ID GU733445; SV 1; linear; genomic RNA; STD; VRL; 2366 BP. XX AC GU733445; XX DT 20-SEP-2010 (Rel. 106, Created) DT 20-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rotavirus D chicken/05V0049/DEU/2005 segment 3, complete sequence. XX KW . XX OS Rotavirus D chicken/05V0049/DEU/2005 OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-2366 RX DOI; 10.1128/JVI.00332-10. RX PUBMED; 20631147. RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT "The genome segments of a group D rotavirus possess group A-like conserved RT termini but encode group-specific proteins"; RL J. Virol. 84(19):10254-10265(2010). XX RN [2] RP 1-2366 RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT ; RL Submitted (09-FEB-2010) to the INSDC. RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment, RL Diederdorfer Weg 1, Berlin 12277, Germany XX DR MD5; ff86a62c3bd1c3f28446d2be5692876b. XX CC GenBank Accession Numbers GU733443-GU733453 represent the complete CC genome of Rotavirus D strain 05V0049. XX FH Key Location/Qualifiers FH FT source 1..2366 FT /organism="Rotavirus D chicken/05V0049/DEU/2005" FT /segment="3" FT /host="chicken" FT /strain="05V0049" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /db_xref="taxon:884200" FT CDS 10..2343 FT /codon_start=1 FT /product="VP4" FT /db_xref="GOA:E2EBU1" FT /db_xref="InterPro:IPR035329" FT /db_xref="InterPro:IPR035330" FT /db_xref="InterPro:IPR038017" FT /db_xref="UniProtKB/TrEMBL:E2EBU1" FT /protein_id="ADN06425.1" FT /translation="MASSLWTSLNASLQDLDIYNRLDKKENHETKNQNIVNTTMLGTAS FT LGPVKWSSGPTFNSSLTEGMLGPNSQQSMNTSQLVQLFSSYGSPFYVYFDYSNTSTNNL FT AHQLVRFQTLKNDQSTREEGIFLCESQCNGITFAGHTLNLTTGTVKIVKVWENDTATAL FT GSMYYNYPAGYVLSASLKLEHTANNTITVKLYNPTARLYGDENVHQAGQQIFAITSAYY FT VSKVDPGDLITTPASAPQLYAFEVEENLYNIVRQQPNCRSRKLNGLANINMQMTTYDAD FT VSVEEVISKESLWKEVRYANDIELKLVLKSVITRASGLGYKFASAVFKPHSYDYNYMRG FT TERVNAYVTSSVNNIFVTSENGPLPTDFGIDELQYIGVDTLVYLDYYDDSNAFKNMVYV FT RSLDAQFNDILLRKPHNTGYDTEITLPCCPSGKHLYSNSPRNLTLSYQGVMLSTQYTDT FT YAVNSLRFIFKCTAADRAVFDRMVYNGIEASAITTLYMNSSGPTTTGRFSFISLIPSND FT AYQTPIQSSVTVRQDLDKDIAKLREEFNALSQEIAVNQLIETAMLPLDVMSTSGAVASG FT ASTISTSIKNVSKQFSKSKASITLTSFKNLSDIVDSVPTDQLAKNLNHVSKRSIGTQFE FT DITAAVVKKTMDKGIGTDDMAELITDIADSAIPVRAYRVIDKSENAVYEVSSIGKAIKY FT DTELTQLPFDEIKFKKLISESPVISAIIDFQTLKLYNQTFGKIDANVLDNFLASNPEIL FT LKMVNEKNPIITDRIKTLIEQCRI" XX SQ Sequence 2366 BP; 866 A; 388 C; 428 G; 684 T; 0 other; ggcaataaaa tggcttcatc gttatggact agtttgaacg catcactaca agacttggac 60 atctataata gattagacaa aaaagaaaac catgagacaa agaatcagaa tatagtgaat 120 acaacaatgc ttggtactgc ttcattagga ccggtaaaat ggagttctgg accaactttt 180 aattcatcat taacggaagg aatgttggga ccaaattcac agcagtcaat gaatacttcg 240 cagttagtgc aactattttc atcttatggg tcaccattct atgtgtattt tgattattca 300 aacacatcaa caaataatct tgcacatcag ttggttagat ttcagacact gaaaaatgat 360 caatctacaa gagaagaggg aatattcctg tgtgaaagtc agtgtaatgg aatcacgttt 420 gctggacata cattgaattt aacaactggg acagtcaaaa ttgttaaagt ttgggaaaat 480 gacactgcta ccgcgctagg gtcaatgtat tataactatc cagctggtta tgtattatca 540 gcttcactta aattggaaca tacggcgaat aatactataa cagttaaact ctacaatccg 600 actgctagat tatacggaga cgaaaatgta catcaagctg gacaacagat ttttgctatt 660 acttcagcat attatgtgtc gaaagtagat cctggggatt taattacaac gccagcatca 720 gctccacaac tttatgcttt tgaagttgaa gaaaatttat ataacatagt taggcaacaa 780 cctaattgca gatcaagaaa attaaatggt ttagcaaata taaatatgca aatgacgacg 840 tatgatgctg atgtttcagt agaagaagtg atatctaaag aatcattatg gaaagaagta 900 agatatgcta atgacataga attgaagtta gtacttaagt cagtgataac tagagcgtct 960 ggattaggat ataaattcgc gtcagcagta ttcaagccac attcttacga ttataattat 1020 atgagaggga ctgaaagagt taatgcatat gtgacttcat cagtaaataa tatattcgtg 1080 acttcggaaa atggtccttt accaacagat tttggaatag atgaattaca atatatagga 1140 gttgatacat tagtttattt agattactat gatgattcaa atgcattcaa aaatatggta 1200 tatgtgaggt cattagatgc acaatttaat gatatattgt tacgaaaacc acataataca 1260 ggctacgata cagaaattac actaccatgc tgccccagtg gaaagcattt atattcaaat 1320 agtccaagga atttaactct atcatatcaa ggcgtaatgc tgtctactca atatactgat 1380 acctatgccg taaactcatt acgatttata tttaaatgta cagcagctga tcgagcggtg 1440 ttcgatagaa tggtatacaa tggaattgaa gcttcagcga tcacaacatt atacatgaat 1500 tcatcagggc caacaactac tggaaggttc tcatttatat ctctgatacc atcgaatgac 1560 gcttatcaga ctccaattca gtcctcagtt accgtaagac aagatctgga taaagatata 1620 gcgaaattaa gagaagaatt taatgcactt tcacaagaaa tcgctgttaa ccaactgatt 1680 gaaacagcaa tgttgccact cgacgtaatg tcaacgtccg gagcagtagc atcaggagca 1740 tcaacgatct ctacatcaat taaaaacgtc tcaaaacaat tctctaaatc aaaggcatca 1800 ataactttga catcatttaa aaatttgtca gatatagtgg attcagtacc aactgatcag 1860 ttggcaaaaa acttgaatca tgtgtcaaaa cgatccattg ggacccaatt tgaagacata 1920 actgcagctg tcgtcaagaa aactatggat aagggaattg gtacagatga tatggcagaa 1980 ttgattacag atattgctga ttcagcaata ccagttagag cttatagagt aatagacaaa 2040 agtgaaaatg ctgtatatga agtgtcatct atagggaaag ctattaaata tgacacagaa 2100 ctaacccagt tgccatttga tgagattaaa tttaagaagc tgatatctga gtcgccagtt 2160 atatcggcta taatagactt tcagacatta aagctatata accaaacttt tggtaaaata 2220 gatgctaatg tattagataa tttcttagct tcaaatccag aaattctgct taagatggta 2280 aatgaaaaga atcctatcat aacagataga attaaaacat taattgaaca atgtagaatc 2340 tagtccataa tcgtactatt gtgacc 2366 //