt gtaaaccccg ttcaggtttc 3300 agtttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa gacccaagtg 3360 tacatacgcg tctttaggtt gtgtgtgttg ttttgtatta tagttttttt aacttgttta 3420 ctgctttagt gtgttttgtt tcatgctttt agtggcgaca gtgtgttgtt tgtcctttgg 3480 acacacttgc cttgttggac acaaaaagat tttcctttct ttttactg 3528 //