ID GU968732; SV 1; linear; genomic RNA; STD; VRL; 6076 BP. XX AC GU968732; XX DT 31-MAR-2011 (Rel. 108, Created) DT 31-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Turnip ringspot virus isolate CV-3 segment RNA1, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-6076 RA Chen Y.-K., Chang Y.-S.; RT "Occurrence of Turnip ringspot virus in Taiwan"; RL Unpublished. XX RN [2] RP 1-6076 RA Chen Y.-K., Chang Y.-S.; RT ; RL Submitted (04-MAR-2010) to the INSDC. RL Plant Pathology, National Chung Hsing University, No. 250 Kuo-Kuang Road, RL Taichung 40227, Taiwan XX DR MD5; bdf4262260a44bb35b7a5c7bf9ecfe58. XX FH Key Location/Qualifiers FH FT source 1..6076 FT /organism="Turnip ringspot virus" FT /segment="RNA1" FT /host="Brassica campestris" FT /strain="TW" FT /isolate="CV-3" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collection_date="Dec-2007" FT /db_xref="taxon:392504" FT CDS 312..5894 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:F2VQ14" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:F2VQ14" FT /protein_id="ADZ54704.1" FT /translation="MACLTLHKEQSSYALIPHFTSSDVRWLLRCYTRVNTFLPEFPVTN FT RLERLRDKHFDLLCLGYGAYLTHRNAMAVEPLEICHADFIFEDFHQFLCEKVSGNGGIS FT HFRTYINVCFGTYFGELIEFSAFVMDESEDQDFDLQGLRDCISSVASYIPLHVSVAVEW FT TTDKIIDGIKKRFQAVVAEWCPMAMQACSWLANIWDKVKEWVEEAIKTMTWFLEGAREL FT FYYGVSILTASCAIGIVEKILVATGMIGANCGLVQAFLSSAVLTGGLLSFTKKGQFKDA FT TTMVSLVSVLAGVIASTISALFGAPAVVTFQGPVELLEGAATALGVFGDTTLLSMGKTC FT QAINQINACAGNLKAIVGKIFTMLQDFIWKIFGMESRFLRDASLMFEEDVDQWLKDIAE FT CEDTYLEKAYASQDDIMRMQCLKKKGHDMRSKVLKVTSKISPVLASTVTRGVEAIEKLL FT RASLCQGIRASRKIPFVVYAYGASRTGKTLVVEKLISDFQEHFGLGKITVYSRNPIDQY FT WSGYRRQPIVNIDDFGAVACEPSMEAQMIPLVSSSPMPLTMAAVEEKGLMFDSKFIFCS FT SNLLEASPESKVHDNQAFRNRRHVLIHVTLDDEKEYDMHDFTANQRYKILKYDKGTYVV FT QNEFSSYGDLLTFCLTKWEEHEAEQVANLDKKLEEPTLVGDFRSFEVMFSSMILRSVEG FT KLTEHKDEATGKAFYEFVCFRRKDKLWNFTVDSRGKANMWCSKPESDELSEKELESQDI FT LRRCYEMLRFNDDTNLIIKMHLKDLAREDFYDDKMRFIGKFGNEHIQAQMQPVLDNMLD FT WHKIVLCGMGALQDRKAPVKWYDGLVDKIKDAMYTVYSKEISEWPLGLKIVVGVLISSL FT MGSGLWSLMSVLQGAGSTAALGVAAATGFSKYSAEDIAVAQSRKPNRYDVAQYKYRNVP FT ITKRAWAQGVMPLEHATAMIFDKIKASMQYGRTEVQIAIVPGRRFIGYTHFFQKITTPL FT RVRINTATGSRLLFYKPENMKYFEDSELCVYEDNTLEDLPSTSWDLFCWDFEKVQQTSF FT KALFLSCKRKAATGLPNPEWADIDVRTKTESLMINEGDYARVIPKFLEYVAPTVNHDCG FT SLVVAEIEGTYKVVGIHVAGSGGTKGYACFLPPLVKKAQAQHAQQYFDFLAFEEREGDG FT IAKIATLKKGIHIPVPTKTSLVETPVEWHLDTPCDKYPSILSSDDPRLEVSGVTDYDPF FT KAGILKYQDPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIKGLEYME FT RIPMATSEGFPHILTRSHGEKGKIRFVEGDGEDLTLIPNTSVTEALNVMEEHLEHEVPT FT LIGIECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMRRRDMLPCQV FT GINPYGMEWTDLAARLKSKGNNILCCDYSSFDGLLSKQVMAAMAGMINSFCGGDTSIKK FT KRENLLMACCSRYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKV FT PSLIPTSFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVIITDGKDKTSPY FT LLFRKLEECDFLKRGFKKDKSGIFWNSPEEKESLWAQLHYINATNLEQHEAYKTNLVNV FT LRELYMWDIDECSALRKKALHRVNWLLPSDLPTVAQIEEWYASCRGRYVPDSADSINFL FT LDQEHLGPLLAPQGVQRGVRLTDQVRTANLAHENHATRKPGELWILCQTLYPHGMLPDG FT VKAINWPLGNGRGGLPTTAWVDENIKRPTSELRKMISAALKRGDQIVFATRDNILPCNI FT LALLFLVIEGNITVETSNMVITSVIQQCKTLGYLVKECDFAFFNT" FT mat_peptide 312..1247 FT /product="protease cofactor" FT /note="Pro-Co" FT mat_peptide 1248..3029 FT /product="helicase" FT /note="Hel" FT mat_peptide 3048..3125 FT /product="virus protein genome-linked" FT /note="VPg" FT mat_peptide 3126..3755 FT /product="protease" FT /note="Pro" FT mat_peptide 3756..3896 FT /product="polymerase" FT /note="RdRp" XX SQ Sequence 6076 BP; 1762 A; 1083 C; 1475 G; 1756 T; 0 other; tattaaaatt ttgataaacc gcaatcagga ctgagttccg cccgttactt tgaagttgca 60 aatctgtttc ttaaacacat tgtttcaaga tttcacaatt tgtcctcttt catgatattg 120 acgtgtggaa acgtttgttg aagataggtg ctggtttttt caaccggtca gactatcatt 180 ggatactgtt tactttctaa gcgtacttca tcttttgctg tgcctttaat tttaaattga 240 agaatatcag aaattagtgt atactctttg ttgttgtgtg agtgctgcaa gctttgcttt 300 attaaaataa tatggcttgt ttaactttac ataaagagca aagcagttat gctttgatac 360 ctcattttac gagcagtgac gtaaggtggt tgttgcgttg ttatacacgc gtcaacactt 420 ttctccctga gtttccagtc acgaacagat tagaacgatt gcgagataag cactttgact 480 tactctgttt agggtatggt gcttatttga cacatcgcaa tgctatggca gtggaaccat 540 tggaaatatg tcatgctgat tttatatttg aagattttca tcagtttttg tgtgaaaaag 600 tatctggcaa tgggggaatc tctcatttca gaacttatat aaatgtttgt tttggtacgt 660 attttggaga gttaatagag tttagtgcgt ttgtgatgga tgaaagcgaa gatcaggatt 720 ttgatctaca gggcttgcgt gattgtatca gcagtgtggc ttcttacata ccacttcacg 780 tttcagttgc tgttgaatgg acgactgaca agattattga tggaataaag aaaagattcc 840 aagctgttgt agcagaatgg tgcccgatgg caatgcaggc atgttcatgg ctggctaaca 900 tttgggataa ggtcaaagag tgggttgagg aagccataaa gacgatgacc tggtttcttg 960 aaggagctag ggaacttttc tattatggtg tttccattct tacagcaagt tgtgccatag 1020 gcattgttga aaagatattg gtagcaactg gcatgattgg agcaaactgt ggattggttc 1080 aggctttctt atcgagtgct gtacttacag gaggattgtt gtcgttcaca aagaaaggcc 1140 aatttaagga tgccacaaca atggtctctt tagtttcagt attggcagga gtaattgctt 1200 caactatatc agctcttttc ggagcgccag cagtggtgac ttttcaaggg cctgttgaat 1260 tattggaagg ggctgctact gcgttaggtg tttttggtga taccactctc ctttctatgg 1320 gaaagacatg ccaagcgatt aatcagataa atgcatgtgc aggcaatttg aaagcgatcg 1380 tgggaaaaat tttcacaatg cttcaggatt ttatttggaa gatatttggg atggaatccc 1440 gattcctgag agatgcctct ttgatgtttg aggaagatgt tgatcaatgg ctcaaggaca 1500 ttgctgaatg tgaagacaca tatcttgaga aggcgtatgc ctcacaagac gatattatgc 1560 ggatgcagtg tcttaaaaag aagggtcatg acatgcgttc caaggttctc aaagtcacga 1620 gcaaaatttc acctgtgctt gcaagcacag tcacacgagg cgttgaagcc attgagaaat 1680 tattaagagc aagcttgtgc caaggaatac gagcttcccg gaagattccc ttcgttgttt 1740 atgcttatgg agcttctaga actggaaaaa ctctggtagt tgaaaaactg atttcggatt 1800 tccaggaaca ttttggcttg ggaaagatca ctgtatatag tagaaatcct attgatcagt 1860 actggagtgg ttatcgcaga cagccaattg tgaacattga tgatttcgga gctgtggcat 1920 gtgagccttc catggaagca caaatgatac ctctggtttc cagttctcca atgcctctga 1980 caatggcagc agtggaagaa aaaggactta tgtttgattc caaattcatc ttctgctcat 2040 ccaacttgtt agaagcaagt ccagaaagca aggtgcatga taatcaggct tttagaaaca 2100 gaagacatgt tctcatacac gtaactcttg acgatgagaa agaatatgac atgcatgatt 2160 ttactgcaaa ccagagatac aaaattctca agtatgacaa aggaacatat gtggtgcaga 2220 atgaattctc ttcttacggg gatctgttga cattttgtct caccaagtgg gaagagcatg 2280 aagcagaaca ggttgccaac ttggacaaga agctggagga gcccacatta gttggtgatt 2340 tcagaagttt tgaggttatg ttctcgagca tgatacttag gagtgttgaa ggcaagctta 2400 ccgagcacaa ggatgaggca acagggaagg cattttatga gttcgtctgt ttccgccgca 2460 aagataagct atggaatttc acagtggatt cacgtggaaa agcaaacatg tggtgttcta 2520 agcctgaaag tgatgagctt tccgaaaaag agcttgagtc acaggatatt ttgcgtcgat 2580 gctatgaaat gctgcgattt aacgatgaca ccaacttgat aattaaaatg caccttaagg 2640 acctcgcaag agaagacttt tacgatgata agatgcgttt tataggcaag tttggaaatg 2700 aacatattca ggctcagatg caaccagtat tggacaatat gttggattgg cataagattg 2760 tgctgtgtgg catgggagca ttgcaagaca gaaaagcacc cgtcaaatgg tatgatggtc 2820 ttgttgacaa gattaaggat gctatgtaca ccgtctacag caaagaaata tcggaatggc 2880 ctttgggtct caaaatcgtt gtgggagtgc tcatttcttc acttatgggt tccggcctgt 2940 ggagtttgat gagtgttcta caaggagcgg gcagtacagc agctcttgga gttgctgcgg 3000 caacaggctt tagtaagtat agtgcagaag atattgcagt tgcccagagt cgcaagccaa 3060 accggtacga tgttgctcag tataagtaca gaaatgttcc catcactaag cgtgcctggg 3120 ctcagggggt catgcctctt gaacatgcta cagcaatgat atttgacaaa atcaaagcaa 3180 gcatgcagta cggacgaaca gaagtgcaga ttgcaatagt gcctgggaga cgattcattg 3240 gatacaccca ttttttccag aagatcacca caccactacg tgttaggata aacacggcaa 3300 caggttctag acttcttttc tacaagccag aaaacatgaa atactttgaa gatagtgagc 3360 tgtgtgtgta cgaagacaac acactggaag atctgccaag tacaagctgg gatttgttct 3420 gttgggattt tgaaaaagtg cagcaaacat ctttcaaagc tctcttcttg tcgtgcaaga 3480 gaaaggcagc cactggtttg ccaaaccctg agtgggctga cattgatgtt cgaaccaaga 3540 cggagtccct tatgattaac gaaggtgact atgctcgtgt gatacccaaa tttctagagt 3600 acgttgcacc cactgttaat catgattgtg gatctttggt ggttgctgag attgagggaa 3660 cttataaagt tgttggaata cacgttgctg gctcaggggg aacgaaaggc tatgcgtgct 3720 ttttgccacc ccttgttaaa aaagcacagg ctcaacatgc acaacaatac tttgactttc 3780 ttgcttttga ggaaagagag ggagatggca ttgccaagat tgcgactttg aagaagggta 3840 ttcacatccc tgttccgacc aagacgtctc tagttgaaac acctgtggag tggcatttgg 3900 ataccccttg tgacaaatac cccagtattc tgtccagtga tgatcctcga cttgaggttt 3960 ccggtgtcac agattatgat ccttttaagg caggaattct caaataccag gatcccatgg 4020 gagagttgga tcaagatttg cttcaggagg tctgtgatga aatagaggaa acttggagag 4080 actgccagga ggagtttgaa acattcgagg aagtaagtct tgaagaggcc attaatggaa 4140 ttaaaggatt agagtacatg gaaagaattc caatggcgac gtctgagggt tttccacaca 4200 tcttaacccg gtcacatggt gagaaaggaa agataaggtt tgttgaaggt gatggtgagg 4260 acttaactct gataccgaac acaagtgtga cagaagccct gaatgttatg gaagaacatt 4320 tggaacatga ggtgccaacg ctaataggga tagagtgtcc gaaagacgaa aaacttccgt 4380 acagaaagat tttcgagaaa ccaaagacac gatgcttctc catattgcca atggaataca 4440 atcttctggt tcggcgtcga tttctcaaat ttgtcagatt catcatgaga aggagagaca 4500 tgttaccgtg tcaagttggt ataaacccat acgggatgga atggaccgat ttagctgcac 4560 gtttgaagag taaaggcaat aacatactgt gttgtgacta tagcagtttc gacggtttgt 4620 tgtccaagca agtcatggca gcgatggctg gtatgataaa ctccttttgt ggtggagata 4680 cgagcatcaa gaagaaacga gaaaatttgt tgatggcatg ttgttctcgc tatgctattt 4740 gcaagtctac tgtgtggcgt gttgaatgtg ggataccgtc tggatttcca ctgactgtga 4800 tatgtaactc catattcaac gagattctca ttcgttacag ctttaaggcc ataatgcgtg 4860 agcagaaagt cccaagtctc attccaacaa gctttgacaa gtatgttgga atggtcacat 4920 atggggatga caacttgctt tccgttagtg aggttgttaa gccctatttt gatgggaaac 4980 gcttaaaaga atttctggcc aaacacaaag tcataataac ggatgggaaa gacaaaacca 5040 gcccttacct acttttccga aagctagaag agtgtgactt cttgaaacga ggcttcaaaa 5100 aggacaaaag tggaatcttt tggaattctc cagaagagaa agagagtttg tgggcacagt 5160 tacactacat caatgcaacc aatttggaac aacacgaggc ttacaagaca aatctggtca 5220 atgtgttacg tgaattgtat atgtgggata ttgatgaatg ctctgctctt aggaagaagg 5280 ctctacaccg agtgaattgg ttgctaccat cagacttacc cacggttgct caaatagaag 5340 agtggtatgc ctcatgccgg ggaagatatg tgcctgattc agcagattcc atcaatttcc 5400 tcttagacca ggaacaccta gggcctttgt tggcaccaca gggagtgcaa agaggagttc 5460 gtcttactga tcaggttcgc actgcaaatt tggctcacga aaatcacgct acaagaaagc 5520 caggagagtt gtggatattg tgccaaacac tgtatcctca tggtatgctt cccgatggag 5580 tcaaggcaat caactggcct cttggcaatg gtagaggagg tttgcccacc acagcttggg 5640 tggatgaaaa tattaagcgc cctacttcag aactcaggaa aatgataagc gcagcgctta 5700 agagagggga tcagattgtg ttcgcaacac gtgacaatat tttaccatgt aacatactgg 5760 cactcctatt tctggttatt gagggcaaca tcacagttga aacaagcaac atggttatca 5820 catcagtcat tcagcagtgt aaaactctag gatatttggt taaagagtgt gattttgctt 5880 tctttaatac ataaaattag ttttacatct gctttgtgtg tttgacagtc tgtggaaaca 5940 cactggttca tgaggcagga ccacctagga ggtaggactc tgggtttagt tgtctctttt 6000 gttgtataac tatattgtga tatataattt tgtggtaatt aatttcttag ttgatatata 6060 ttactacttt tttatt 6076 //