ID GU951759; SV 1; circular; genomic DNA; STD; VRL; 2776 BP. XX AC GU951759; XX DT 27-APR-2010 (Rel. 104, Created) DT 28-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato yellow leaf curl Sardinia virus isolate TYLCSV-Sar-[IT:Sic:04], DE complete genome. XX KW . XX OS Tomato yellow leaf curl Sardinia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2776 RX DOI; 10.1007/s00705-010-0762-5. RX PUBMED; 20665057. RA Davino S., Miozzi L., Accotto G.P.; RT "The complete nucleotide sequence of an isolate of Tomato yellow leaf curl RT Sardinia virus found in Sicily"; RL Arch. Virol. 155(9):1539-1542(2010). XX RN [2] RP 1-2776 RA Davino S., Miozzi L., Accotto G.P.; RT ; RL Submitted (02-MAR-2010) to the INSDC. RL Istituto di Virologia Vegetale, Consiglio Nazionale delle Ricerche, Strada RL delle Cacce 73, Torino 10135, Italy XX DR MD5; da50159cf9a107b9f83189270813e34b. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2776 FT /organism="Tomato yellow leaf curl Sardinia virus" FT /host="Solanum lycopersicum cv. Schieren" FT /isolate="TYLCSV-Sar-[IT:Sic:04]" FT /mol_type="genomic DNA" FT /country="Italy:Sicily" FT /collection_date="2004" FT /db_xref="taxon:123735" FT stem_loop join(2764..2776,1..20) FT /function="circularization of ss-DNA during replication" FT /note="part of replication origin; hairpin loop" FT misc_feature 1..9 FT /note="part of replication origin; conserved FT nonanucleotide; target of Rep protein" FT regulatory 111..116 FT /regulatory_class="TATA_box" FT gene 148..495 FT /gene="V2" FT CDS 148..495 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:Q776X7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q776X7" FT /protein_id="ADF43036.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 308..1081 FT /gene="V1" FT CDS 308..1081 FT /codon_start=1 FT /gene="V1" FT /product="CP protein" FT /note="coat protein" FT /db_xref="GOA:D5LNI2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D5LNI2" FT /protein_id="ADF43037.1" FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT regulatory complement(1053..1057) FT /regulatory_class="polyA_signal_sequence" FT gene complement(1078..1482) FT /gene="C3" FT CDS complement(1078..1482) FT /codon_start=1 FT /gene="C3" FT /product="REn protein" FT /note="replication-enhancer protein" FT /db_xref="GOA:D5LNI3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D5LNI3" FT /protein_id="ADF43038.1" FT /translation="MDLRTGEYITAHQATSGVYTFGITNPLYFKITRHNQNPFNNKYNT FT LIFQIRFNHNLRKELGIHKCFLNFRIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNN FT VIRAVDYVLYDVFEGTIDVTENHEIKFNLY" FT regulatory 1080..1085 FT /regulatory_class="polyA_signal_sequence" FT gene complement(1223..1630) FT /gene="C2" FT CDS complement(1223..1630) FT /codon_start=1 FT /gene="C2" FT /product="TrAP protein" FT /note="transcriptional activator protein" FT /db_xref="GOA:D5LNI4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D5LNI4" FT /protein_id="ADF43039.1" FT /translation="MRSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFQDNQTQSEPIQQQVQHTNIPNQIQPQ FT LEEGTGDSQMFSQLPHLDDFTVSDWSFFKSI" FT gene complement(1539..2618) FT /gene="C1" FT CDS complement(1539..2618) FT /codon_start=1 FT /gene="C1" FT /product="Rep protein" FT /note="replication-associated protein" FT /db_xref="GOA:D5LNI5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D5LNI5" FT /protein_id="ADF43040.1" FT /translation="MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIK FT ICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSEALDVIKELAPRDYVLHFH FT NINSNLDRVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKHQALKNWAIKNAIFVTIHQPL FT FTDTHQNTTPHRQEEAGEA" FT gene complement(2171..2467) FT /gene="C4" FT CDS complement(2171..2467) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D5LNI6" FT /protein_id="ADF43041.1" FT /translation="MKMGNLISMFSSSSKANTIVPINDSSTWYPQPGQHISIRTFRELN FT RAPTSSPTSTRTEMFLSGVLSRSTDDLLEEDNRQPTTLTQRQLTQEVSRRLLM" FT regulatory complement(2684..2689) FT /regulatory_class="TATA_box" XX SQ Sequence 2776 BP; 763 A; 529 C; 600 G; 884 T; 0 other; taatattacc ggatggccgc gctccctgat aaagaagtgg gtcctacgca gtaatttctg 60 tcgaccaatg aaattccagc ctcaaagctt aaataattgt ttagctttct tataaacttg 120 ctcactaagt tttaaaaata ccacaaaatg tgggatccat tattaaatga atttcctgat 180 tctgtccatg gtctccgatg catgctcgca attaaatatt tgcagctagt tgaagaaacc 240 tacgaaccaa atacccttgg tcacgaccta attagggatc tcatctccgt cattcgtgct 300 cgtgactatg ccgaagcgaa ccggcgatat actaatttca acgcccgtct cgaaggttcg 360 tcgaagactg aacttcgaca gcccgtatac cagccgtgct gctgccccca ctgtccaagg 420 catcaagcgt cgatcatgga cttacaggcc catgtatcga aagccgcgga tgtacagaat 480 gtacagaagc cctgatgtac ctccgggttg tgaaggtccc tgtaaagttc agtcctatga 540 gcagcgtgat gacgtaaagc ataccggtgt tgtgcgttgt gttagtgatg ttactagggg 600 ttctggtatt actcatagag ttggtaaacg tttttgtatt aagtcaattt atattttagg 660 gaagatttgg atggatgaaa atataaaaaa acaaaatcat actaaccagg ttatgttttt 720 ccttgttcga gaccgacggc cttatggaac tagtcctatg gattttggtc aagtttttaa 780 catgtttgat aatgaaccca gtactgctac ggtgaagaac gacttaaggg ataggtatca 840 agtaatgagg aagtttcatg ctacggttgt tggaggtccg tcagggatga aggagcagtg 900 tttgctgaag agatttttta aaattaatac ccatgtagtt tataatcatc aagagcaggc 960 gaagtatgag aatcatactg agaatgcctt gttattgtat atggcttgta ctcatgcttc 1020 taacccagtg tacgctacat tgaaaatacg tatttatttt tatgatgctg taacaaatta 1080 ataaagatta aattttattt catgattttc agttacatca attgttcctt caaatacatc 1140 atacaataca taatcaactg ctctaataac attattcaaa gaaattacac ccaaattatt 1200 caaatattta caaacttgat atttaaatac tcttaaaaaa tgaccagtcg gagactgtaa 1260 agtcgtccaa atgcggaagt tgagaaaaca tttgtgaatc cccagttcct tcctcaagtt 1320 gtggttgaat ctgatttgga atattagtgt gttgtacttg ttgttgaatg ggttctgatt 1380 gtgtctggtt atcttgaaat ataggggatt tgttatcccg aaggtataaa cgccactcgt 1440 tgcttgatgc gcagtgatgt actcccctgt gcgtaaatcc atgatttatg cagtctaagt 1500 gtatgtaata tgagcatcca cagtccagat cgacccttct acgcctcacc tgcctcttct 1560 tggcgatgtg gtgttgtatt ttgatgggta tctgtgaaca atggctggtg gatggtgacg 1620 aagatcgcat tcttaatagc ccaatttttt aatgcttggt gtttttcttc gtcaagatat 1680 tctttaaatg atgattgtgg gcctggattg cagaggaaga tagtgggaat gcctccttta 1740 atttgaatgg gcttcccata cttggtgttg ctctgccagt ctctttgggc ccccataaac 1800 tctttaaagt gctttaaata atgcgggtcg acgtcatcaa tgacgttata ccaagcatta 1860 ttgctgtata ctttttgact gaggtcaaga tgaccgcaca aataattatg tgggcctaag 1920 gaacgggccc acattgtctt tcctgtccgg ctgtcaccct caatcactat actcaccggt 1980 ctccaaggcc gcgcagcggc atccatgacg ttctcggaaa cccagtgttc aagttcatca 2040 ggaacttgat cgaaagaaga agataaaaaa ggagaaacat aaggtgccgg aggcacctgg 2100 aaaaccctat ctaaattact atttatatta tgaaaatgta aaacgtaatc tctaggcgct 2160 aattctttaa ttacatcaag agcctccgac ttacttcctg cgttaattgc ctttgcgtaa 2220 gcgtcgttgg ctgtctgttg tcctcctcta gcagatcgtc cgtcgatctg gaaagtaccc 2280 cactcaagaa catctccgtc cttgtcgatg taggacttga cgtcggagct cgatttagct 2340 ccctgaatgt tcggatggaa atgtgttgac ctggttgggg ataccaggtc gaagaatcgt 2400 tgattggtac aattgtattt gccttcgaac tggatgagaa catggagatg aggttcccca 2460 ttttcatgta attctctgca aattttgatg aacaatttgt ttgtgggtgt ttgtaggttt 2520 gttatttgtg aaagtgcatt ttcttttgtt aaatcacatt tgggatatgt aaggaaatag 2580 tttttagctt tgatactaaa acgacctgat cttggcattt tggctgtcgt tctgaatcgg 2640 gggacactca aagtatccag caattggggg aattgggggg caatatatat gatgccccct 2700 aaatggcata gatgtaatta tttaaagtat atattttaat ttttaatttt ttttttggtg 2760 aaagcggcca tccgtc 2776 //