ID   GU733447; SV 1; linear; genomic RNA; STD; VRL; 1872 BP.
XX
AC   GU733447;
XX
DT   20-SEP-2010 (Rel. 106, Created)
DT   20-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rotavirus D chicken/05V0049/DEU/2005 segment 5, complete sequence.
XX
KW   .
XX
OS   Rotavirus D chicken/05V0049/DEU/2005
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus.
XX
RN   [1]
RP   1-1872
RX   DOI; 10.1128/JVI.00332-10.
RX   PUBMED; 20631147.
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   "The genome segments of a group D rotavirus possess group A-like conserved
RT   termini but encode group-specific proteins";
RL   J. Virol. 84(19):10254-10265(2010).
XX
RN   [2]
RP   1-1872
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   ;
RL   Submitted (09-FEB-2010) to the INSDC.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diederdorfer Weg 1, Berlin 12277, Germany
XX
DR   MD5; 9b95427cfe85c570a153b62cd6c879fe.
XX
CC   GenBank Accession Numbers GU733443-GU733453 represent the complete
CC   genome of Rotavirus D strain 05V0049.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1872
FT                   /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT                   /segment="5"
FT                   /host="chicken"
FT                   /strain="05V0049"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:884200"
FT   CDS             38..1762
FT                   /codon_start=1
FT                   /product="NSP1"
FT                   /db_xref="UniProtKB/TrEMBL:E2EBU3"
FT                   /protein_id="ADN06427.1"
FT                   /translation="MATRQLRFEYSVLKFTLANQYSIIKSSDYVSQMRWLEDKKPNVTL
FT                   WRTLNPTQMNKSEPCGNCLTCGCFHNVYSCDFCSVNHICKSCKQNYSDLCPFSLKQSRF
FT                   MMDMIDCGPIWELTEDILYEKLQPLYLKYFHVLSNPNYEKIAMEDRHRRCIGARIHYGS
FT                   TIHADINDCFLPSSVIAFRAMKNSQLHTFLIFGHYEPALNRENMLSYTHLNLRRYRKVS
FT                   DFIDIYNIRLAMTRGNSTRPMITLDISANAESIPVISQQTCINSYTHTYDSDLKSISLA
FT                   LIVNNNGNLTLRRPILDCLNSYNVMKEMFIARLVKYLNLELPHMLQKHYKTMLELSYSI
FT                   RTPDKGVFSVSYPIFDDELLITMLQNFELVKYLVEYAVHVSEHFNQQDEIDESCPICAD
FT                   FMSFEQQFEMAYNITKCRRDCEVIFVPSDDLSGLFTVRHVCREGLLIHEIPFKLRMLIL
FT                   TITQSVRVNRGIHQLNSYPSWYADVDQDQGDDLDKLQRLWPLSLNTLWNVIRQKQLKPL
FT                   NYTVISEEDEDGIAFTEEDEEGIMLIDKPNEYKWLRYVTCVIGPDTDEEIEFYDGPY"
XX
SQ   Sequence 1872 BP; 650 A; 307 C; 365 G; 550 T; 0 other;
     ggtttttaaa agacctttat acaatcagtg cgtcactatg gcgacgagac aactaagatt        60
     tgaatactca gttttgaaat ttactttagc taatcagtat tcgatcataa agtcgagtga       120
     ttacgtttca cagatgagat ggctggagga caaaaaacca aatgtaactc tttggcgtac       180
     tttaaatcca actcagatga ataaatctga accgtgtgga aattgtctta cgtgtggatg       240
     ctttcacaat gtgtattctt gtgatttctg ttcagttaac catatctgta aatcatgcaa       300
     acaaaactac tctgatcttt gccctttttc acttaaacaa tctcgcttca tgatggacat       360
     gatagattgt ggaccaattt gggaactgac ggaagacata ctgtatgaaa agctgcaacc       420
     actgtacttg aagtactttc atgtgctatc aaatccaaat tatgaaaaaa ttgcaatgga       480
     ggacagacat cgcaggtgca taggtgccag aatccattat ggatcaacaa ttcatgctga       540
     catcaacgat tgctttctgc caagtagcgt tatagccttt agagctatga agaattctca       600
     gcttcacact tttcttatct ttggacatta tgaaccagca cttaatcgag aaaacatgtt       660
     gtcatacacg catcttaatt tgaggcgata caggaaagta agtgacttca tcgacatcta       720
     caacattaga ttggcaatga caagaggaaa ctcgactaga ccaatgatta cattggacat       780
     ttctgcaaat gcggaatcaa ttccagtgat tagccaacaa acatgcatta acagctatac       840
     tcatacttat gattctgatt tgaaatcaat aagtttagcg ctaattgtga ataataatgg       900
     gaacttgacg cttcggagac caattctaga ttgcttaaat tcatacaacg tgatgaaaga       960
     aatgttcatt gcaagattag tgaaatattt aaatttagag ttaccgcata tgctacaaaa      1020
     acattataaa acgatgctgg aattgtcata ctcaatacgc acaccggata agggtgtgtt      1080
     ctcagtatct tatccgattt ttgatgatga actacttatc accatgttgc agaattttga      1140
     attagtgaaa tatttagttg aatatgccgt ccatgttagt gaacacttta atcaacaaga      1200
     tgaaattgac gaatcatgtc ccatctgtgc agacttcatg agctttgagc aacagtttga      1260
     gatggcgtac aatataacaa aatgtagacg tgattgcgaa gtaatatttg ttccatctga      1320
     tgacttgtcc ggtctattta cagtgagaca tgtatgtaga gaaggactgt tgattcatga      1380
     aataccattc aaattgagaa tgttgattct gacaattacg caaagcgtgc gtgtgaatag      1440
     aggtatacac caattgaata gttatccatc atggtacgca gatgttgatc aagatcaagg      1500
     agatgattta gataagctac aacgactttg gccactgtca ttaaatacac tttggaacgt      1560
     gattcgtcaa aagcaattga aaccactgaa ttatacagtc atttcagagg aagatgaaga      1620
     tggtatagct tttacggaag aagatgaaga aggaataatg ttgatagaca aaccaaatga      1680
     gtataagtgg ctaagatacg taacatgtgt aattggtcca gacacggatg aagaaataga      1740
     gttttacgat ggtccatatt aaatgtatac gattaaataa atgatagata atgaataaga      1800
     agtaaatcaa tattgcgaat gaaaatagaa aatagataga aagatagcgc ctaggcagca      1860
     taaaatgtga cc                                                          1872
//