ID   GU733446; SV 1; linear; genomic RNA; STD; VRL; 2104 BP.
XX
AC   GU733446;
XX
DT   20-SEP-2010 (Rel. 106, Created)
DT   20-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rotavirus D chicken/05V0049/DEU/2005 segment 4, complete sequence.
XX
KW   .
XX
OS   Rotavirus D chicken/05V0049/DEU/2005
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus.
XX
RN   [1]
RP   1-2104
RX   DOI; 10.1128/JVI.00332-10.
RX   PUBMED; 20631147.
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   "The genome segments of a group D rotavirus possess group A-like conserved
RT   termini but encode group-specific proteins";
RL   J. Virol. 84(19):10254-10265(2010).
XX
RN   [2]
RP   1-2104
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   ;
RL   Submitted (09-FEB-2010) to the INSDC.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diederdorfer Weg 1, Berlin 12277, Germany
XX
DR   MD5; d767919b9ef929d185f4cbdc4373af97.
XX
CC   GenBank Accession Numbers GU733443-GU733453 represent the complete
CC   genome of Rotavirus D strain 05V0049.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2104
FT                   /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT                   /segment="4"
FT                   /host="chicken"
FT                   /strain="05V0049"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:884200"
FT   CDS             15..2072
FT                   /codon_start=1
FT                   /product="VP3"
FT                   /db_xref="GOA:E2EBU2"
FT                   /db_xref="InterPro:IPR011181"
FT                   /db_xref="UniProtKB/TrEMBL:E2EBU2"
FT                   /protein_id="ADN06426.1"
FT                   /translation="MRLVVCSDEQSKTPLVNATLYRYRSNVHPAENAFLACNQIAEIIL
FT                   VINCSNFDKFSENVRSNGICCVDTRGNDDLFKSVVSGNCLFNENEVITIDYGYYRYKTL
FT                   RTMFTYIFSFPKTEFKWESVPPSELCNDDDILTNYLYRSDKSVKFEEFIQQKILERLSF
FT                   ALRHEKYESRLLRTKVYNLYKNEKPIVIGPRNESMFELLSLNFTYYSANEFTVKDLSSL
FT                   QSSRFREITLNEFDVGQYKNMLNFLSLYYYHVNHYGLPNRIVIIGSYPSKWLILLRNSG
FT                   LNCEIILYDVKLDDSQKDIREFVFRNKFYTFDDSYTDIIDNSIVYLDARIEYSRDSEID
FT                   RRKKIELDTKIYFEWCDRLVRHFNKVTIMCKYTAMNGNLYKNIKLVNHIRTSIRSEVYL
FT                   LFNIDDVSSEKVYIDKGKIYSFIQNHITDNVFIGKTFKVTKINKSTRPVVALYSLSNTL
FT                   NDRKLCLSYINTTRRGILTYRARNNFTNEDLISYDKFKDYSCLRTELKSSDNSIVTSLS
FT                   GALGVFGCQTTFNDKADGNVHFHVIKGIERTNIDKYALHLQISRRSQFLRFTETATSLS
FT                   GYLFRDLASEGFSNDLSETDSNNAASGHVYNALIYFRYNWRFDLIYWMEKHINSNQIQS
FT                   VGTNYYKHSIREIVNAINAAKKYAELQNDETLINYINTLIQLYPTNLLRR"
XX
SQ   Sequence 2104 BP; 776 A; 273 C; 365 G; 690 T; 0 other;
     ggcttttaaa gcacatgaga ctagtagtgt gtagcgatga gcagtctaag actccattgg        60
     ttaatgcaac tctatatagg tatcgatcta atgtacatcc agctgaaaat gcatttctcg       120
     catgtaacca aatcgctgaa atcatactcg ttattaattg ttcaaatttt gataaattta       180
     gtgaaaatgt taggtcgaat ggcatttgct gtgtggacac tagaggtaat gatgatcttt       240
     ttaaatctgt tgtatctgga aattgtttat ttaacgaaaa tgaagttatt actattgatt       300
     atggttatta taggtataaa acgttacgaa ccatgtttac gtatatcttt agctttccga       360
     aaacagaatt caaatgggaa tcagtaccac caagtgaact gtgcaacgat gatgacattt       420
     taactaatta tttatataga agtgataaat cagttaaatt tgaggaattt attcagcaga       480
     aaatattgga aagactatct tttgcgttac gacacgaaaa gtatgaaagt aggctactga       540
     gaacaaaagt atataatcta tataaaaatg aaaaaccaat agtaataggt cctaggaatg       600
     aatcgatgtt cgagctatta agtttaaact ttacatacta ttcagcgaat gaatttacag       660
     ttaaagatct atcatcatta caatcatcta gatttcggga aattactttg aatgaatttg       720
     atgtggggca gtataaaaac atgttgaatt ttttatcttt atattattat cacgttaatc       780
     attatggatt accaaatcgt atagtaataa taggatcata tccatctaaa tggttaatat       840
     tgctacggaa ttcagggctg aattgtgaga ttatactata tgatgtgaaa ttagatgata       900
     gtcaaaaaga cataagagaa tttgtattta ggaataaatt ttatacattt gatgactcgt       960
     acacagatat aatagataat tcaatagttt atctagatgc tagaattgag tattcacgag      1020
     atagtgaaat agatcgtcgt aaaaagatag aattagatac taaaatatat tttgaatggt      1080
     gtgatcgtct agtcagacac tttaataaag taactattat gtgcaaatat acagctatga      1140
     atggtaattt atacaaaaat attaaattag taaatcacat cagaacatct attagaagtg      1200
     aagtgtattt attatttaac atagatgacg ttagttcaga gaaagtatat atagataaag      1260
     gtaagatata ttcatttata caaaatcaca taacggataa tgtgtttata ggaaaaacct      1320
     tcaaagtaac taagataaat aaaagtacca gaccagtagt tgcattatac tctctatcaa      1380
     atacgttgaa tgacaggaaa ttatgcttat catatatcaa tacgacgcgg agaggtattt      1440
     taacatatag agccagaaat aattttacaa atgaggatct aatatcttat gataagttta      1500
     aagattattc atgtttgcgt actgaattaa aatcaagtga taattcaata gttacttcat      1560
     tgtcgggagc gttaggagtg tttggttgtc aaacaacatt taatgacaaa gctgacggta      1620
     atgtccattt tcatgtcatt aagggaatag agagaactaa tattgacaaa tatgctttgc      1680
     acttacaaat atccagaaga tcacaatttt tgagatttac tgagacagcc acatcattat      1740
     caggttattt atttcgtgat ttggcgtcag agggattctc caatgattta agtgaaactg      1800
     atagtaataa tgctgcttcg ggccacgttt ataacgctct gatatacttt agatacaatt      1860
     ggagattcga tttaatatat tggatggaaa aacatataaa tagtaatcaa attcagtcgg      1920
     ttggaacaaa ttactataaa cattctataa gagaaatagt gaatgctatt aatgcagcta      1980
     aaaaatatgc ggaattgcaa aatgacgaaa cgttaattaa ttatatcaac acattgattc      2040
     agttgtatcc taccaatctt cttaggcggt aacacgcagt cctgctcatc ccctttatgt      2100
     gacc                                                                   2104
//