ID GU733443; SV 1; linear; genomic RNA; STD; VRL; 3274 BP. XX AC GU733443; XX DT 20-SEP-2010 (Rel. 106, Created) DT 20-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rotavirus D chicken/05V0049/DEU/2005 segment 1, complete sequence. XX KW . XX OS Rotavirus D chicken/05V0049/DEU/2005 OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-3274 RX DOI; 10.1128/JVI.00332-10. RX PUBMED; 20631147. RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT "The genome segments of a group D rotavirus possess group A-like conserved RT termini but encode group-specific proteins"; RL J. Virol. 84(19):10254-10265(2010). XX RN [2] RP 1-3274 RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT ; RL Submitted (09-FEB-2010) to the INSDC. RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment, RL Diederdorfer Weg 1, Berlin 12277, Germany XX DR MD5; c8fd1dfc4f8eae14a6fd7c1af837efc4. DR EuropePMC; PMC2937790; 20631147. XX CC GenBank Accession Numbers GU733443-GU733453 represent the complete CC genome of Rotavirus D strain 05V0049. XX FH Key Location/Qualifiers FH FT source 1..3274 FT /organism="Rotavirus D chicken/05V0049/DEU/2005" FT /segment="1" FT /host="chicken" FT /strain="05V0049" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /db_xref="taxon:884200" FT CDS 19..3258 FT /codon_start=1 FT /product="VP1" FT /db_xref="GOA:E2EBT9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR022071" FT /db_xref="InterPro:IPR042032" FT /db_xref="UniProtKB/TrEMBL:E2EBT9" FT /protein_id="ADN06423.1" FT /translation="MGTYNLLLQKYLRWLYGKDATVIPIFITNDQNNQEILNSIVDYAK FT QLAIDDKYDYKLIEDKLSKCNFDYEIVSFFTYSDQKYDNVEQKLLKYVNKKKVLVADLT FT RNKLKYENNYITKDLYTEDDYTDTLMDPSINTSLRSNLNAAMFVIENIEDKKIQSRYRH FT LFEYVASTVSHYGIPVHNQKYRYDYKEMYNKPYYLVPWANSSIEMIFAVSSHELYLVAE FT ELIINSFSNRSTLAKLTSSPMTTLTSKLDLYSCYMTTEDLELEYSDKIVKSYITDEAQL FT ELDEQIAELRKEKMTKTADIIDEWQRNPSIDTFPLMAQIYSFSFHVGYRKQMMLDAVTD FT QLSIEYSDTFDKDMYNMYTNNIIKIIDDMLRDHIKKEDKMLLNAEIAGLLSMSSASNGE FT SRVIKFGRRTVRSTKKNMHVMDDIFNKQYDLDVPDVNENNPIPLGRRDVPGRRTRVIFI FT LPYPYFIAQHSVVELYLRESKHIKEFSEFYSQSSQLLSYGDTNRYLNQSTIIVYADVSQ FT WDSSKHNTTPLRNAILKAIEQLKSYTTNEKVITALNNYALTQMKLKNSFVTIGNKVLQY FT GAVASGEKQTKLMNSIANLALITTVINYLNVGESYRIKIIRVDGDDNYFIMEFDRKVDK FT QLVTVVSNAVKDTYGRMDVKVKALTATTGLEMAKRYIAGGRLFFRAGVNILNNEKRTHT FT TTYDQAAIIYANYLVNKMRGYNMERIFILCKIMQMTSVKITGSIRLFPASLMLTTNSPY FT KVFDDVDFVQTYNSSTIAIHLQKMLISVSQVKSNLADDIAKSEKFTNYVQFLTKKLLVH FT NNKIVEMGIARTEKAKLNSYPPIANEKRNNQLKTLMTFLQTPTYKMSTDVTINDMMKII FT NEYTNYTIITDKYGIQPNPMPLLPENIQFAMSHVGARVYQIEESAARSAISKLISNYTV FT YKPSVDELYKVINSNERILFEYVTSFGVPTRDVTAYLSAKLYKKDRNLILESYIYQIMS FT VNYNAYQLFNLNSELFDKYINIVTYMKIPSVNFIIFTYLKLVILNKMLQERKLYKAYCQ FT IPKHLLHILWKMSINLATISSPYTIANFFQE" XX SQ Sequence 3274 BP; 1287 A; 437 C; 547 G; 1003 T; 0 other; ggcaattaaa gtggtaggat ggggacctat aacttactct tacagaagta tttgagatgg 60 ttgtatggga aagatgcaac agtaattcca atatttataa cgaatgatca aaataatcag 120 gagattttga atagtatagt tgattatgct aaacagttag caattgatga taaatacgat 180 tataaactaa tcgaagataa gttgtcaaag tgtaactttg actatgaaat agtgtcattt 240 tttacttatt ctgatcagaa gtatgataac gttgaacaga aattattaaa atatgtgaat 300 aaaaagaaag tgttggttgc agatcttact agaaacaaat taaagtatga gaacaattat 360 ataaccaaag atctttatac tgaagatgac tatacagata cattaatgga tccatcaatt 420 aatacatcat tacggtcgaa cttgaatgca gctatgttcg taatagaaaa tatcgaagat 480 aagaaaatac aatcgagata caggcattta tttgaatatg tggcttcaac tgtatcacat 540 tatggtattc cagtacataa ccaaaaatat agatatgatt ataaggaaat gtataataaa 600 ccatattatt tagttccatg ggcaaattca agtatagaga tgatatttgc tgtttcgagt 660 catgaattat atttagttgc tgaggaatta ataattaatt catttagtaa tagatcaact 720 ttagcgaaac ttacttcctc accaatgaca actctaacat cgaagctgga tttgtattct 780 tgttatatga ctactgaaga cttggaatta gaatattcag ataaaatagt aaaatcgtat 840 ataactgacg aagcacaact agaattagat gaacaaatag ctgaattaag aaaggaaaaa 900 atgacaaaaa cagcagatat aattgatgaa tggcaacgga atccgagtat agatacattt 960 ccactaatgg ctcaaattta ctcattttca tttcacgttg gatacagaaa acagatgatg 1020 ttggacgcag taactgatca attatcaatt gagtattcag atacttttga taaagatatg 1080 tataatatgt atactaataa tatcataaaa attatagatg acatgcttag agaccatatt 1140 aagaaagagg ataagatgtt attgaatgca gaaatagctg gattattatc gatgtcttct 1200 gcctcaaacg gtgaatcaag agtcattaaa tttggcagac gaacggtaag atcaactaag 1260 aagaatatgc atgtaatgga tgatatattt aataagcaat atgatttaga cgttccagac 1320 gttaatgaaa ataatccgat tccattagga agacgtgatg taccaggaag aagaacaaga 1380 gtaatattta ttttaccata tccgtatttt attgctcagc attccgttgt agagttatat 1440 ttacgtgaaa gtaaacatat aaaggagttt tcagaattct actcacagtc ttcgcagcta 1500 ctatcatatg gtgataccaa tcgatatttg aatcagtcaa ctattatagt ctatgctgat 1560 gtgtcacaat gggattcatc aaagcataat actacgccgt tacgtaatgc aattttgaaa 1620 gctattgaac aattgaaatc gtacacgaca aatgagaagg ttattaccgc attaaataat 1680 tatgcattaa ctcagatgaa attgaagaat tcttttgtca ctataggtaa taaggtgtta 1740 caatatggag cagtagcttc gggtgaaaaa cagactaaat taatgaattc aatagcgaat 1800 ttagcattaa ttacgactgt aataaattat ctaaacgtgg gagaatcata tagaattaaa 1860 attataaggg tagatggtga tgataattat tttatcatgg aattcgacag aaaggttgat 1920 aaacaattag ttacggttgt gtcaaatgca gtgaaagaca cttatggaag aatggatgta 1980 aaagtgaaag cattaactgc tacgacagga ttagagatgg ctaaaagata tattgctggt 2040 ggtagactgt tttttagagc aggagtaaat atattgaaca acgaaaaaag gacacataca 2100 acgacgtatg atcaagcagc aataatatat gctaattact tagttaacaa gatgagagga 2160 tataacatgg aacgaatatt catattatgt aaaataatgc aaatgacgtc agtgaaaata 2220 actggttcaa taagactatt tccagcatca ttaatgctca ctacaaattc accatataaa 2280 gtatttgacg atgttgattt tgtacaaacg tataacagca gtactatagc tatacattta 2340 caaaaaatgt taatttcagt atctcaagta aaatcaaatt tagccgatga tatagctaaa 2400 tcggaaaaat ttaccaatta tgtacagttc ttaactaaaa aattgttagt gcataacaat 2460 aagattgtag aaatggggat agcacgtact gaaaaagcta agttaaattc atatccacca 2520 atagcaaatg agaaaagaaa taatcaattg aagacattaa tgacattttt acaaactccg 2580 acatataaaa tgtcgaccga tgtaacaata aacgacatga tgaaaataat taatgaatac 2640 actaattata ccataataac tgataaatac gggatacaac ctaatccaat gccgttatta 2700 cctgagaata tacaatttgc tatgtcacac gttggagcga gagtttatca aattgaagaa 2760 tctgctgcaa gatcagcgat atctaagtta atttcaaatt acactgtata taaaccttca 2820 gtagatgaat tatataaagt cattaatagt aatgaaagaa tattatttga atacgtaaca 2880 tcatttggtg taccaacaag ggatgttaca gcgtatttat cagctaagct gtacaagaaa 2940 gacagaaact taatattaga gtcttatatt tatcagatta tgtcagttaa ttacaatgca 3000 tatcagcttt ttaatttgaa ttcagaatta ttcgataaat atatcaatat agtgacttat 3060 atgaaaattc catcagtcaa ctttattatt ttcacgtatt taaagttagt tatactcaat 3120 aaaatgttac aagagagaaa actatataaa gcatattgtc aaataccgaa acatcttctg 3180 catatattat ggaaaatgtc aattaattta gctacaatat catcgccata cactatcgca 3240 aacttctttc aagagtaatc acttacttgt gacc 3274 //