ID GU733444; SV 1; linear; genomic RNA; STD; VRL; 2801 BP. XX AC GU733444; XX DT 20-SEP-2010 (Rel. 106, Created) DT 20-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete sequence. XX KW . XX OS Rotavirus D chicken/05V0049/DEU/2005 OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-2801 RX DOI; 10.1128/JVI.00332-10. RX PUBMED; 20631147. RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT "The genome segments of a group D rotavirus possess group A-like conserved RT termini but encode group-specific proteins"; RL J. Virol. 84(19):10254-10265(2010). XX RN [2] RP 1-2801 RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT ; RL Submitted (09-FEB-2010) to the INSDC. RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment, RL Diederdorfer Weg 1, Berlin 12277, Germany XX DR MD5; 3b3d1e2cdf18f23820f4a5db335d02c7. XX CC GenBank Accession Numbers GU733443-GU733453 represent the complete CC genome of Rotavirus D strain 05V0049. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="Rotavirus D chicken/05V0049/DEU/2005" FT /segment="2" FT /host="chicken" FT /strain="05V0049" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /db_xref="taxon:884200" FT CDS 40..2781 FT /codon_start=1 FT /product="VP2" FT /db_xref="GOA:E2EBU0" FT /db_xref="InterPro:IPR007779" FT /db_xref="UniProtKB/TrEMBL:E2EBU0" FT /protein_id="ADN06424.1" FT /translation="MRKNKLIQDKEREKSKSKDETRTERGKTDRNTTNSLKNGVETDCN FT DGNCVDNVNVDSKNDKKEERTKKDYIKSEKKSDGASDTKEKENGSKDKVVSNEENKKNE FT KELAEILKTKEEVTKDLDKEIFYKYIPTFDVNIDIVKKMLDIPSVSPKDEKTLFRLFDL FT KNLPLYDTSAVRTLETRWVWKLKKDDLPDDSYSVREYFQGLYEHILSIIPDYIMLRNMA FT VDNTRSRYNGKIVDKESLDIVNKLFVDDQIDNQIRLYISDMNHTTIARTNTIIYPAIMN FT PIDHEFNEYFLNAQLIEELNTGVIMNMIPRQLRADSNYNFALENSFNHTARYLPQLLMQ FT DRIAIHEISSLWDSMTTANYVLARSVIPDLKDLLPADVQITEMAANLNLEALTTQVETA FT YLSGITTESANECFKIIIASLLSTRTISMSYSGNNYVSLFSGMYLLSIIPFNSMLRESV FT ISLQLAIVNSILYPAFGLPQLTYTYLDQDTPFMIAQQTISNRRVREWLQHVNNFDFPRV FT NRDGVFVYTVPDRIRYGNIVNLFSETVTELANQQFRTYTLEYQRAIKRAIQLFVRRVPQ FT ILDLTRLMFYNYEVLLRMIVMSQQRMITLTTEKLDLTRVTSLLFLISNTVVFPDPQSLM FT RYYSANRNFLNNYNERIDDTVARLYASNRLNLYRKKVLSIVTDFVRNLYIFEATKVPAD FT QMYNLRDRLRRLPLENRRQRVFDIMMNNQDQIIHASDKIAHGVVLFRNERELINDEYEG FT LTNVVRNIDGNALSIEEIRNRGDYQPLIDSLLQTNSVALKGVIPFNTTHNPFELIAKVD FT VSIFAPVLKDRDINKLKPVKYAINSDSQSFYIVANNNWKPTSSTAVYKLQPRQFDFTQS FT LFQLTSRLFFQVFKDPLTFLTIRTVDPIIAVASDNRRIILSV" XX SQ Sequence 2801 BP; 1043 A; 410 C; 501 G; 847 T; 0 other; ggcatataaa ctgcgacact gataatcttt cttgttacga tgcgaaagaa taaactaata 60 caagataaag agagagaaaa atctaaatct aaagatgaaa caagaaccga gcgaggaaag 120 actgatagaa acactacaaa ttcgttaaaa aatggagtag agacggattg taatgatggt 180 aactgcgtgg acaatgttaa tgtagatagt aaaaatgata aaaaagaaga gagaacgaaa 240 aaagattaca ttaaaagtga aaaaaagagt gacggtgcat ctgatactaa agagaaagaa 300 aatggatcta aggataaagt tgtatcaaat gaagagaata agaaaaatga aaaggagcta 360 gcggaaattc tgaaaacaaa agaagaagtt actaaagact tagataaaga aatattttat 420 aaatatatac cgacatttga tgttaatata gatattgtta agaaaatgtt agatatacca 480 tctgtttcgc caaaggatga gaaaacatta tttagattat ttgatttaaa aaacctgcca 540 ttgtatgata cttcagcagt taggacacta gaaacgagat gggtgtggaa gcttaaaaaa 600 gatgatttgc cagatgattc ttactcagtg cgtgagtact ttcaaggttt atatgaacac 660 attctatcaa taataccaga ttatataatg ttgaggaata tggctgtgga taatactaga 720 tcgagatata atggaaaaat tgttgataaa gaatcattag atatagttaa taaattattt 780 gttgatgatc agatagataa ccaaattagg ctttacattt cggacatgaa ccatactact 840 atagcaagaa caaatacaat tatatatccg gctattatga atccaataga tcacgagttt 900 aatgaatatt ttttgaatgc tcagctgatt gaagaattaa atactggagt aattatgaat 960 atgattccaa gacagctaag agccgattct aactacaatt ttgctttaga aaattcgttt 1020 aatcacactg ctagatattt acctcagttg ctaatgcagg ataggatagc aattcatgaa 1080 ataagttcac tatgggattc aatgacaacc gcaaattacg tattagctag atcggttatt 1140 ccagatttga aggatttatt accagctgat gttcaaatta ctgagatggc tgctaatcta 1200 aatttggaag cattaaccac acaagttgag acagcttatt tatcaggtat aacgactgaa 1260 tctgcaaatg aatgttttaa aataattata gcatcacttc tatctacacg tactatatca 1320 atgagttatt ccgggaataa ttatgtttca ttattctctg gaatgtattt actatcaatt 1380 ataccattta attcaatgct acgtgagtca gttatatctc tacagctagc aattgtaaat 1440 tcaattcttt atccagcgtt tggtctacca caacttacgt atacatacct agatcaagat 1500 actccattta tgatagctca acaaactatt agtaatagaa gagtacgaga atggctacag 1560 cacgttaata actttgattt tccaagagta aatagagacg gtgtatttgt atatactgtg 1620 ccagatagaa ttaggtatgg taatatagta aacttattct ctgaaacagt gacagaatta 1680 gcgaatcaac agtttaggac gtatacttta gagtatcaaa gagctatcaa aagagcaatt 1740 cagttatttg ttaggcgtgt tccacaaata ctagatctga cgagattgat gttttacaac 1800 tatgaagttc tattacgtat gatagtaatg tcacagcaac gaatgataac tttaactact 1860 gaaaaattag acttaactag agtaacatct ttgctattcc taatatctaa tacagttgtc 1920 tttccggatc ctcaatcttt aatgagatat tactcagcga ataggaattt tctgaataac 1980 tataatgagc gtattgatga tactgtcgct agattatatg cgtcaaatag attaaatttg 2040 tatcggaaga aagtattatc aattgttact gattttgtta ggaacttata tatttttgaa 2100 gcaaccaagg taccagcaga tcaaatgtat aatttacgag atagattaag acgtctaccg 2160 ttggaaaaca gaaggcagag agtctttgat attatgatga ataatcagga tcagataatt 2220 catgcatctg ataaaatagc acacggtgtt gtgttgttca gaaatgaacg agaattaatt 2280 aatgatgaat atgaaggatt gacaaacgta gttcgtaaca tagatggaaa cgcactatct 2340 attgaagaga tacgtaatcg tggagattat caaccactca tcgatagttt attacaaact 2400 aattcagttg ccctcaaggg agttatacca ttcaatacga cacataatcc gttcgaactg 2460 atagcaaagg tcgatgtgtc aatttttgca ccggtactta aggatagaga cattaataaa 2520 ttaaaaccag ttaaatacgc aataaactct gattcacagt cattttacat tgtcgcaaat 2580 aataattgga agccgacatc atcaactgca gtatataagt tacaaccacg acaatttgat 2640 tttacacagt ctctatttca gcttacgtca agactatttt tccaagtatt taaagatccg 2700 cttactttcc taactatacg aactgtggac ccgataattg cagtcgctag tgacaaccga 2760 aggattatct taagtgtgta ggccactgtg cctttgtgac c 2801 //