Dbfetch

Dbfetch

ID   GU733453; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   GU733453;
XX
DT   20-SEP-2010 (Rel. 106, Created)
DT   20-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rotavirus D chicken/05V0049/DEU/2005 segment 11, complete sequence.
XX
KW   .
XX
OS   Rotavirus D chicken/05V0049/DEU/2005
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.1128/JVI.00332-10.
RX   PUBMED; 20631147.
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   "The genome segments of a group D rotavirus possess group A-like conserved
RT   termini but encode group-specific proteins";
RL   J. Virol. 84(19):10254-10265(2010).
XX
RN   [2]
RP   1-672
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   ;
RL   Submitted (09-FEB-2010) to the INSDC.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diederdorfer Weg 1, Berlin 12277, Germany
XX
DR   MD5; 939b9e754e0430e83d1815fcf6ec05c0.
DR   EuropePMC; PMC2937790; 20631147.
XX
CC   GenBank Accession Numbers GU733443-GU733453 represent the complete
CC   genome of Rotavirus D strain 05V0049.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT                   /segment="11"
FT                   /host="chicken"
FT                   /strain="05V0049"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:884200"
FT   CDS             30..617
FT                   /codon_start=1
FT                   /product="NSP5"
FT                   /db_xref="UniProtKB/TrEMBL:E2EBV0"
FT                   /protein_id="ADN06434.1"
FT                   /translation="MMDDLDFNFESNLPEISLISSRAGTTYTKIDYDEDMLLDDITPSD
FT                   SASSQDTNQRTFREKSFKSSSMVSQCDEDDIASQEMNKLETIVNSACADEQQNIDDWNE
FT                   YLEENSGIKIMEGKVSTNEVDLNGVFESKILNRNSIINKDNIDSAVKKKANINKMNMHD
FT                   TSSDEECNRNCKCCKKLRKLRKRMSILIAESY"
XX
SQ   Sequence 672 BP; 256 A; 90 C; 125 G; 200 T; 1 other;
     ggttttaaat tgctactaga gatacataca tgatggatga tttagacttt aattttgaat        60
     ctaatctacc tgaaatatct ttaatttcgt cacgagctgg aacaacatat acgaaaatag       120
     attatgatga agatatgttg ttagatgata ttactccatc agattcagca tcatcacagg       180
     atactaatca gagaactttt agagaaaaat cttttaaatc ttcatctatg gtttcacagt       240
     gtgatgaaga cgatattgct agtcaagaaa tgaacaaatt agaaaccatc gttaatagcg       300
     catgtgcaga tgaacaacaa aacattgatg attggaacga atatctagag gaaaatagcg       360
     gtattaagat tatggaagga aaagtttcta caaatgaagt tgatttgaat ggtgtgtttg       420
     agtctaagat attaaaccgc aactcaataa ttaataaaga taatattgat agcgctgtca       480
     agaagaaggc aaatattaat aagatgaata tgcatgatac gtcgtctgat gaagaatgca       540
     atcgtaactg caaatgctgt aaaaaattga gaaaattaag aaaacgtatg agtattttaa       600
     ttgctgaaag ttattaraga aaatcattct aatgtatgta ctctagggtg accccgcacc       660
     caccttgtga cc                                                           672
//