Dbfetch
ID GU723711; SV 1; circular; genomic DNA; STD; VRL; 2742 BP. XX AC GU723711; XX DT 01-APR-2010 (Rel. 104, Created) DT 01-APR-2010 (Rel. 104, Last updated, Version 1) XX DE Tomato leaf curl Taiwan virus isolate 15-7 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Taiwan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2742 RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.; RT "Molecular diversity and pathogenicity of tomato-infecting begomoviruses in RT Taiwan"; RL Unpublished. XX RN [2] RP 1-2742 RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.; RT ; RL Submitted (08-FEB-2010) to the INSDC. RL Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, RL Tainan, Taiwan 74199, ROC XX DR MD5; 5797548a9e854e95f3884aa90f5518fa. XX FH Key Location/Qualifiers FH FT source 1..2742 FT /organism="Tomato leaf curl Taiwan virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="15-7" FT /mol_type="genomic DNA" FT /country="Taiwan:Shanhua, Tainan" FT /collection_date="2007" FT /db_xref="taxon:196093" FT CDS 133..474 FT /codon_start=1 FT /product="V2 protein" FT /db_xref="GOA:Q09M62" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q09M62" FT /protein_id="ADE09047.1" FT /translation="MWDPLLNDFPESVHGLRCMLAIKYLHLVENTYSPDTLGYDLIRDL FT ILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALV FT QKAQDVQDV" FT CDS 293..1066 FT /codon_start=1 FT /product="V1 protein" FT /note="coat protein" FT /db_xref="GOA:Q09M61" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q09M61" FT /protein_id="ADE09044.1" FT /translation="MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSW FT VNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDISHVGKVLCVSDVTRGNGLTH FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQIFNMYDNE FT PSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT CDS complement(1063..1467) FT /codon_start=1 FT /product="C3 protein" FT /db_xref="GOA:Q072S2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q072S2" FT /protein_id="ADE09046.1" FT /translation="MDSRTGELITAAQAENGVYTWTINNPLYFKITQHNQRPFLRNHDV FT TTIQVQFNYNLRKALGIHQCFIICQIWTRLQPRTSHFLRVFKYQCMKYLDNLGVISLNN FT VFRAMRHVLYNVIEGTIDAQFSHIIKFKIY" FT CDS complement(1208..1615) FT /codon_start=1 FT /product="C2 protein" FT /db_xref="GOA:Q09M59" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q09M59" FT /protein_id="ADE09045.1" FT /translation="MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGI FT NCASHGFSHRGTHHCSSSREWRVYLDNQQSPLFQNNTTQPETISTEPRRNDNTSSIQLQ FT PEESVGNTPVFYNLPDLDSFTTSDLAFLEGI" FT CDS complement(1515..2603) FT /codon_start=1 FT /product="C1 protein" FT /note="replication-associated protein" FT /db_xref="GOA:D5KYB0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D5KYB0" FT /protein_id="ADE09043.1" FT /translation="MPPPKRFLINAKNYFLTYPQCTLTKEEALSQIKNLTTPTNKLFIR FT VCRELHEDGTPHLHILIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFH FT NLNCNLDRIFAPPLEVYISPFNSSSFDQVPSELVEWVAENVRDSAARPWRPMSIVLEGE FT SRTGKTLWARSLGPHNYLCGHLDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPL FT YSRANQGPTQNSEEETNSQAEG" FT CDS complement(2153..2446) FT /codon_start=1 FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D5KYB1" FT /protein_id="ADE09048.1" FT /translation="MGLLICTFSSNSKANSNAKTTDSSTSHPQPGQHISIRTFRELRAQ FT QMSKPIWKKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2742 BP; 721 A; 541 C; 617 G; 863 T; 0 other; accggatggc cgcgattttt ttttagtggg tcctacgcac taatgttggt cggccaatag 60 aaacgctccc tcaaagctta ttaacaaaaa tacccgttat aaatacttgg tggctaagtt 120 acagtcggta aaatgtggga tccacttttg aatgattttc cggagtctgt acatggtcta 180 cggtgtatgc ttgccattaa gtatctacat cttgtagaaa atacatattc cccggatact 240 ttgggttacg atcttatacg tgatttgatt ttagttatcc gagctaggga ttatgtcgaa 300 gcgacccgcc gatatagtca tttccactcc cgcttccaag gttcgtcgcc gtctgaactt 360 cgccagccca tatggcaacc gtgtagctgc ccccactgtc ctcgtcacaa acaaaaagag 420 ttcatgggtg aatcggccct tgttcagaaa gcccaagatg tacaggatgt ataaaagccc 480 agatgttcct cgtggttgtg aaggcccatg taaggtacag tcatttgaac agcgtcatga 540 tatatcccat gtgggcaagg tattatgtgt gtccgatgtc acacgtggta atgggctgac 600 ccatcgtgtt gggaagaggt tttgtgttaa gtccatttat gtgttgggta agatatggat 660 ggatgagaat atcaagacga agaatcacac aaatactgtg atgttcttct tagtccgtga 720 tagaaggcct tatggtactc cacaagattt cggtcagatc tttaatatgt atgataatga 780 gcctagcact gcaacggtga agaatgataa tagagatagg tttcaagttc tccgtcgatt 840 ccaggctacg gtgactggcg gtcagtatgc gtgcaaagaa caagctctag ttaggaagtt 900 tatgaaaatc aacaaccatg ttacttataa tcaccaagag gctgctaaat acgataacca 960 tacagagaat gctttgttgt tgtatatggc atgtactcat gccagtaatc ctgtgtatgc 1020 tactttgaaa atcagaatct atttctatga ttctgttcaa aattaataaa ttttaaattt 1080 tattatatgt gaaaactgag catcgattgt gccctctatt acattgtata gtacatgtct 1140 cattgctcta aatacattgt ttaaactaat aacgcctaaa ttgtctaaat acttcataca 1200 ttggtactta aataccctca agaaatgcga ggtccgaggt tgtaaacgag tccaaatctg 1260 gcaaattata aaacactggt gtattcccaa cgctttcctc aggttgtagt tgaattgaac 1320 ttgtattgtc gttacgtcgt ggttccgtag aaatggtctc tggttgtgtt gtgttatttt 1380 gaaatagagg ggattgttga ttgtccaagt atacacgcca ttctctgctt gagctgcagt 1440 gatgagttcc cctgtgcgag aatccatgtg atgcgcagtt aattccaaga taatacgagc 1500 acccacaagg aagatcaacc ctccgcctgc gaattggtct cttcttcgct attttgtgtt 1560 ggaccttgat tggcacgtga gtagagtggc tcggtgaggg tgatgaattc cgcattcttt 1620 aaagcccagt ctttgagtgc gaaattcttt tcttcgtcta agtactcttt atatgatgat 1680 gttggccctg gattgcagag gaagattgtt gggataccac ctttaatttg aattggtttc 1740 ccgtatttgg tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt 1800 agatagtggg gatcgacgtc atcaatgacg ttgtaccatg cctcattgct gtagactctt 1860 gggcttaggt cgagatgacc acacaagtaa ttgtgtgggc ctagagacct ggcccaaagt 1920 gtcttccctg tacgactctc tccctctaac acaatactca tgggtctcca tggccgcgca 1980 gcggaatccc tcacgttctc ggcaacccat tctacaagtt cgcttggaac ttgatcaaat 2040 gaagaagaat taaaaggaga aatataaacc tccaacggag gtgcaaaaat cctatctaaa 2100 ttacaattta aattatgaaa ctgtaaaaca aaatctttgg gagctttctc ccttaatata 2160 ttgagggcct cagctttgga ccctgaattg attgcctcgg catatgcgtc gttggcagat 2220 tggcaacctc ctctagctga tcttccatcg acctggaaaa ttccatgatc aagcacgtct 2280 ccgtcttttt ccatataggt tttgacatct gttgagctct tagctccctg aatgttcgga 2340 tggaaatgtg ctgacctggt tggggatgtg aggtcgaaga atctgttgtt ttggcatttg 2400 aatttgcctt cgaattggat gagaatgtgc aaatgaggag tcccatcttc gtgcagttct 2460 ctgcaaaccc taatgaatag tttattcgtt ggggttgtta agttttttat ttgggaaagt 2520 gcctcttctt tggttagcgt acactgtgga tatgtgagga agtagttctt tgcatttatt 2580 aagaaacgtt tagggggagg catgttgact ttgtcaatcg ggtcttctca aactatccca 2640 tgcaatcggg gaatgggtcc ttatttatat gtgaggacct aaatggcatt aatgtaatta 2700 tttaaaattc caaaggggta aagcggccat ccgtttaata tt 2742 //