ID   GU723290; SV 1; linear; genomic RNA; STD; VRL; 972 BP.
XX
AC   GU723290;
XX
DT   25-MAR-2010 (Rel. 104, Created)
DT   26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE   Rice tungro spherical virus isolate Phil08 polyprotein gene, partial cds.
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KW   .
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OS   Rice tungro spherical virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Waikavirus.
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RN   [1]
RP   1-972
RX   DOI; 10.1016/j.jviromet.2010.09.004.
RX   PUBMED; 20837064.
RA   Le D.T., Netsu O., Uehara-Ichiki T., Shimizu T., Choi I.R., Omura T.,
RA   Sasaya T.;
RT   "Molecular detection of nine rice viruses by a reverse-transcription
RT   loop-mediated isothermal amplification assay";
RL   J. Virol. Methods 170(1-2):90-93(2010).
XX
RN   [2]
RP   1-972
RA   Le D.T., Sasaya T.;
RT   ;
RL   Submitted (07-FEB-2010) to the INSDC.
RL   Research Team for Vector-Borne Diseases, National Agriculture Research
RL   Center, Kannondai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
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DR   MD5; 298b24e95be3ee50adbd07d0e11fa4c9.
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FH   Key             Location/Qualifiers
FH
FT   source          1..972
FT                   /organism="Rice tungro spherical virus"
FT                   /host="Oryza sativa"
FT                   /isolate="Phil08"
FT                   /serotype="new"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines"
FT                   /collection_date="Nov-2008"
FT                   /PCR_primers="fwd_seq: gaytttggragaagcctawcrtg, rev_seq:
FT                   ctgggytgartccactatrtywg"
FT                   /db_xref="taxon:35287"
FT   CDS             <1..>972
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="RTSV CP3; contains coat protein 3"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D4PAR2"
FT                   /protein_id="ADD84686.1"
FT                   /translation="DFGRSLTCSRLLGNGFKEWCSQESLLMRVPLKNGKKRAFKYAVTP
FT                   RMRTQPPEATSLSWLSQIFVEWRGSLIYTIHVQSGSAIQHSYMRIWYDPNGKTDEKEIK
FT                   FLDSAHPPAGIKVYHWDLKIGDSFRFTVPYCARTEKLQIPKAYASTPYEWLTMYNGAVT
FT                   LDLRSGADMELFVSIAGGDDFEMFEQTVPPKCGSVSDSYTVLSYADDIKSVTEVPNKTT
FT                   YLADEQPTTSAPRVSTVDTEEDPPTEGEIARTTNGTLVQYRGGAWKPMVERAPMMSKKQ
FT                   VGPELEASDSHMYKCIKNMNKNVKILTDRQCTAKLANIVDSTQ"
XX
SQ   Sequence 972 BP; 281 A; 215 C; 248 G; 228 T; 0 other;
     gattttggga gaagcctaac gtgttcgcgt cttcttggca atgggtttaa ggaatggtgc        60
     tctcaagaat cgttgctaat gagggtccct ctgaaaaatg ggaagaaacg agccttcaag       120
     tatgctgtga ccccccggat gcggacacag cctcccgaag ccacaagtct tagctggttg       180
     agccaaatct ttgttgaatg gcgtggatct ttgatttata ctattcacgt tcaatctgga       240
     tccgctatcc aacactcgta catgcgcatt tggtatgatc ccaatggaaa aactgatgaa       300
     aaggagatca aatttcttga cagtgcgcat ccaccagcag gcattaaggt gtaccattgg       360
     gacctcaaaa ttggagatag ctttcgcttt actgtgccgt actgtgcaag aacagagaaa       420
     ttgcagatcc caaaggctta tgcgtctaca ccatatgagt ggctcacgat gtataatggg       480
     gcagtgacac ttgatttgcg tagcggtgcc gatatggagc tctttgtctc gatcgctggg       540
     ggagatgatt tcgagatgtt tgaacagacc gtgcctccga aatgtggctc agtgagtgac       600
     tcgtatactg ttctatcata cgcggatgac atcaagagcg tgacagaggt accaaacaag       660
     accacatact tggcggatga gcaaccaacg acctcagcac cccgtgtatc cactgtagac       720
     actgaggaag acccaccaac tgaaggggag attgcaagaa ccacgaatgg aaccctcgtg       780
     caatatcgtg gaggagcctg gaaaccgatg gtggaacgtg caccgatgat gtcaaagaag       840
     caagtaggcc cagagcttga ggcatcagat tcccacatgt acaagtgcat taaaaacatg       900
     aacaagaatg ttaagatttt gactgataga caatgcactg cgaaattggc aaacatagtg       960
     gactcaaccc ag                                                           972
//