ID GU722317; SV 1; linear; genomic RNA; STD; VRL; 9010 BP. XX AC GU722317; XX DT 02-MAR-2012 (Rel. 112, Created) DT 02-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Soybean vein necrosis virus isolate Milan_TN segment RNA 1, complete DE sequence. XX KW . XX OS Soybean vein necrosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Soybean vein necrosis orthotospovirus. XX RN [1] RP 1-9010 RA Tzanetakis I.E., Zhou J.N.; RT "Soybean vein necrosis virus: a new widespread virus in the United States"; RL Unpublished. XX RN [2] RP 1-9010 RA Tzanetakis I.E., Zhou J.N.; RT ; RL Submitted (05-FEB-2010) to the INSDC. RL Plant Pathology, University of Arkansas, Division of Agriculture, 495 N. RL Campus Dr. PTSC 217, Fayetteville, AR 72701, USA XX DR MD5; cea3f532a454936bc7a58e52b64b16d8. XX CC GenBank Accession Numbers GU722317-GU722319 represent the complete CC genome of Soybean vein necrosis virus isolate Milan_TN. XX FH Key Location/Qualifiers FH FT source 1..9010 FT /organism="Soybean vein necrosis virus" FT /segment="RNA 1" FT /host="soybean" FT /isolate="Milan_TN" FT /mol_type="genomic RNA" FT /country="USA" FT /collected_by="John Rupe" FT /collection_date="Sep-2008" FT /db_xref="taxon:980895" FT CDS complement(185..8980) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; L protein" FT /db_xref="GOA:F2Y3N3" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:F2Y3N3" FT /protein_id="ADX01591.1" FT /translation="MNDQTIITLVNFNNEILEKIKICRDRLNTYFESIKEPSKALDDLV FT GEALKRYKRMTDLIEKICEETEGLFEGTIYNHVKVEEYFNELIMNYIESELSRHDLFGK FT IVRNHLHFTPRDRDSCEMQDLLLEYLEQLTGKTSINNGFSSRNEFDRMVSELKFKSATP FT DNYCIAKDTKDGSLQLFIYDWKVSVDTQTEIKTMNNYYDNVYNTFKEATIDGQNFLKTC FT PIYVCIVVLKPLGVMPIVPTIMRVDGPFDKNVGKYFYSRKKVAEQSNICTMRQISQCKT FT GDGKSLREFFNSTQALKDVFFHKFSQEISSRDTHFSHWTKEYQNKTYSQNAFSKDIKTM FT IESMCNEEFNIKEIADMVGGSYTYFLSTMNEIHAKDKYSGYVDFCKLLGVAPRSSQESL FT MTSLQMKEEKWESTFETHLEKVKKRVKDSLQNEPVIESIDHSFEINARDYEEKYPGCFT FT SDLSQTKTNFSIPWCPSSEMEFKEGDFNNEIISSFRKDLQHRGKFVHHKPYISGNFDMN FT MNESIKELVLSCLLELSFDTSKLESESFEDVIDLNTGAIKVDRTSSSKQWIEREGKLTR FT NKNEFSSSNSSVEVKNKFTKGLKFMGVNYSKAKKVSKANEIKEKVKEGEYDVSRQIYKI FT DNLGRYTHNKKLIKFNDQEAISWTESISKSMYAMMCSDFRNPTKTKMVFDHYCQQPEEL FT YLYPDLVKTEMDTSKKLNILADKIGIYSYCDDMMQIAKGLKIADRFMGSSDFKIQTTSN FT TNIICLAFKGDGMNTGTAGVPYIILCRTDELLHKHFVQCYTKETMGYFRVPSGYIYIMK FT PQRLNQVRLLSLFKSPSKVPILFNQYCLKSREIRDWLINTDEYEINLFTCPGLIKSSLK FT NVMFSSVIIGTVTKLSRMGIFDFMRYAGFLPLSDYSKIKKYISEKFDPDITNVVDMFFV FT DGIRDLLVRMEDLNLSKKAVPITIDQENDMSGGIGELNIKCPVTKTTLRTLEDLYNNVY FT LAIYMMPKSLHTHVHNLTSLLNVSAEYELKFREKQGFNVDDEVVPDKKMFNDSGKFSID FT GMLNIASLFGYYRENIKNVAMMRSSIEAKEGFLGLPYKISTLKSSKKCSKATILTNSEV FT VETLKDVSVGDLDSLEGMKLYLMKGLVRSYKEDSASCTTYLKRILDEPSRVIDLVHRCT FT AGDLFPKYKTSFQKFYQTSHPATVEVYLKSKFSENNMTVLKSKKVSEELYDIIKEYNKI FT HDVSIEELDRLGRGNEGSKSSFMSLLEYTVSKIIHNCSTQEFLVSVFEKMQRTKMDREI FT YLMSMKTKMMLYFIEHTYKHIAQNDPNEAISISGDYKIRTLASLSLDTITSYKTALMDD FT ENSKIAFLSSDQSKWSASDLTYKYILAVMMNPVLTTGEANLMVECLSLYIKMKKVCIPT FT DIFLNLRKSQDQYCLNTTPLGLLTKGLSTNCYPVTMNWLQGNLNYLSSVYHSCAMYGYK FT QMLSKIKDASFQTRWMVHSDDNATSLVASGDIENVMSDFSCETFPQFLFETVTAHFTSY FT SITPSKKSYCSESEVEFISERIVNGAVIPLYCRHLANLCTESSHLSYFDDLMSLSTHLT FT MLLRKGCPNELIPASYASVQMQASGIYSMLPGEVNNIHTISESVQFPLTKKEIPTCMGG FT WLSLKVEYMASLGPSANDEMIYYNVLKSFFGSSDFKSFHADIIEGNKLDRIAKEFDTRV FT KRGNTNGLDEKLIALINIFNSCLQTEDVDSLEIGMKFQSMVGQIIKLPQYVNENAISNY FT SSYKDFCKLYPNLKKNEWLLQSTKMIESDELNLDVTREELARMDLGSMVTNMIDRPETF FT LIAPICDRDFLYNQIFIYSSISKRNQLSTQATEKLALDRILRSKAKSFISAVDKTKKTY FT SEILKEKMALSLTSGFDSARSIRFLADIISKDLNFSIVESIASKLTPTNSTPKSNFNFR FT FCMTEKLPPIIEGSPGLLIINHFYGSEYLESLGLKNMPLTSDSINLMITTYGKADTIND FT VMKFVQSRSLDWIYKTEEFKKQDLIGITLLCVNSMTVCQNKLMKLSGCLNRKNFPFYAK FT FNLGRTFVSNILSLISTIYSRENTIYFYASISLNIHRGDRLLLNMDRDLSLEKMIDLMV FT YVSDKLQAIFPDITIDQMKEVMKMLTHNGFVLNDRLEANLVKINTELETFKTRNNTRLT FT FHTLLVSMSKHAPWLFNMGYIKQPVFEFVLDSTRNYEVTYIKSEKQDSKGNYIADDVYK FT IGMITESCYSQLVMDGNRIDIAIWSPYEYYNENEGIYVHYRIVAEKILSKLIVDKTESL FT KSLYSQSVVLETGGACISASSRGKLYAKFNNTSRSLTVNDVKSMVHVKFYQIDFKTWDL FT QKIQTSYKLRQPYPRECFSNVYKELETDESSTEIMLKRFQSGLPLMAELRDLSRIIYEI FT EDEDYRDALMGYLERLEHFCLEGMRKCKGVDEYEQYLKSHGLNEMDDFCYQMAMDAGEE FT FAERLERIHGIYQNFHEGLGKFKGACIYFKYSLINDSRGLRIGKPSGHGMNGLSCIKPI FT ISENYNLLELLKLIKACETCHNNDSTLNLKIFKGIQNRNFYAKPAKLDLGLALDLNNDV FT MLNSYDYKTLVLGDLKLDERAIRLLTENGFDIAGEVMKIKVEDNLAEFTKGKEKKMEIG FT ESKESELYDEIIRKTNIVKKKPGHLIPSNTLLMGEFIKFIMKSVNGNTYDLMDLLRTGF FT DPSETDLDRVTIIKKNISSLTTAGRILKEIKKEDNPLEEIAECFECFLKITKGVTVQRE FT VFTNVRSLMNAISGLESKTEKIKTLTNLIDYLNLNPVCLNDSCLYGVYTAENLQIYMSK FT AKEVIISKINKLSDTYDPNPENELRELLSGKAKEVLNDARSSGFDYSTQKNNPAEIEAG FT KFTESETESDEDEEEGGVVQLETSSSGSKAKWSKPKKKKKPKAKPKKSKKKHNK" XX SQ Sequence 9010 BP; 2613 A; 1713 C; 1395 G; 3289 T; 0 other; agagcatttg agcaataaca tttcaatcta tgaattattt aacttgagta aaaaatttgt 60 aactatctat gaaactaact tattatatct atatatttta aacaatttta aaaatctaaa 120 acacctgatc acaattgaac aactttgttg atttagttag agcattttaa ctggttccat 180 tgagttactt gttgtgtttc ttctttgatt tttttggttt tgcttttggt ttcttcttct 240 tttttggttt tgaccattta gctttcgaac cacttgaact agtttctaac tgaactactc 300 caccctcttc ttcatcctca tcagattctg tttcagattc tgtaaactta ccagcttcta 360 tttctgcagg attgttcttc tgagttgaat aatcaaatcc actagatcta gcatcattca 420 aaacttcttt agctttgcct gaaagaagtt ctctaagctc attttctgga ttcggatcat 480 aagtgtcaga aagtttattt atttttgata ttataacttc tttagctttt gacatgtaaa 540 tctggagatt ttcagctgta taaactccat acaaacaact atcattcaaa caaacagggt 600 tcaaattgag ataatcaatc aaatttgtca gagttttgat cttttcagtt ttgctctcta 660 aaccgcttat agcattcatc aagctacgca catttgtgaa aacttctctc tgaacagtta 720 cacctttagt tatcttcaaa aagcattcaa agcattctgc tatttcttca agtgggttat 780 cttctttttt gatttctttt aggattctcc cagctgttgt taaagatgat atattctttt 840 ttatgattgt cactctatcc aaatcagtct cagatggatc gaatccagtt cttagtaaat 900 ccatcagatc gtatgtgttt ccattaactg atttcattat aaattttata aattctccca 960 ttagtagggt gttagatgga atcagatgtc ctggcttttt cttcactata tttgttttcc 1020 ttattatttc atcatacaac tctgattctt tgctttcccc aatctccatt ttcttttctt 1080 ttcccttagt gaattctgct aggttgtcct ctactttaat tttcattact tcaccagcta 1140 tatcaaaccc attttctgtc aataatctta ttgcccgttc atctaatttc agatctccta 1200 gaactagggt tttgtaatca tagctattca acatcacatc attgttcaaa tcaagagcca 1260 gtcctagatc taattttgct ggcttagcat agaagttccg gttctggatt cctttaaata 1320 tcttcaagtt caaagtggaa tcattattat ggcatgtctc acaggctttt attaatttca 1380 atagctctag cagattgtag ttctctgata tgattggttt gatgcaactt aacccgttca 1440 ttccatgacc tgagggcttg ccaatgcgca atccacgtga atcattaatt aaactgtatt 1500 taaagtaaat acacgctccc ttaaatttcc cgaggccttc atggaagttt tggtatattc 1560 cgtggattct ttctaatctt tctgcgaatt cttctcctgc gtccatagcc atttgatagc 1620 agaaatcatc catttcattc aagccatggc tttttaagta ctgctcatac tcatcaaccc 1680 ctttgcattt tctcatacct tctaagcaaa agtgctctag cctttccaga taacccatca 1740 aggcatctct ataatcttca tcttctatct catagattat tctactcaaa tctcttagct 1800 ctgccattaa aggtagtcca gattgaaacc tctttagcat tatctctgtg ctgctttcat 1860 cagtttctag ttctttgtac acattagaga agcattcacg aggataaggt tgccttaatt 1920 tgtagctggt ttgtatcttt tgaagatccc atgttttgaa atctatttga taaaatttca 1980 catgaaccat tgatttaaca tcattgacag tgaggcttct acttgtgttg ttgaacttag 2040 catacagttt gcctctagaa gatgcactta tgcatgcacc tcctgtttcc agaacaacag 2100 attgtgagta caagcttttt agactttcag ttttgtccac aatcagtttg ctcaaaatct 2160 tttctgcaac aattctataa tggacatata tcccttcatt ttcgttgtaa tattcgtaag 2220 gagaccagat agctatatca attctgttgc catccatgac aagttgggag taacagctct 2280 ctgtgatcat accgattttg tatacatcat cagcaatgta attccctttt gaatcttgtt 2340 tttctgactt aatgtatgta acttcataat ttctagtaga gtccaagaca aattcaaaaa 2400 caggttgttt tatgtaaccc atgttgaata accatggtgc atgtttgctc atggaaacta 2460 gtaaagtgtg gaaagtcagt ctggtattgt ttcttgtttt gaatgtttct agctctgtat 2520 tgatttttac caagttagct tccagtctgt cattcaacac aaatccgttg tgtgtcaaca 2580 ttttcattac ttctttcatt tgatcaatag tgatatcagg gaaaattgct tgcagcttat 2640 cagaaacata aaccatcaaa tcaatcatct tttccaaaga aagatctcta tccatgttca 2700 aaagcaacct atcacctctg tgaatattta atgatatact agcatagaag taaattgtgt 2760 tctccctgct gtaaatagta gaaatcaaac tcagtatgtt tgaaacaaag gtccttccta 2820 agttgaattt agcataaaag gggaaatttt ttcggttcaa acacccactc aatttcatta 2880 gtttgttttg acaaactgtc atagaattaa cacacaacaa ggtgattcct atcaaatcct 2940 gttttttaaa ttcttcagtc ttgtaaatcc aatcgagtga tctagactgt acaaatttca 3000 ttacatcatt gatagtgtct gctttgccat aagtagtaat cattaagttt attgagtcac 3060 ttgttagagg catgtttttc aaacccaatg attccaagta ttcagaacca taaaaatgat 3120 tgattattag caaccctggt gacccttcta tgataggagg cagcttttct gtcatacaga 3180 atctgaagtt gaaatttgat tttggtgtcg agtttgttgg ggtaagcttc gatgctatag 3240 attccactat agagaaattc aaatccttag atataatatc agcaaggaat ctaattgatc 3300 ttgctgaatc aaacccactt gtaagtgaca aagccatctt ctccttcaaa atctctgagt 3360 atgtcttttt tgttttatct acagcactta taaagctttt ggctttagat cttaaaattc 3420 tatccaaagc caacttttct gttgcttgag tggacaattg atttctctta cttatgctgc 3480 tatagatgaa tatttgatta tacagaaaat ctctatcaca aattggtgct atcaggaacg 3540 tttctggcct gtcaatcatg tttgtaacca ttgagcccaa atccatccta gctagctcct 3600 ccctggttac atccaaattt aattcatctg attctatcat ttttgtggac tggaggagcc 3660 actcattttt cttcaaatta ggatatagct tgcaaaaatc tttgtatgat gagtaattgg 3720 aaatggcatt ttcattcaca tattggggta atttgattat ttggccaacc atgctttgaa 3780 acttcattcc tatctctagg ctatcaacat cttcagtttg taagcaagaa ttgaatatat 3840 ttattagagc tatcaatttt tcatccaaac catttgtgtt gcctctctta actcttgtgt 3900 caaactcttt tgcaattcga tccaatttat tcccttctat aatatcagca tggaaagact 3960 tgaaatcaga tgaaccaaaa aaacttttta acacattata atagatcatt tcatcatttg 4020 cagaaggacc caatgaagcc atatactcaa ctttcagact tagccatccc cccatgcatg 4080 taggtatttc tttctttgtc aaagggaatt gaactgattc cgagatcgtg tggatattat 4140 tcacttcacc tggaagcata gaatatattc cgctagcttg catttggaca gaagcataac 4200 tagctggtat cagttcattt ggacaacctt ttcttaacag catagttaag tgagttgata 4260 atgacatcag atcatcaaaa taactcaaat gtgaagattc tgtgcacaaa ttggccagat 4320 gtctacagta caatggtatg actgcaccat taactattct ctcagaaatg aactcaacct 4380 ctgattctga acaatagctt tttttactag gtgtaatgga atagctagta aagtgggcag 4440 tcacagtttc aaagagaaac tgaggaaatg tttcacatga gaaatcagac atcacatttt 4500 caatatctcc agaagcaact aatgatgttg cattgtcatc agaatgaacc atccacctag 4560 tttgaaagct agcatccttt attttagata acatttgttt ataaccatac atggcacaag 4620 aatgataaac agaagataaa taatttagat tgccctggag ccaattcata gttacagggt 4680 aacaattggt tgatagacct ttggtcaaca agcctaaagg tgttgtattc aagcagtact 4740 ggtcttggct tttccttaga tttaaaaata tgtctgttgg aatgcaaact tttttcattt 4800 tgatgtacaa agacaggcat tctaccatca agtttgcttc tccagtagtc aaaacagggt 4860 tcatcataac tgctaatata tacttgtaag tcagatctga agcagaccac ttggattgat 4920 cagaagataa aaatgcaatt ttagaattct catcatccat taaagcagtt ttgtaagatg 4980 ttattgtgtc taaagacaaa gaagcaagtg ttcttatttt ataatctccg cttatggata 5040 tagcttcatt gggatcattc tgagcaatat gcttatatgt atgctcaatg aagtagagca 5100 tcattttagt cttcatgctc atcagataaa tctctctgtc catctttgtt ctttgcatct 5160 tttcaaagac tgagaccaag aactcttgag tagagcaatt gtgtatgatt ttagatacag 5220 tgtattctaa aagagacata aaggatgatt ttgaaccctc attccctctg cctaatctat 5280 ctaattcttc aatactcaca tcatgaatct tgttgtattc tttgattata tcgtaaagtt 5340 cctcagacac tttttttgac tttaatacag tcatgttgtt ctctgagaat tttgatttca 5400 aatacacttc tactgtagct gggtgacttg tttgatagaa tttttgaaag ctggttttgt 5460 acttcgggaa caagtctcca gctgtgcatc tatgaactag gtcaatgact cgtgaaggtt 5520 catctaggat cctttttaaa taagttgtac agctggcaga atcctctttg tatgatctaa 5580 ctagtccttt catcagatag agtttcatgc cttcaagact atccaaatct cctacagata 5640 cgtcctttaa tgtttcaacg acttctgagt tcgttaaaat ggtagctttt gagcattttt 5700 tggatgattt gagtgtactt atcttatatg gtaaacctaa aaacccttct ttagcttcta 5760 tggaacttct catcatagca acattcttta tgttctctct ataatagcca aacaaggaag 5820 ctatgttcag cattccatct atcgaaaatt tgccagagtc attgaacatt tttttatctg 5880 gaacaacttc atcgtccacg ttaaagcctt gcttttctcg gaattttaat tcatattcag 5940 cagaaacatt taacaagcta gtcagattgt ggacatgtgt atgtagagat ttaggcatca 6000 tgtagatggc aagataaaca ttgttgtata aatcctccaa agttctcaaa gtagtttttg 6060 taacagggca ctttatgttt aattcaccaa tgccccctga catgtcattt tcttgatcaa 6120 ttgttatggg tacagctttt ttgcttaaat ttaaatcttc cattcttacc agcagatccc 6180 tgatcccatc aacaaagaac atgtctacaa cattggttat atcaggatca aacttctctg 6240 agatgtactt tttgatttta gaataatcag acaaagggag gaatccggca tatctcataa 6300 aatcgaatat gcccattcga cttagctttg tcactgtacc tataataact gatgaaaaca 6360 tgacattttt taaggaagat ttgatcaatc ctgggcaagt gaatagattg atttcatatt 6420 catctgtgtt tatcaaccaa tctcttattt ctcttgattt caaacagtac tgattgaata 6480 ggatcggcac tttgcttgga gacttgaaca agctaagcaa tctaacctga ttcagcctct 6540 gaggtttcat tatgtaaata tacccgctag gtactctgaa gtaacccata gtttctttag 6600 tgtaacattg cacaaaatgt ttgtgaagca attcatcagt tctgcacaag attatatatg 6660 gcactcctgc agttccagta ttcatcccat cacctttaaa agctaagcaa ataatgtttg 6720 tgtttgatgt ggtttgaatt ttaaagtctg aagagcccat aaacctgtct gcaattttaa 6780 gacctttagc aatttgcatc atgtcatcgc aataagaata aatccctatt ttatcagcta 6840 aaatgtttaa cttttttgaa gtatccatct ctgtctttac caaatctgga tataagtata 6900 actcttcagg ttgctggcaa taatgatcaa agaccatttt agtctttgtt gggtttctaa 6960 aatctgaaca catcatggca tacattgatt tactaataga ttctgtccat gaaatagctt 7020 cttggtcatt gaattttatt aattttttat tatgggtgta tctaccgagg ttgtcgatct 7080 tgtatatctg tcgtgaaaca tcatactcac cttctttaac tttctctttt atttcattgg 7140 ctttgcttac ttttttagct ttgctgtaat taacacccat gaacttcaaa ccctttgtga 7200 acttgttctt aacctcaact gaagagttac tagaagaaaa ctcatttttg tttcttgtca 7260 gtttaccttc tctttcaatc cactgtttag aagagctagt tcgatctact ttgatagctc 7320 ctgtattcaa atcaatgaca tcttcaaagg attcagattc aagtttgctg gtatcaaaag 7380 ataactccaa tagacaagac aaaactaatt cttttataga ttcattcatg ttcatatcaa 7440 aatttcctga gatgtaaggt ttgtgatgaa caaatttacc tctatgctgc aagtcttttc 7500 tgaagctgga gataatctca ttgttgaaat caccttcttt aaattccatc tcacttgatg 7560 ggcaccatgg tatggagaaa ttggtttttg tttgagaaag atcagatgta aaacaaccag 7620 gatacttttc ttcgtaatct cttgcattga tttcgaagga atggtctatg ctctctataa 7680 ctggttcatt ctgtaatgaa tctttcactc gtttttttac tttctccaaa tgagtttcaa 7740 aagttgattc ccacttttct tctttcattt gtagagatgt catcagagat tcctgagaac 7800 ttctaggtgc tacacccaag agtttgcaga aatccacata accagaatac ttatctttag 7860 catgtatctc attcattgta gaaagaaaat atgtgtaaga tcctcccacc atgtcagcaa 7920 tctcttttat attgaattcc tcattgcaca tagactcaat catagtttta atatcctttg 7980 aaaatgcatt ctgtgagtaa gttttgtttt ggtattcctt agtccaatga ctaaaatgtg 8040 tgtctctaga actaatttct tgagaaaatt tgtggaagaa aacatctttc agcgcctgag 8100 tgctgttaaa aaattccctc aggcttttcc cgtctcctgt tttgcattgg gatatttgcc 8160 tcatggtaca tatgttgctc tgctctgcaa ctttctttct tgaataaaag tatttgccaa 8220 catttttgtc aaaaggccca tcaactctca ttatggtagg cacaattggc attacaccca 8280 aaggtttcaa aaccactatg caaacatata taggacaagt tttcagaaaa ttttgaccat 8340 caatggttgc ttctttgaaa gtgttgtaca cattatcgta ataattgttc attgttttta 8400 tttctgtttg agtgtccaca gaaactttcc aatcatatat aaaaagttgg agactgccat 8460 cctttgtgtc cttagcaata caataattgt ctggagttgc agatttgaat ttaagttctg 8520 aaaccattcg atcaaattca tttctactgc tgaagccatt atttatgctt gttttccctg 8580 tgagttgttc aaggtactca aggagtagat cctgcatctc acagctgtcc ctgtccctag 8640 gagtgaaatg aagatggttt ctcacaattt taccaaacaa atcatgcctg gataactcag 8700 attcaatgta gttcattatc aattcattga agtattcttc aactttaaca tggttgtaga 8760 ttgttccttc aaataaccct tctgtttctt cgcaaatctt ttcaatcaag tcagtcatgc 8820 gcttgtatct cttcaatgct tcaccaacca aatcatcaag tgcttttgag ggttctttaa 8880 tgctctcaaa atatgtgtta agcctatctc tgcagatttt tattttctct aatatctcat 8940 tattgaaatt cactagtgta ataatcgtct ggtcgttcat tttgattttt agttattgct 9000 caaatgctct 9010 //