ID   GU574210; SV 1; linear; genomic DNA; STD; VRL; 1177 BP.
XX
AC   GU574210;
XX
DT   24-MAR-2010 (Rel. 104, Created)
DT   05-APR-2013 (Rel. 116, Last updated, Version 4)
XX
DE   Jatropha mosaic India virus isolate Lucknow coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1177
RA   Baghel G., Naqvi Q.A., Snehi S.K., Raj S.K.;
RT   "Molecular identification of three isolates of Jatropha mosaic India virus
RT   associated with mosaic disease of Withania somnifera in India";
RL   Arch. Phytopathol. Pflanzenschutz 45(17):2114-2119(2012).
XX
RN   [2]
RP   1-1177
RA   Raj S.K., Snehi S.K., Khan M.S., Baghel G., Naqvi Q.A.;
RT   ;
RL   Submitted (27-JAN-2010) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U.P. 226001, India
XX
DR   MD5; a7176801f16ea3ee325b59b31479aee7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1177
FT                   /organism="Jatropha mosaic India virus"
FT                   /segment="DNA A"
FT                   /host="Withania somnifera"
FT                   /strain="SKS-W"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="S. K. Snehi"
FT                   /collection_date="Dec-2009"
FT                   /identified_by="S. K. Raj"
FT                   /db_xref="taxon:1034067"
FT   gene            <1..357
FT                   /gene="AV1"
FT   CDS             <1..357
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="involved in virion encapsidation"
FT                   /db_xref="GOA:D4P593"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D4P593"
FT                   /protein_id="ADD82903.1"
FT                   /translation="LVRDRRPVDKPQEFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT                   STVTGGQYPSKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYA
FT                   TLNKRIYFYDSVSN"
FT   gene            complement(352..758)
FT                   /gene="AC3"
FT   CDS             complement(354..758)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="AC3; REn; increases viral replication"
FT                   /db_xref="GOA:D4P594"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D4P594"
FT                   /protein_id="ADD82904.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRSNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT                   VVRAVEHVLYSVLTGTDSMEQSNLIKFKIY"
FT   gene            complement(499..906)
FT                   /gene="AC2"
FT   CDS             complement(499..906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /note="AC2; TrAP"
FT                   /db_xref="GOA:D4P595"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D4P595"
FT                   /protein_id="ADD82905.1"
FT                   /translation="MRPSSPSTGHSTPVPIKVQHRAAKRRAIRRRRVDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT   gene            complement(834..>1177)
FT                   /gene="AC1"
FT   CDS             complement(836..>1177)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /note="AC1; Rep; involved in virus replication"
FT                   /db_xref="GOA:D4P596"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:D4P596"
FT                   /protein_id="ADD82906.1"
FT                   /translation="LCGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSN
FT                   TKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSS
FT                   ADQGSTQGS"
XX
SQ   Sequence 1177 BP; 282 A; 273 C; 293 G; 329 T; 0 other;
     ctcgtcaggg atcgtaggcc cgtggacaaa ccccaggaat ttggtgaggt gttcaacatg        60
     ttcgataacg agcccagtac tgctacggtt aaaaacatgt accgtgatcg gtaccaggtg       120
     ttaaggaagt ggagttccac tgtcactggt ggtcagtatc ccagcaaaga gcaggcaata       180
     gttaggcgtt tttttagggt taataattat gttgtgtata atcagcaaga ggctggtaag       240
     tacgaaaacc atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac       300
     cccgtgtatg ctacgcttaa taaacggatc tacttctacg attccgtatc caattaataa       360
     attttaaatt taattaaatt tgactgctcc atactgtcag tccctgtgag tacactgtac       420
     aatacatgct ctacggctct aacgaccgta tttatacata tgacccctaa catgtccagg       480
     tatctgagta cctggtacct aaaaaccctc aagaaacgca aggtctgagg ccgtaaggtc       540
     gtccagattt tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg       600
     ttggaccgta tctggacggt tattatgtcg tgttccatca ggaacggccg gctgctgtgg       660
     tctatgatct tgaaatagag gggatttgga acctcccagg tatagacgcc attcatcgcc       720
     tgagctgcag tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgcac       780
     gtagtacgag cacccgcagt tgaggtctac tctccgtcgc cggatggccc tacgcttagc       840
     tgccctgtgt tgaaccttga tcggcactgg agtagagtgg cccgtcgagg gagatgaagg       900
     tcgcatttct tattgcccaa gccttcaatg ccgtattctt cggctcgtca aggaactctt       960
     tatagctgga attgggccca ggattgcaca ggaagatagt gggtatccca cctttaattt      1020
     gaactggctt tccgtatttg gtgttgcttt gccagtccct ctgggccccc atgaattcct      1080
     tgaagtgctt taggtagtgg ggatctacgt catcaatgac gttgtaccac gcgtcgtttc      1140
     tgtagaccct aggactcaag tccagatggc cacatag                               1177
//