ID   GU733448; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
XX
AC   GU733448;
XX
DT   20-SEP-2010 (Rel. 106, Created)
DT   20-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.
XX
KW   .
XX
OS   Rotavirus D chicken/05V0049/DEU/2005
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus.
XX
RN   [1]
RP   1-1353
RX   DOI; 10.1128/JVI.00332-10.
RX   PUBMED; 20631147.
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   "The genome segments of a group D rotavirus possess group A-like conserved
RT   termini but encode group-specific proteins";
RL   J. Virol. 84(19):10254-10265(2010).
XX
RN   [2]
RP   1-1353
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   ;
RL   Submitted (09-FEB-2010) to the INSDC.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diederdorfer Weg 1, Berlin 12277, Germany
XX
DR   MD5; 6af97f16bd20c623e247fd126093cedf.
DR   EuropePMC; PMC4036792; 24855935.
XX
CC   GenBank Accession Numbers GU733443-GU733453 represent the complete
CC   genome of Rotavirus D strain 05V0049.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1353
FT                   /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT                   /segment="6"
FT                   /host="chicken"
FT                   /strain="05V0049"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:884200"
FT   CDS             21..1217
FT                   /codon_start=1
FT                   /product="VP6"
FT                   /db_xref="GOA:E2EBU4"
FT                   /db_xref="InterPro:IPR001385"
FT                   /db_xref="InterPro:IPR008935"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="UniProtKB/TrEMBL:E2EBU4"
FT                   /protein_id="ADN06428.1"
FT                   /translation="MEALSSIALTVREAREKIINGTIYSNVSDVIQQFNQMVRVLNGST
FT                   FTTGGLATMPLREWTFDLPQLGTTLLNIDANYVESMTPTLDMLTEFVIAVCETELLVDN
FT                   NRNGAYPQSEALRLLSNNKYVFLNMDLGSKYISEWHYRLSARDPMFSNHVPYIFPYDMA
FT                   IAYDRVTAAYDNVSGTRFASLNNAIHFAAFDQDFVRGQPANARQFEYLYNLRTPVSNAT
FT                   IVIHPISDILSVPSMIRNQAATHYWPYNPYNIPTFRDDIRVEFQLAGQVIYVAANLGMH
FT                   TIPQFDAVNIILTMRRLPLLADLQNIFPAGNPSATHQAVISTKIEVLNATTETTVPSIN
FT                   EHLYALIVGTRGRYQMQAGPVFPPGMRWDDILNRYTPARQSNMHRLMTTASILDLVSM"
XX
SQ   Sequence 1353 BP; 433 A; 248 C; 277 G; 395 T; 0 other;
     ggttttaaat agtaatcaag atggaggcgc tgtcttcaat tgcgttgact gtcagagaag        60
     cacgagaaaa gatcataaat ggaacaatat attccaacgt atcagatgta atacaacaat       120
     tcaatcaaat ggttagagta ttgaatggat caacttttac tactggtgga ttggctacta       180
     tgccacttag agaatggact tttgatctgc cgcaattggg tacaacctta ctaaatatag       240
     atgctaatta tgtagaatcg atgacaccaa cacttgatat gttgactgag tttgtgattg       300
     ctgtatgtga aactgagttg ctagttgata acaatagaaa tggtgcatac ccacaatctg       360
     aagcactgag attactctct aacaataagt atgttttcct taatatggat ttaggatcta       420
     agtacatctc agaatggcat tatagattgt cagctaggga tccaatgttt tcaaaccatg       480
     taccatatat attcccatat gatatggcta tagcatatga tagagtaacg gctgcttacg       540
     ataatgtgtc aggaacacga tttgcatcac taaataatgc tatacatttc gctgcatttg       600
     atcaagactt tgttcgtgga cagccagcta atgcgaggca atttgaatac ctgtacaatt       660
     tgaggacgcc agtgtctaac gctactatag ttatacaccc aatatcagat attttgtcag       720
     taccaagtat gatcagaaac caagctgcca cacactattg gccatacaac ccatataata       780
     taccgacgtt tagagatgac attagagttg aattccaact tgcaggacaa gtaatatatg       840
     tagctgcgaa tctgggaatg catactattc cgcaattcga tgcagtaaat atcatcttga       900
     caatgaggag attgccgttg ctagctgatt tgcaaaatat attcccagct ggaaatccat       960
     cagcaacgca tcaagctgtg atttcaacta aaattgaagt gctgaatgcg acaactgaga      1020
     caactgtgcc atctattaat gaacatttgt atgctttaat tgtaggaact agaggtagat      1080
     atcagatgca ggctggacca gtctttcctc ctggtatgcg ttgggatgat attctgaata      1140
     ggtatacacc agcgagacaa tctaatatgc accggttgat gacaactgct tccatacttg      1200
     atctagtttc catgtaggcg cggaagatgc cactcgagat aacatcaagg ttaaaatacg      1260
     tggaactagg ctgagtatgt ggcacagtaa tgcggagtaa tatctgcatg gaagaaatct      1320
     gttatcatac gtcagcagct attatctttg acc                                   1353
//