ID GU903012; SV 1; linear; genomic RNA; STD; VRL; 7568 BP. XX AC GU903012; XX DT 02-JUN-2010 (Rel. 105, Created) DT 02-JUN-2010 (Rel. 105, Last updated, Version 1) XX DE Grapevine virus E isolate SA94, complete genome. XX KW . XX OS Grapevine virus E OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7568 RX DOI; 10.1016/j.virol.2010.01.023. RX PUBMED; 20172578. RA Coetzee B., Freeborough M.J., Maree H.J., Celton J.M., Rees D.J., RA Burger J.T.; RT "Deep sequencing analysis of viruses infecting grapevines: Virome of a RT vineyard"; RL Virology 400(2):157-163(2010). XX RN [2] RC Publication Status: Available-Online prior to print RP 1-7568 RX DOI; 10.1007/s00705-010-0685-1. RX PUBMED; 20473697. RA Coetzee B., Maree H.J., Stephan D., Freeborough M.J., Burger J.T.; RT "The first complete nucleotide sequence of a grapevine virus E variant"; RL Arch. Virol. 155(8):1357-1360(2010). XX RN [3] RP 1-7568 RA Coetzee B., Maree H.J., Stephan D., Freeborough M.-J., Burger J.T.; RT ; RL Submitted (21-FEB-2010) to the INSDC. RL Department of Genetics, Stellenbosch University, Private Bag X1, Matieland RL 7602, South Africa XX DR MD5; ca4424694c9e11b75b7b0be74cbf9638. XX FH Key Location/Qualifiers FH FT source 1..7568 FT /organism="Grapevine virus E" FT /host="Vitis vinifera cv. Cabernet" FT /isolate="SA94" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="Jul-2009" FT /db_xref="taxon:516956" FT CDS 66..5165 FT /codon_start=1 FT /product="replicase" FT /note="contains methyl-transferase, helicase, RNA-dependant FT RNA polymerase and alkB domains" FT /db_xref="GOA:D7PQS3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:D7PQS3" FT /protein_id="ADH51680.1" FT /translation="MSLGASSQRVAYANLYANVGSDKLSEVRDRKAKAIDDIESYANNL FT FDYYVSDDVHDFLAAKGLPLSVNCFRAHSHPISKMIENHFIFNLIGNNLTKDSTFVSFK FT EEKLVVLKSKKSRLDGNMAIINRIIHAKDALRYKDPLRNIWFDEDPVSLKNLRDSTRVV FT IHDEVHYWGLYDFQKFLCLINCPLVYSIIYPAELHNGYTFSLYPDLYEFILSPDGKTFT FT WKPDGKASGSYRQPVNSWLLSTNKTMDLNGRTWTITKLESIGSHHLFLCTLGDLVTESE FT AIYDDYSLVDPRLFSNLEQRMPKLRASYMHKVIHYLMALKKPDAASAVSKLRQLARGDE FT TTDEMIFSGVVATQIAELKYFSEVGGLIDLSKFMKVGFARFFGQQVEYILNKKWYHLDS FT FTQMVKLMVKAEVVIKMGYKPVVGGNQNILVEPLVNGLSSRLKSAGLQALEDLAEPGVP FT ERSRSPYSFIYNDGERMCDAGDPVLELAEFKKMLGHPKNTFEQKWCFYPTKPADGSNFT FT YQEVAKNIYIRVYLIANPEPHVLLLEGLIDLEEYKRMVSAQPTRQTVVTMVEEVTQKPE FT EEEKFEQSMEKLREVRNNLCLIKPIADHFGLPVPVVISKATVEMPNFSRYLNEEGLSMP FT GLYMLCKNMNLTLSILADSGYLHVQGAYKPLGLRITGDHAVPYRYIKSKNDPSDALMVN FT PGVGSMEIEVSSTYAAKLQASFEKGFTGLKLNDFGGKWTNKKKLGRVENLTVSTCFGFA FT GSGKTSGITHMLKLGHGMEVVVVSPRRALSEEWKKELKDTDVKVFTFENYFLKHNHKAD FT LLILDEVPLLPPGYIDLVHFSKPVGHIMILGDPLQTSYHADSDAITLAEVEGDIFKRLH FT PISKGKCACGLTVVPCKFNGEVPKFDFSAADQLKGRKGLFYSKGGEGYKYNGGQHESRG FT WLDTLDTIVESCGYCANDFDHCLVQEYVAGGSIGAHSDDEPIYPLDNPILTVQLSGSST FT FTLSCKKGDTALELDGAQFFLMPNGCQRSHKHAVKAHEQRISLTFRSTRPLELMSVKEL FT GVPYLFLTNRLSAEQNILGVPSFGSGHFEVKEVKKLSKELLTLCFSRATVEEEQKNLDI FT CTVGQAQGLSRDVVQLYFDSGAMKCSDEVVITALTRARKGIHMFFKVSRNDLKKCASEF FT LREFIISGKIKEGNMLAKIEAKLGNCKFTRRNVHIGSGSAEIEEHLKGDPGLKAMLLIL FT EAEEMEPEFMQQEVVPETIRTHLALSTFHNEQFASELKAKENREHYLYGTGYSTQIRDD FT KDSEYHPGPSAPSSIYLHHTADDDVLFYLSIKKRLRFADYEKNARSFRLKEKLGQSIFS FT EFLKRADFMNFTYPPAVDDTQMALDFTMKRIQKSANILEAHSYRSDADWPSNYLKLFIK FT NQDCTKMEKRGSDAKAGQTIACFSHAVLCKFGPILRKTEAQLRAILPPHVLIFSQKNYD FT DLNTWSKRYFDDFSGTDSDYEAFDRSQDGAILSFEICLLKHFLWPEELIEEYKTLKLMM FT GCQLGDLAVMRFSGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNN FT TMSSILNQLELKAKVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKLDDCLAN FT YALEASYGYRLSEHLCELNIDLDAFQELIRKIVMLKGRLPKQIASLFDDSDDIISSDED FT LE" FT CDS 5172..5747 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D7PQS4" FT /protein_id="ADH51681.1" FT /translation="MQVRQLVRSKFDSLTLANKLNRLILEEVALEPELFNPLYFLENED FT QHTLLLNQLVWQLSISPDSEKLCVFRVQQIDRLACVAYDFDSSSIREIFLYSNFSQHNL FT GELYRFIGCEYLDSCYISELGGKCTLVTQSGNRVSIDVSLDHIVGIIRRLESLCVVIKP FT ASPKPINSPYMFHGKPSPYKNAPPLPFG" FT CDS 5768..6574 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B3Y538" FT /protein_id="ADH51682.1" FT /translation="MERAEIKAFTVKNRKNGLENFKEMRAVIDKGKVYDEELLDKLFGK FT STVLKSSVCSEVFVVNGKVCTEIELVAEGVTDGIEKEKTPFMHVGCIVIGFMSLARSSS FT GTYKVVIQDDRLKGENKNICAFKFSAQDKVAAFADFPDYCLAVEDLCSGFSIRVLIESE FT DTGFEDNAHPLAINIIGICKFLDDTLETKMIIKRHGKHMYQRICATEVLDPNIGTLQEN FT PTALIDDALMSDVRKAIEKANGVKSDPIRSHDRVRGKDPGIHSRTH" FT CDS 6495..7094 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D7PQS6" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:D7PQS6" FT /protein_id="ADH51683.1" FT /translation="MESKAIRSALMTVFAAKIPGFTAEPTNPEQVSMNNNILANLFGNI FT AIIGTSASVLSYPISVPCYNLESGRILGAETVGEPLKVAQLVMYMIAVRNSTVDPPLAN FT LTLRQMCTPFAPEAYLFLRTAASSKIYTQLARKMTRIGNKEPQVVFDFAKGLPLSSLTR FT SEASCIQVMHQRLFRTEGAKAVFDAQSQVGESSVEV" FT CDS 7112..7462 FT /codon_start=1 FT /product="putative nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:D7PQS7" FT /protein_id="ADH51684.1" FT /translation="MGSAYLGESRSAAKRRAVRYGRCYCCGRLECNGNVRTTISQDQVK FT QAIRTPATRFLTENEGNYKNAAINLALSDLVRMGKSEYPYKLKYNKAPMGMRSPEETPE FT FYFWNNSDFNAT" XX SQ Sequence 7568 BP; 2306 A; 1381 C; 1847 G; 2034 T; 0 other; gaaaatacgt acatagtttc cgccctttgg ctttatccta aacattcagt tcgtaaagat 60 caagaatgtc tctaggagcg agttcacaga gggtggctta tgccaacttg tacgcaaatg 120 taggtagtga caaattatct gaggtaagag atagaaaagc taaagcaatt gatgacattg 180 aatcatatgc taataatcta tttgattatt atgtatctga tgatgttcac gatttcttag 240 cagcaaaggg gttacccctt tccgttaatt gcttcagagc tcatagtcac cctatatcaa 300 aaatgataga aaaccatttt atttttaatt tgataggcaa taatttaact aaagatagta 360 cttttgttag ttttaaagag gaaaaattag ttgttttaaa atcaaagaag agtagattag 420 atggtaatat ggctattatt aatagaataa ttcacgcaaa ggacgcttta agatataagg 480 atccactcag aaacatatgg ttcgatgagg atccagtatc tttaaagaat ttgcgagata 540 gtactagagt agtaatacat gatgaggtac attattgggg tttgtatgat tttcaaaaat 600 tcttatgcct cattaattgc ccactagtgt atagtattat ttacccggct gagctccata 660 atggatatac tttctctctg tatccagatt tgtatgagtt cattttaagt ccagacggga 720 aaacattcac ttggaagcca gatgggaaag cttcaggatc atacaggcaa ccagtgaatt 780 cctggctctt gagcacaaac aagaccatgg atctgaatgg gaggacatgg accataacca 840 aattggaaag catagggtcc catcacctct ttttgtgcac gcttggagat cttgtgactg 900 aatctgaggc catatatgat gactattctt tggtggatcc tcgattattc agcaatcttg 960 aacaaagaat gccgaaattg agagcatcct acatgcataa ggttattcat tatttgatgg 1020 cgctcaagaa gcccgatgcc gcttcagctg tgagcaaact caggcaatta gctagagggg 1080 atgaaaccac tgatgaaatg atatttagcg gggtggttgc aacccagata gctgaattga 1140 aatacttcag cgaagttgga ggtttgatag acctgagcaa attcatgaaa gttgggtttg 1200 ccagattctt tggccaacag gttgagtata ttctgaacaa gaagtggtat catttggaca 1260 gttttactca aatggtaaaa ctgatggtta aagctgaagt ggtgataaag atgggttaca 1320 agccagtcgt ggggggcaat cagaatatac tagtggaacc actggttaat ggtttaagca 1380 gcagattaaa atcagctgga ttacaagctc tggaggatct ggccgaaccc ggtgttcctg 1440 aacgttcaag aagcccttac tctttcatct ataatgatgg ggaaaggatg tgtgatgcag 1500 gtgatccagt cttggaattg gctgaattca agaagatgct tgggcaccca aagaacactt 1560 ttgaacagaa atggtgtttc taccccacaa agccagccga tgggagcaac ttcacttatc 1620 aggaagtggc gaagaacata tatatccgtg tgtacctcat agctaaccca gaacctcatg 1680 ttctactttt agaagggttg atagatctag aggagtacaa acggatggtg tctgcacaac 1740 caactaggca gacagttgtg actatggtgg aagaggtaac tcagaaacct gaagaagaag 1800 aaaagtttga gcaaagcatg gagaaattga gagaggtgag gaacaatttg tgccttatca 1860 aaccaatagc tgatcacttt ggcttgcctg tgcccgtggt aataagcaaa gcaacagttg 1920 agatgccaaa cttctcaagg tacctcaatg aggaaggtct gagcatgccc ggcttataca 1980 tgctatgtaa gaacatgaat cttacactga gtatactggc tgattctggc tatctccatg 2040 tgcagggagc ttacaagcca ttagggctca gaataacagg tgatcacgcc gttccttaca 2100 ggtacataaa gtccaaaaat gatccttcag atgcattgat ggtgaatcct ggtgtgggtt 2160 caatggagat agaagtatca tccacctatg cagcaaagct acaagcatct ttcgaaaaag 2220 gatttacagg gttaaagctg aatgattttg ggggtaaatg gactaataag aagaagctcg 2280 gaagagttga gaatctgact gtgagcacat gttttggatt tgcgggctca ggtaaaacca 2340 gtggtattac tcatatgctc aagctcggcc atggaatgga ggttgtggtg gtaagcccac 2400 gaagagctct cagtgaagaa tggaagaaag agcttaagga tacggacgtg aaagttttca 2460 cgttcgagaa ttacttcctg aagcataatc ataaggcaga tctcttgata ctggatgaag 2520 taccactttt acccccgggg tacattgatc tggttcactt ttcaaaacca gtggggcata 2580 taatgatact tggggaccct ttgcaaacga gttaccatgc agatagtgat gccataactt 2640 tggcagaggt agagggtgac attttcaaaa ggttacatcc aatatctaag ggtaaatgcg 2700 cttgtgggtt aaccgtagta ccttgcaaat tcaatgggga ggtaccaaag tttgattttt 2760 cagcagccga tcaattgaaa gggagaaagg ggctcttcta tagtaaaggg ggtgaaggtt 2820 acaaatataa tgggggccaa catgaatcaa gaggatggct ggacactttg gatactatag 2880 ttgaatcttg cggctactgt gcaaatgatt tcgatcattg tttggtgcaa gaatatgtgg 2940 ctggaggatc aattggtgcc cattctgatg atgaacccat ttatccattg gacaacccaa 3000 tattaacagt gcaactgagc ggttcttcca ctttcacatt gagctgcaag aaaggtgata 3060 ctgcactaga gctggatggg gcacaattct ttttgatgcc aaatgggtgc caaagaagtc 3120 acaaacatgc agtgaaggca catgaacaaa gaatcagcct aaccttcagg agcactagac 3180 cattagagtt gatgtcagtg aaggaattag gtgtgccata cctcttttta acaaatcgtc 3240 tgtcagctga acaaaatatt ctgggtgtcc cttcattcgg ttctggccac tttgaagtga 3300 aagaggtgaa aaaactgagc aaagagcttt taacattgtg ctttagcagg gccacagtgg 3360 aggaggagca gaaaaatctt gatatatgca ccgttgggca ggctcaaggt ctgagcagag 3420 atgtggtcca actgtacttt gattctggag caatgaaatg ttcagatgag gtggtgatca 3480 cagccctgac aagagctagg aaagggatac acatgttctt caaggtgagc aggaatgatt 3540 tgaagaaatg tgcgtcagaa tttctcaggg aattcataat cagtggtaag atcaaggaag 3600 ggaacatgct ggcgaagatt gaggccaagt tggggaactg taagttcaca agaagaaatg 3660 tgcatatagg atcaggaagt gctgaaattg aggaacatct aaaaggggat cctggtctaa 3720 aagcaatgct cttgatacta gaggccgagg agatggagcc agagttcatg cagcaggagg 3780 tagtgcctga aaccatccgc actcatttgg ccctgagcac ctttcacaat gaacagttcg 3840 catctgaatt aaaagcaaag gagaacaggg agcattatct gtatggtacc ggttattcca 3900 cacaaattag ggatgacaag gattcagagt accacccagg tccatcagct ccaagttcaa 3960 tctatctcca tcatactgct gatgatgatg tgctcttcta tctgtcaatc aagaagcggt 4020 tgagatttgc ggactatgaa aagaatgcaa gatcgttcag gcttaaagaa aagctgggcc 4080 aatccatatt cagtgaattt ctgaagaggg cagatttcat gaacttcacc tacccaccag 4140 cagtggatga cactcagatg gctcttgatt tcacaatgaa gagaattcag aaaagtgcaa 4200 acatattgga ggctcatagc tataggtccg atgctgattg gccaagcaat tatctcaagc 4260 tgttcatcaa aaatcaagat tgcacaaaga tggagaaaag gggttctgat gcaaaggctg 4320 gccagaccat tgcctgcttc tcccatgcag ttttatgcaa attcgggcca attctgagaa 4380 aaactgaggc tcaattgagg gcgatcttgc caccacatgt gttgatattt tctcaaaaga 4440 attatgatga tctcaacacc tggagtaaga ggtacttcga tgactttagt ggcacagata 4500 gcgattatga agcttttgac agatcacaag atggtgctat cttatctttc gagatatgtc 4560 tgctgaagca ctttttgtgg cctgaagagc tcatagaaga gtacaagact ctgaaactga 4620 tgatgggctg tcaattgggc gatttggctg tgatgaggtt ctcgggggaa tttggcacat 4680 tcttctttaa cacaatgtgc aacatggcct tcacctactt gaggtatttc ataggaccga 4740 accaacccat agcatttgct ggggatgaca tggtggcacc aggccaactc atagtaaaca 4800 ataccatgag ctctattttg aaccaacttg agcttaaagc aaaggtgaat tacagtgatt 4860 cacctttatt ctgtggttgg agaatgagcc catatggtat tgttaaggac cctaatctat 4920 tactggatag gctggagatg aaaaaggctg aaggtaagct ggatgactgt ttggccaact 4980 atgcccttga ggcaagttac ggttacaggt taagcgaaca cctttgtgag ctgaacatag 5040 atcttgacgc cttccaggaa ttgattagga agatagtgat gctcaaggga agattgccga 5100 aacaaatagc atcactattc gatgattctg atgatataat aagctctgat gaggatttag 5160 aatagcagta gatgcaggta aggcagctag ttaggagtaa gtttgatagt ttaactttag 5220 ccaataaatt gaataggtta atactagagg aggtagcttt agagcctgaa ctgtttaacc 5280 cactgtactt cttagagaat gaggatcagc acaccttact gttaaaccaa ttggtttggc 5340 agttaagtat cagtcctgat tcagagaagt tatgtgtgtt tagggttcag cagatagata 5400 ggttagcctg tgtagcctat gatttcgata gtagcagcat tagagagatt ttcttgtata 5460 gtaattttag tcagcataat ctgggtgagc tctacaggtt tattggatgt gaatacctcg 5520 attcctgcta catttcagaa ttgggtggaa agtgcacatt ggtgacgcag tcaggaaata 5580 gggtgagcat tgatgtttca ctggatcata tagtggggat aatcaggaga ttggagtctc 5640 tgtgcgtggt tattaaacca gcctcgccaa agcctatcaa ttccccttat atgtttcacg 5700 gtaaaccatc accctacaag aatgcacctc ctttaccctt tggctaagct accgccacta 5760 aactgaaatg gagcgcgcag agatcaaagc attcacggtg aaaaaccgca agaatggtct 5820 cgagaatttt aaggagatgc gggctgtgat tgacaaaggg aaggtgtatg acgaagagct 5880 attggacaag cttttcggaa aatccaccgt cttaaaatca tctgtgtgta gcgaggtgtt 5940 tgtggtcaat ggcaaagttt gcactgagat agagcttgtg gctgagggtg tgacagatgg 6000 gatagaaaaa gagaaaacac cattcatgca tgtggggtgc atagtcatag gtttcatgag 6060 tctggcaaga tcttcatcag gcacatacaa ggtggtcata caggatgaca ggctcaaagg 6120 ggagaacaag aacatttgtg cattcaaatt ctctgctcag gataaagtag cagcatttgc 6180 tgatttcccc gactattgcc tcgccgttga agatctttgc tcaggtttct ccatcagggt 6240 gttgattgag agtgaggata ctgggttcga ggacaatgct caccctttgg ctataaatat 6300 cattggtata tgcaagttcc tagatgatac acttgagacc aagatgatca ttaaaaggca 6360 tgggaagcat atgtaccagc gtatatgtgc cactgaggtc ctagatccaa acatagggac 6420 tttgcaagag aatccaaccg cacttattga tgatgcactt atgtctgacg tgcggaaggc 6480 aattgagaaa gccaatggag tcaaaagcga tccgatccgc tctcatgacc gtgttcgcgg 6540 caaagatccc gggattcaca gcagaaccca ctaacccaga gcaggtgtct atgaataata 6600 atatattagc taatttgttt ggtaatatag caataatagg tactagtgcg tcagtcttgt 6660 cttacccaat atctgtccct tgttataacc tggagtctgg tcgtatttta ggagctgaaa 6720 cggtgggtga accactcaag gtggcccaat tggtgatgta catgatagca gtgaggaatt 6780 caactgtaga tccccctctt gctaatctga ctctacgcca aatgtgcaca ccattcgccc 6840 cagaggcata cctcttcttg aggactgctg caagctcaaa aatatacact cagctggcta 6900 ggaaaatgac aaggataggt aataaagagc cgcaagtggt ctttgacttt gcaaaaggtc 6960 tgcccttaag ctccttaact cgaagtgagg ctagttgcat ccaagtgatg caccagaggc 7020 tctttcgaac agaaggcgcc aaggcagtat ttgatgctca gtcacaggtt ggtgaaagct 7080 cggtggaagt ctagactaag tcaattaagg tatgggtagt gcttatctag gtgagtctcg 7140 tagtgctgca aaacgtagag cggtaaggta tggtaggtgt tattgttgtg gtagattaga 7200 atgtaatggt aatgtgcgca caactatatc acaagatcaa gttaagcagg ccataagaac 7260 cccggcgact aggtttttaa ccgaaaacga gggtaattac aaaaatgctg caatcaactt 7320 ggctcttagt gatctagtaa gaatggggaa gtctgagtac ccatataagc ttaaatacaa 7380 taaagctcca atgggtatgc gcagcccaga ggaaacgcca gaattctatt tctggaataa 7440 tagtgatttc aacgcaactt aggcgtgttg gttgattgac cctactaata gtcaatcttc 7500 tctggttagc ttagccccca gggaatactg tcatagggcg aaataacaga aacggtacat 7560 accgtttt 7568 //