ID GU968733; SV 2; linear; genomic RNA; STD; VRL; 3960 BP. XX AC GU968733; XX DT 31-MAR-2011 (Rel. 108, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 3) XX DE Turnip ringspot virus isolate CV-3 segment RNA2, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-3960 RA Chen Y.-K., Chang Y.-S.; RT "Occurrence of Turnip ringspot virus in Taiwan"; RL Unpublished. XX RN [2] RP 1-3960 RA Chen Y.-K., Chang Y.-S.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology, National Chung Hsing University, No. 250 Kuo-Kuang Road, RL Taichung 40227, Taiwan XX RN [3] RC Sequence update by submitter RP 1-3960 RA Chen Y.-K., Chang Y.-S.; RT ; RL Submitted (09-DEC-2015) to the INSDC. RL Plant Pathology, National Chung Hsing University, No. 250 Kuo-Kuang Road, RL Taichung 40227, Taiwan XX DR MD5; df85a38387ae3e1e017230130fc7578e. XX CC On Dec 9, 2015 this sequence version replaced gi:326365179. XX FH Key Location/Qualifiers FH FT source 1..3960 FT /organism="Turnip ringspot virus" FT /segment="RNA2" FT /host="Brassica campestris" FT /strain="TW" FT /isolate="CV-3" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collection_date="Dec-2007" FT /db_xref="taxon:392504" FT CDS 392..3679 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:F2VQ15" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F2VQ15" FT /protein_id="ADZ54705.2" FT /translation="MNNVKGYRNCTYCLTPGYYKEQAKDFSYAPQEKYVKFLKVSPFSF FT VCFITFCHIITYLEVLFNVCFGFNSWATETIRSWMLDIDSKANKAYTRLYSIREWSSGR FT QVTVQHSYFTAKMETVMERGIAAKALELRNDAALNKGRHFTGLKDHIPAGKDLYVYKQK FT LFEMLKGSKRSREVDISRIKGCEVVEMKHIDVGTLSPGENQIINVKIVKDEMLPQPEQS FT DYALVSHSNESKYANAMHVGAIEVIFNSYASPSSDIVGGMILVDTCHKSVANAVRSVFV FT TGLAGGKLIRVLMYPNTLVEIGPRMNDRFKLVCTTSNSDISEGFNLASVKVNVVGCTQS FT LMTQYVPQPLLDNLLNKEQGTVVEYLGQLSYVMHHSNHITEEFLANQTMEFDLGKKLQL FT IPSSSGASLAQSASMRYVVGPKQRLHSAESDVEISGFDKRKNNARRSVDAKTDATYVDP FT VYGMTQRAFGQTSVTQSLLNKFASTRQMEGTPIETKIARTKIVLTKVMSGGTILYTESL FT SDVLSNVEQRAAIAFQRTHVQHKKLVALATIGVPENTGCALMMCYNSGIRGKAVVDAYT FT ASAEASVIWNPACQRQARLEINVNPCKSAWSYQYLRQSKGVFNVVCISGWTTTPSTDLS FT LTIDWYLSEEDAVPETYCAMGMNPKIVLNRWMGKLSFPQGTDVTLRRMPLAIGGGAGGT FT GLVYMNMPNALCSLWRYMRGGMSFEIIKMSSPYIKATIAFFIAFTDVDATVPNLEAYPH FT KLVQFAEIQDRVTISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVIHDSVGSTIPGDF FT NIGVVLKEMTEVESIGRHPGWKGAKPLTVSPQGLRKSSSGVWNELFMVRGPPEAKSTDV FT VQFAIDLVGVGIATKNPGTWSVETNNSPMNNLLRTATWKSGTFHFQVLMEGNPLIKRGD FT WSSYCEVSLTQSTKVSTMASRNWVMKDPSSWELEFDIKIEGPNDGFENWESHFSNQTSW FT FLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPESANSRHSFLSTVDFDYGTV FT PRRRVPSVPPDGDGDDENRSERIRALDRHRERDGQNRDRLATYMRRT" FT mat_peptide 914..1798 FT /product="movement protein" FT /note="MP" FT mat_peptide 1799..2923 FT /product="large coat protein" FT /note="CP-L" FT mat_peptide 2924..3676 FT /product="small coat protein" FT /note="CP-S" XX SQ Sequence 3960 BP; 1177 A; 719 C; 931 G; 1133 T; 0 other; tattaaaatt ttataaagat cttaataaac cgcaatcagg actgagtccg ccccgttact 60 ttgttactat aaaaagcaat caggcctgag cgccgccccg ttacttttgt tactataaaa 120 gcaatcaggc ctgagcgccg ctggttacaa ttcgtgcagt tcacacaggg atatttgcaa 180 gttacttgaa aaaattttct gtgctgaact ctgtttacaa attaaaccta ttcgaaggta 240 ggtgctggtt tttcaaccgg tcagactacc aagcaaacaa gtctttcgta gatttgttgt 300 attgctgtgc ctcaatcgag aatatcagat attacgcaaa tttcttttgt tgttacgcgt 360 ggaaatgctc cattaaaatc aatttccacg aatgaacaac gtgaagggat accgcaattg 420 tacttattgc ttaacaccag gttattacaa ggaacaggcc aaagattttt catacgcccc 480 gcaggagaag tacgtcaagt ttcttaaagt ttcccctttt tcttttgtgt gttttattac 540 tttttgtcat ataataacgt acttagaagt tttatttaac gtgtgttttg ggtttaatag 600 ttgggctaca gagaccatcc gtagttggat gctagatata gatagcaagg ccaataaagc 660 ttatacacgt ctgtattcga ttagagagtg gtcttcaggt cgccaagtta ctgtacaaca 720 ctcctacttt actgcaaaaa tggagacggt tatggaacgt ggtattgccg ccaaagctct 780 ggaacttcga aatgatgctg ccttgaacaa gggaaggcac ttcactggac ttaaagatca 840 catacccgct ggaaaagact tgtatgtgta caagcagaag ttgtttgaaa tgctaaaggg 900 tagtaaaagg agtcgtgagg ttgacattag ccgcatcaaa ggttgtgagg ttgttgagat 960 gaaacatata gacgtcggca cattgtcccc tggagagaat cagattatca atgtcaaaat 1020 tgttaaggat gaaatgttgc cacaacctga gcagagtgat tatgccttag tgtcacattc 1080 caacgagtct aaatatgcca atgccatgca cgttggagcc atagaagtca tttttaacag 1140 ctatgcatca ccgtcaagtg atattgtcgg aggaatgata ttggtggata cctgccataa 1200 gagtgttgct aatgctgtaa gaagtgtctt tgtcactgga ctagcaggag gcaagctcat 1260 aagggtgctc atgtatccca atacgcttgt tgaaataggc cctagaatga atgatagatt 1320 caaactggtg tgcactacat caaatagcga tatcagtgaa ggattcaatc tggcttctgt 1380 taaggtcaac gtcgttggtt gtacccaaag tttgatgaca caatatgttc cccaaccatt 1440 gttggacaat ctgctgaata aagagcaagg aactgttgtt gaatatttgg gccagctctc 1500 atacgtcatg catcattcca atcatataac cgaagagttt ttggcaaatc aaaccatgga 1560 atttgatctt ggaaagaagt tgcaactcat tcccagcagt tctggagcaa gccttgctca 1620 aagcgcatca atgcgttatg tagttgggcc taaacagaga ttgcacagtg cggagagtga 1680 tgttgaaatt tcaggttttg ataagcgcaa gaacaatgca cgcagaagtg tcgatgctaa 1740 aactgatgcg acgtatgtgg atcctgtcta tggtatgacg caacgggctt ttggacaaac 1800 aagtgtcaca caatcgttgc tgaacaaatt cgcaagcaca aggcagatgg aaggaacacc 1860 aattgaaacg aaaattgcca gaaccaaaat agttttgacc aaggttatgt ctggtggaac 1920 cattctatac acagagagct tgagtgatgt gctctccaat gtggaacagc gtgccgctat 1980 tgcgtttcaa agaacacatg tgcagcacaa gaagttggtt gcgctggcta caattggagt 2040 gccagagaat acaggctgtg ccctgatgat gtgttacaac agtggcataa ggggaaaggc 2100 agtggttgat gcttatacgg cttcagctga ggctagtgtg atatggaacc ccgcgtgtca 2160 gcgacaagct cgcttggaaa taaacgtcaa tccgtgcaaa agtgcttgga gttaccaata 2220 tctgcgtcaa tcgaaagggg tgtttaatgt agtctgtatt tcaggctgga ccacaacacc 2280 ctcaacagat ctgtctctga caatagattg gtatctgagt gaagaagatg cagttccaga 2340 aacatattgt gccatgggca tgaatcccaa aatagtgctg aatcgatgga tgggcaaact 2400 ttcctttcca caaggaacag atgttacatt gagaagaatg ccacttgcca taggaggagg 2460 tgctggtgga acaggactgg tatacatgaa tatgccaaac gcactgtgtt cattgtggcg 2520 atacatgcgt ggaggaatgt ccttcgaaat tataaagatg agctcgccct acattaaggc 2580 taccatagcc ttttttatag ctttcacgga tgttgatgca acagtgccaa atttggaggc 2640 atacccccat aagttagttc aatttgcaga aatacaggac agggtcacga tatcttttga 2700 caaggaagac tttgtaatgg cttggtccac ccaagttcat aatagtgttc ctctatctga 2760 agatggttgc ccctatttgt atgctgtaat acatgatagt gttggatcga caataccagg 2820 agattttaac ataggggttg tgcttaagga aatgaccgaa gtggaatcca ttggaagaca 2880 tcctgggtgg aagggagcta aaccacttac tgtgagccca caaggacttc gtaagagttc 2940 ctcaggtgta tggaatgaat tatttatggt gagaggacct cctgaggcga aatcaacaga 3000 tgtggtacaa ttcgcaattg acctagttgg agttggtata gcgacaaaaa atccaggaac 3060 ttggtctgtg gagacgaaca atagtcctat gaataacctt ctaaggacag caacctggaa 3120 gagtgggacg tttcactttc aagtgttaat ggaaggaaat cctcttatca agagaggaga 3180 ttggtcttca tattgtgaag tttcactgac gcagagtacc aaggtttcta caatggcaag 3240 caggaactgg gtcatgaaag atccctcatc atgggaacta gagtttgaca tcaagataga 3300 aggtcctaat gatggatttg aaaactggga gtcacatttt agtaaccaga caagttggtt 3360 cttggttttc tctgtcttta atccagatca gtcgacagtt ttcgtggtca atggtatgat 3420 agatgatgat tgctggtttg ctggcaatac gctgatgcca ccatttcttg aaccagagag 3480 cgccaacagt agacattcct ttctatccac cgttgatttt gattatggaa cagtgccaag 3540 gagaagagtg ccatcggtac cgcctgatgg tgatggtgat gatgagaata gatctgaaag 3600 aatccgagca cttgatagac acagggagag agatgggcaa aatcgagatc gccttgcgac 3660 atatatgcga cgtacctaga tatagtttgt tgtttacatt atttaatgtg agttatgttg 3720 tagaatttgt atttctcttc ttttaatatg tatttacaat atatgtgtga aattagtaga 3780 tgtaaatctg ctttgtacgt ttgacagtct gtggaaacgt actggttcat ggtaatagga 3840 ccacctagga ggtaggactc tgggttttat tattccgata tttagatgtg taatatacaa 3900 tatatacatg atttagtagt aataaatttc tgtatgataa atattattac ttttttatta 3960 //