Dbfetch
ID GU723749; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC GU723749; XX DT 01-APR-2010 (Rel. 104, Created) DT 01-APR-2010 (Rel. 104, Last updated, Version 1) XX DE Tomato yellow leaf curl Thailand virus isolate H6-4 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow leaf curl Thailand virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.; RT "Molecular diversity and pathogenicity of tomato-infecting begomoviruses in RT Taiwan"; RL Unpublished. XX RN [2] RP 1-2744 RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.; RT ; RL Submitted (08-FEB-2010) to the INSDC. RL Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, RL Tainan, Taiwan 74199, ROC XX DR MD5; 677e33c4326f8f61f48d1c95411e430f. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Tomato yellow leaf curl Thailand virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="H6-4" FT /mol_type="genomic DNA" FT /country="Taiwan:Shoufong, Hualian" FT /collection_date="2007" FT /db_xref="taxon:85752" FT CDS 87..473 FT /codon_start=1 FT /product="V2 protein" FT /db_xref="GOA:A5JH98" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5JH98" FT /protein_id="ADE09285.1" FT /translation="MVPYLRLSHQVSAKFKMWDPLLNEFPENVHGFRCMLAVKYLQAVE FT KTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSHFHARLESTSPSELRQPIQQPCCCPH FT CPRHKRADMEEPTCIQKAQVLQNV" FT CDS 295..1065 FT /codon_start=1 FT /product="V1 protein" FT /note="coat protein" FT /db_xref="GOA:Q6R4D4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q6R4D4" FT /protein_id="ADE09282.1" FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK FT NRPAYRKPRFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(1062..1466) FT /codon_start=1 FT /product="C3 protein" FT /db_xref="GOA:D5KYY6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D5KYY6" FT /protein_id="ADE09284.1" FT /translation="MDLRTGELLTATQLESGVYIWTVKNPLYFKITKHLESPFQRNHDI FT ITLQIQFNHNLRKALGIHKCFLVCKIWTHLHPQTSRFLILFKYQCIKYLDRLGVISINN FT VIRAMSHVLYNVLEGTIDVIEEHDIKFNIY" FT CDS complement(1207..1611) FT /codon_start=1 FT /product="C2 protein" FT /db_xref="GOA:D5KYY7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D5KYY7" FT /protein_id="ADE09283.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRIAKRATRRRRVDLPCGCSYFVAIG FT CHNNGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQAPREPIPEEPRHNHVTNPVQPQP FT EESVGDTQMFSSLQNLDSFTSSDLAFLNII" FT CDS complement(1514..2599) FT /codon_start=1 FT /product="C1 protein" FT /note="replication-associated protein" FT /db_xref="GOA:D5KYY8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D5KYY8" FT /protein_id="ADE09281.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALTILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFNQVPEELKEWACNNVLSAAARPLRPIGIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNNVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIRNAIFVTLKGPL FT YSGSNQGATPNSQEGNQTTES" FT CDS complement(2149..2448) FT /codon_start=1 FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5JH97" FT /protein_id="ADE09286.1" FT /translation="MKMGLLTCMSSSNSKENSNVKIKDSSISHPQPGQHISIRTFRELK FT AQQMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSLY" XX SQ Sequence 2744 BP; 736 A; 540 C; 602 G; 865 T; 1 other; accggatggc cgcgattttt tttaaagtgg tccccttgat gtgatgtttc atccaattaa 60 aacgctcggc caaagcttaa ttatttatgg tcccctattt aagacttagt caccaagttt 120 cggcgaaatt caaaatgtgg gatccactcc taaacgaatt tccagaaaac gtccacggtt 180 tccgttgtat gttagcggtt aagtatctgc aagcggtcga gaagacgtat tcacctgata 240 ccctagggtt tgatctcatc cgtgatctca tcggtgtaat tcgtgcgaag aactatgtcg 300 aagcgtccag cagatattct catttccacg cccgtctcga aagtacgtcg ccgtctgaac 360 ttcgacagcc catacaacag ccgtgctgct gtccccactg tccgcgtcac aaaagggcag 420 atatggaaga accgacctgc atacagaaag cccaggttct acagaatgta tagaagtcct 480 gatgtcccta agggatgtga gggtccatgt aaagtgcaat ctttcgatgc gaagaacgac 540 attggtcata tgggcaaggt aatctgtctg tctgacgtta cccgtggtat tgggcttact 600 catcgagttg gcaagcgttt ctgtgtcaag tcactttatt ttgtcgggaa gatctggatg 660 gatgaaaata ttaaggttaa gaatcacact aataccgttt tattttggat agttagggat 720 cggcgtccta ctggaacgcc taatgatttt cagcaggtct ttaatgtata tgataatgaa 780 cccagcactg ctactgtaaa gaacgaccag cgtgatcgtt tccaggttat aaggaggttt 840 caggcaacgg tgactggtgg acaatatgca gctaaggagc aggcgattat tagaaagttt 900 tatcgtgtta ataattatgt agtttacaat caccaggaag ctgggaagta cgagaaccat 960 actgaaaatg ctttgttgtt gtatatggca tgtactcatg cctctaatcc tgtgtatgct 1020 actttgaaag tcaggagtta tttctatgac tcagtgacga attaataaat attaaatttt 1080 atatcgtgtt cttcaattac atcaattgtt ccttctaata cattgtacag tacatgagac 1140 attgccctaa ttacattatt tatactaatc acgcctaatc tatctaaata tttaatacat 1200 tgatatttaa ataatattaa gaaacgcgag gtctgaggat gtaaatgagt ccagattttg 1260 cagactagaa aacatttgtg tatccccaac gctttcctca ggttgtggtt gaactggatt 1320 tgtaacgtga ttatgtcgtg gttcctctgg aatgggctct ctaggtgctt ggttatcttg 1380 aaatataggg gatttttgac cgtccagata tacacgccac tctctaattg agttgcagtg 1440 agtagttccc cggtgcgtaa atccattatt gtgacatcct attgcgacga agtacgaaca 1500 tccacaaggt agatcaactc tccgtcgtct ggttgccctc ttggctattc ggtgttgcac 1560 cttgattgga acctgagtag agtgggcctt tgagggtgac gaagatcgca tttcttatag 1620 cccagtttct aagtgckgag ttcttttctt cttccaagta ctctttataa ctggagttgg 1680 gtccaggatt gcagagaaag atagtgggaa ttccgccttt aatttgaact ggctttccgt 1740 actttgtgtt tgattgccag tccctttggg cccccatgaa ttctttaaag tgttttagat 1800 agtgcggatc gacgtcatcg atgacgttgt accacacatt attattgtac acttttggac 1860 ttaaatctaa atggccacac agataattat gtggtcccaa tgacctagcc cacatcgtct 1920 tccccgttct gctatcaccc tcaattacta taccaatggg tctcaatggc cgcgcagcgg 1980 cactgagaac attattacaa gcccattctt taagttcttc tggaacttga ttaaaagaag 2040 aagaagaaaa tggagaaata tattcctcca ttggaggagt aaaaatccta tctaaattag 2100 aatttaaatt atgaaattgc aaaacaaaat ctttaggggc tttttccctc agtatagtga 2160 gggccgaagc tttggaccct gaattgattg cctcggcata tgcgtcgttg gcagattggc 2220 aacctcctct agccgatctt ccatcgatct ggaaaattcc atgatcaagc acgtctccgt 2280 ctttttccat gtatgtttta acatctgttg agcttttagc tccctgaatg ttcggatgga 2340 aatgtgctga cctggttggg gatgtgagat cgaagaatct ttgattttta cattggaatt 2400 ttccttcgaa ttggatgagg acatgcaggt gaggagtccc atcttcatgg agttccctgc 2460 agattctgat gaataattta ttagttggtg tttctagtgc ttgaatttgg gaaagtgctt 2520 cctctttagt gagagaacaa tgtgggtatg tcaggaaata gttcttggca tttattctga 2580 atttattagg aggagccatt gactggtcaa tcggtgtctc tcaaacttgg ctatgcaatc 2640 ggtgtctggg gtcttattta tacctggaca ccaaatggca taattgtaat ttagtaaatg 2700 tgatttaaaa ttcaaaatcc aaaagcggcc atccgtataa tatt 2744 //