ID GU570008; SV 1; linear; genomic RNA; STD; VRL; 5773 BP. XX AC GU570008; XX DT 25-MAR-2010 (Rel. 104, Created) DT 24-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate Haw73-6110, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5773 RX DOI; 10.1007/s10658-010-9703-0. RX AGRICOLA; IND44488578. RA ElSayed A.I., Weig A.R., Komor E.; RT "Molecular characterization of Hawaiian Sugarcane yellow leaf virus RT genotypes and their phylogenetic relationship to strains from other RT sugarcane-growing countries"; RL Eur. J. Plant Pathol. 129(3):399-412(2011). XX RN [2] RP 1-5773 RA Elsayed A.I., Weig A.R., Komor E.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Plant Physiology, Bayreuth University, Universitaetsstr. 30, Bayreuth RL 95440, Germany XX DR MD5; d26292c376eccf4bc698fef1abadf721. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5773 FT /organism="Sugarcane yellow leaf virus" FT /lab_host="Saccharum hybrid cultivar H73-6110" FT /isolate="Haw73-6110" FT /mol_type="genomic RNA" FT /country="Germany" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 34..804 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:D4P4W4" FT /protein_id="ADD84813.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVHDYYGPNTPVYNWLEHXRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQNVARLQBILERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDDDDSGLETDFNN FT LSLGRPYINGLPPNEKIIFIHSNLVGYGPSSHDI" FT CDS join(209..2110,2110..3372) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:D4P4W5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D4P4W5" FT /protein_id="ADD84815.1" FT /translation="MAPTLPFTTGWSXYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAQNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVXFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVXDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANXPPPXKPVENAXXKPTPDQGNEPSGADHLKTPESTPLKQDESTKELLN FT NIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHINGKSP FT PATSQGSGNAVNSPRYTIPQNRRAHNGESASSQNTQKWRPKSPVSGGPPSAPKPRRQVL FT RLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCKTNAPHTSSSGSLIWSDFLKDFK FT EAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPE FT QLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALW FT RAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWM FT LEDDMEVRXFLTINNNELTRRLRACWLKCITNSVICTSGGXLYAQTHPGVQKSGXYNTS FT SSNSRIRVMAAFHCGADWAIXMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFER FT EDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLV FT PGAATK" FT CDS 209..2113 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:D4P4W6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D4P4W6" FT /protein_id="ADD84814.1" FT /translation="MAPTLPFTTGWSXYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAQNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVXFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVXDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANXPPPXKPVENAXXKPTPDQGNEPSGADHLKTPESTPLKQDESTKELLN FT NIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHINGKSP FT PATSQGSGNAVNSPRYTIPQNRRAHNGESASSQNTQKWRPKSPVSGGPPSAPKPRRQV" FT CDS 3567..5597 FT /codon_start=1 FT /transl_except=(pos:4155..4157,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5" FT /db_xref="GOA:D4P4W7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4P4W7" FT /protein_id="ADD84818.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVXDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVXDAPPTPTPIPTPPAPTPAPASKY FT LGYQGVPSNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYK FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPRQGYFSLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTAAMSARLPTQVSAPSEVYTPETPE FT QPTDEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRAASPPPXTTEVPVLGAXDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLRALPE FT ATREQRREYEHLKNSRGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3567..4157 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:D4P4W8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4P4W8" FT /protein_id="ADD84816.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVXDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3598..4050 FT /codon_start=1 FT /product="putative movement protein p17" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:D4P4W9" FT /protein_id="ADD84817.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLXISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5773 BP; 1534 A; 1504 C; 1371 G; 1331 T; 33 other; tttggaccaa gcctctgact tgtaaactgc tctatgcttt tcaacgaatt ctctgttgag 60 ggaattaaat tcagagcaca cgaaagcact tcacctgtct ttcgtgggga ggtttccagg 120 tgtttgactt actacagagt cttcgcctgt aagtgggttg agttgaccta tcaagatcca 180 ctcacacgcc atttagtaca cgattactat ggccccaaca ctcccgttta caactggctg 240 gagcayrtac gccttattgt tgtcactatg gtgcctattc tgctcctgcc agacacaacc 300 attggacggc acatccatat taagagacag tacctccagt ctgtcctttt atggcttgcc 360 cgcaacaaac tctactatag agttaagaga tgccgttcca agcggtttgt actcgagcaa 420 gatcacatcg gcccagaact tttccgaact cagctactcc agtatgctgg gttggatgtt 480 tttcaaaatg tggctcgatt gcaaracatt ctcgagagag gctacgacac tttccgatcg 540 gttcttggag tacaccttct cgaacacgaa aggtttgtta gtcgrattct tgaacaacct 600 attatggaac ctgatcaagc tgtacgttta tgctttcact atcataacac gcttgatcat 660 gacgatgacg attctggcct ggaaaccgat tttaataatc tgtctcttgg tcgtccttac 720 atcaatggtc taccacctaa tgagaaaatt attttcattc attcaaattt ggtgggttat 780 ggcccctctt ctcatgatat ataggaccgt catgtggatt cacagaaggt tgttcgcttc 840 acgtggggac gagaaaatgg tccaaggttt caaaagtttt gccgtcccca tgtcaccacc 900 aggacactca gtgcttgaga tagtacaccc tgatgattct cacatgggat atgcatcctg 960 tgttcgattg aaaaacgggg aagaggctct catgacatcc gttcactgca taagcgattc 1020 tttcaaagtt cgctcgttca ggaatggtat caagatccct ctaacggaat tccaagtgct 1080 gttgcccgcc aatgtgatrg atattgttct tcttcgaggc ccacccgagt ggaaatccat 1140 ccttggagcc aaagcagccc atttcactcc agtcaaccag ctcaacaaag gagctgtgtc 1200 tttcttcatt ttcgataagg agtggatgat gcacaatgca aagattacag gaactgatgg 1260 tttttatgcc acagttctta gtaacactga gaagggctac agtggcgccc cctactggaa 1320 cgggaaatct atagtagggg tgcataaagg gcatgtgtac ggagacgatt ccaagaatta 1380 caatcttatg tcgccgattc cccctgtcaa ggggttaacg gcgcctaatt ttgtgtatga 1440 atctccgtct ctacaaggag atgtcttyag cgacgccgac gtttcagaca ttgcygatta 1500 cgccgaggag gtgtatgaga aaacccttgc agagccyaaa gtgtggaaac ccgccagcgg 1560 caaatactgg tgggagatgg ccgaagaaga ggatgatttt gtcgttgagg caaattmacc 1620 tccccctgry aaacctgttg agaacgcnnn nnnyaagccg actccagacc agggaaacga 1680 gccaagtggc gccgaccact taaaaacacc ggaatccacc ccgctcaagc aagacgaatc 1740 tacaaaagag ttgctcaaca acatcgtctc gcagttgatt caaaagatcg acctgagctc 1800 cattgcaacg agggtggagg agaaactgct gcgtcaagcc cagaacaaac agcagcagaa 1860 cggagggaag aagtcaccca gaaaacgcaa gacctcgaac acttcttcca agccgcatat 1920 aaatgggaag agtccaccag cgacatccca gggttcagga aatgcggtaa actccccgcg 1980 ctataccatc ccccaaaacc gaagagcaca caatggggag agcgcatcat ctcagaacac 2040 ccagaaatgg cgtccaaagt cgccggtttc gggtggccct ccttcggcgc ccaagccgag 2100 gagacaagtc tgagactcca agcggcacgc tggcttaaac gagctgagtc agcggagaag 2160 ccgacagaaa aacaacgcaa gctcgtcatt gatcgtgtgg ttaaggcata tgaaccgtgt 2220 aaaaccaatg ccccacacac cagctcctct ggcagcctca tctggtccga cttcttgaaa 2280 gatttcaagg aggctgtcaa ctcactagaa ctcgacgcag gaataggtct cccatacaaa 2340 cttcttcaca aagacaccca tcgtcaaatg gttgaagacc ccaaattcct gccgctcctg 2400 acgcgattga cctggaaccg tttacagaag atgtcccagg ttgatttcca ggagatgact 2460 cctgaacaac tagtgagaga aggattgtgc gatccgattc gtttgttcgt caaaggagaa 2520 ccgcacaagc aggcgaagct tgatgaaggg cgctaccgcc tcatcatgtc agtctcgctg 2580 gtagatcaac tggtagcccg ggttttgtty caagcacaaa acaaaagaga gatagctttg 2640 tggagagcta tcccttcaaa gcccggtttt ggcttatcca cagacaggga agcacgcgaa 2700 ttcatcgaat ccctgtccaa gacagtaggg tgttccccag cagaagtcat tcatggctgg 2760 agggacaaga tcgtacccac cgactgttcc ggttttgact ggtcagtcgc cgactggatg 2820 ctcgaagacg acatggaagt gagaartttt ctcactatca ataacaacga gctaacccgc 2880 cgcctcagag cgtgctggtt gaagtgcatc acaaactctg tgatttgcac gtccggcggt 2940 gycttgtacg cccaaactca tcctggggtg caaaaatctg gaycttacaa cacgagttca 3000 tccaattcca ggattcgagt aatggctgct tttcattgcg gcgcagattg ggcgatarcc 3060 atgggagacg atgcacttga gtctccaaac tccaacatca acgcgtatca aaagttgggg 3120 tttaaagtcg aggttgcctc acagctagaa ttttgctcac acgtctttga gcgggaggac 3180 ctcgccaggc cgttgaatgt aaacaaaatg ctttatcgtt tgatctttgg atacaayccg 3240 gcctgtggca acgcggaggt attgtgcaat tacctccaag ctgtggcttc tgttctcaac 3300 gagcttcgcc atgatccaca gctagttgct accctccatg agtggctggt ccctggcgcc 3360 gccacaaaat aaatacggag gggcatcccg agccaccaca taggttgcaa gagtggaacg 3420 ggaagtccta tagacaagcc gcgcgattct ggattacaaa cttctagcgg ggattctcat 3480 tggtgttctc atcgcaatcc ccctagtgat catagcggct tacctgatat tcctcaaaat 3540 cagtgcacac atccgagcga tagtgaatga atacgggcgc taaccgctca cgaaggaatg 3600 tcagaagacg cgctaaccgt cgtagacaga ctcggccagt ggtcgtggtc cgggctcccc 3660 caggacctag acgagtacga cgacgtagag cacgtgttgg aggaaacgct gtgcgaggac 3720 cgggaggaag aagcaaccgg gatgttctca ctttcacggt tgrcgatctc aaagccaact 3780 caaccgggat cctcaaattc ggaccgaacc tatctcagta cgcagcgttc aacaatggct 3840 tactcaaagc ctaccatgag tataaaatca caagtctcac tattcagtat aactcatgct 3900 cctccgacgc aactccaggt gcaatcgcac ttgaagtgga tacatcctgc tcccaaacaa 3960 caacaggctc caagattact agcttccccg tcaagaggaa cgccaagaaa gtcttcccgg 4020 cccccttcat cagggggaaa gatttcatga ctacgtcagc tgaccagttt tggttgctgt 4080 acaaagggaa tggagactcg agcctagcag gacaattcgt ttgccgattt gaatgycttt 4140 tccagaatcc caaataggta rgcgacgctc ccccaacacc caccccaata ccaaccccac 4200 ccgctccgac cccggcaccg gcttctaagt atcttggata ccaaggagtg ccgagcaaca 4260 tcgtgaaaac gagaggaaac tctgaatatc trgatgtggg tccgctcgaa aatgtaacca 4320 tgtatctctg gcaagacgaa tcgtggagca tygagcaact gtcagccgga tatcgcgtta 4380 acaatcgaga acgtgccata ccctttgtcc tctttccagt ggataaaggc aaatactccg 4440 tgttcataca atgcgagggc tttaaggcag ttaaagccaa aggaggcacg aacgacggca 4500 agatgagcgg gtttctctgt gacaatgcaa atctcgcggg ttggcgagca tacgcatata 4560 gtgggtgcac aatctctaat tataaaacat cagactccaa tgtccctggt catccagaca 4620 tgaaagtcaa tggtggatct tttaccgacc agttggttga gagagatttt tcttgttcat 4680 ttcacctcga ggtgcctcga caaggttatt ttagcctaga ggccccaccc attgaaaaga 4740 gtgatcattt caattttgtg gtgtcttacg ctaacttcac tgataaaatc ctggaatggg 4800 gttcaatctc cgtagcgata gacgaggtga atgacggagc gtatagcaga tcaaaatggg 4860 ataagactgc tgcaatgagt gctcgtttgc cgactcaggt gagcgcccct tctgaggttt 4920 acaccccgga aacacctgaa caaccgactg acgaagggac ggagagtatg cctccagccc 4980 cgaacccggc actgggaccg gacaacccag caaccaaaga acccacgccc aaaatcgtgg 5040 ataatccgga cccaaaggtg ctcaactggc tcaacaacca gcgagataaa cctgtggtgg 5100 aagaggtttt gcgtgaatct ccgatttatg ctcctccacc ccccccgtct ctaaccccga 5160 cttctgccga cactttraga caggcggata aggtccggag agctctcatg gctaacgctt 5220 cgcgtgcagc ctcacctccc cccrcgacta ccgaagttcc tgttcttggg gccrctgaca 5280 ccgcttctct aagtggatca ytacgcggtg gctccctcag aggtaatttg ggttctcgcc 5340 cctcccttcc gagggtcgct gacagccctc cccgttctgt aagtccggtc cgttctgaga 5400 ccagtactct acaaggcggt tctctgagtg gtggttcttt gaggggtggt aaccttcggg 5460 ctttgcctga ggccacaaga gagcaaagga gggaatatga acatctcaag aattcacgag 5520 gaaagacggt ggcaaaagcc catgctaaag aacacggtta caaaccaccg aaatcttcct 5580 cctccttatt tggttgagtg tcgagccact ataacgctcc ccgccccggg acacgggact 5640 ccaatcatga gtttaaactg agctctttcc atgagcctaa actggagaac tccgcaaagt 5700 tctaaaacta tgcagatggg ctagcgaccc agctcttcca ttgattttca ggatctttgg 5760 aagcccaagc taa 5773 //