ID GU570007; SV 1; linear; genomic RNA; STD; VRL; 5821 BP. XX AC GU570007; XX DT 25-MAR-2010 (Rel. 104, Created) DT 24-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate Haw87-4319, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5821 RX DOI; 10.1007/s10658-010-9703-0. RX AGRICOLA; IND44488578. RA ElSayed A.I., Weig A.R., Komor E.; RT "Molecular characterization of Hawaiian Sugarcane yellow leaf virus RT genotypes and their phylogenetic relationship to strains from other RT sugarcane-growing countries"; RL Eur. J. Plant Pathol. 129(3):399-412(2011). XX RN [2] RP 1-5821 RA Elsayed A.I., Weig A.R., Komor E.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Plant Physiology, Bayreuth University, Universitaetsstr. 30, Bayreuth RL 95440, Germany XX DR MD5; c06c650361e906f657b7265fa51e089e. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5821 FT /organism="Sugarcane yellow leaf virus" FT /lab_host="Saccharum hybrid cultivar H87-4319" FT /isolate="Haw87-4319" FT /mol_type="genomic RNA" FT /country="Germany" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 34..804 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:D4P4V8" FT /protein_id="ADD84807.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVHDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGXHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLGVFQNVARLQDILERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDDDDSGLETDFNN FT LSLGRPYINGLPPNEKIIFIHSNLVGYGPSSHDI" FT CDS join(209..2158,2158..3420) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:D4P4V9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D4P4V9" FT /protein_id="ADD84809.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDXTSIXRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWVFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVCSFRNGI FT KIPLTEFQVLLPAKVMDIVFLRGPPEWKSILGAKAAHFTPITQLNKGAVSFFTFDKEWM FT MHNAKITGTDGFYATVLSNTEKGCSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPPPDKPVENATAKEQTPVLTVEKATVADKPTPDQGNEPSGADHLKTP FT ESTPLKQDESTXELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPATSQDSGNAANSPRYTIPQNRRAHNGESASSQNTQKWRPKSP FT VSGGLPSAPKPRRQVLRLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEREDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 209..2161 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:D4P4W0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D4P4W0" FT /protein_id="ADD84808.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDXTSIXRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWVFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVCSFRNGI FT KIPLTEFQVLLPAKVMDIVFLRGPPEWKSILGAKAAHFTPITQLNKGAVSFFTFDKEWM FT MHNAKITGTDGFYATVLSNTEKGCSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPPPDKPVENATAKEQTPVLTVEKATVADKPTPDQGNEPSGADHLKTP FT ESTPLKQDESTXELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPATSQDSGNAANSPRYTIPQNRRAHNGESASSQNTQKWRPKSP FT VSGGLPSAPKPRRQV" FT CDS 3615..5645 FT /codon_start=1 FT /transl_except=(pos:4203..4205,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="stop codon readthrough; ORF5" FT /db_xref="GOA:D4P4W1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4P4W1" FT /protein_id="ADD84812.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVSDAPPTPTPTPTPPALTPAPASKY FT LGYQGVPSNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYK FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFSLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTAAMSARLPTQVSAPSEVYTPETPE FT QPTDEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRAASPPPXTTEVPVLGAADTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLRALPE FT ATREQRREYEXLKNSXGKTVAKAHAKEHGYKPPXSSSSLFG" FT CDS 3615..4205 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="ADD84810.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3646..4098 FT /codon_start=1 FT /product="putative movement protein p17" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:D4P4W3" FT /protein_id="ADD84811.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDQEEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5821 BP; 1551 A; 1529 C; 1388 G; 1340 T; 13 other; tttggaccaa gcctctgact tgtaaactgc tctatgcttt tcaacgaatt ctctgttgag 60 ggaattaaat tcagagcaca cgaaagcact tcacctgtct ttcgtgggga ggtttccagg 120 tgtttgactt actacagagt cttcgcctgt aagtgggttg agttgaccta tcaagatcca 180 ctcacacgcc atttagtaca cgattactat ggccccaaca ctcccgttta caactggctg 240 gagcacatac gccttattgt tgtcactatg gtgcctattc tgctcctgcc agacacaacc 300 attggacrgc acatccatat yaagagacag tacctccagt ctgtcctttt atggcttgcc 360 cgcaacaaac tctactatag agttaagaga tgccgttcca agcggtttgt actcgagcaa 420 gatcacatcg gccccgaact tttccgaact cagctactcc agtatgctgg gttgggtgtt 480 tttcaaaatg tggctcgatt gcaagacatt ctcgagagag gctacgacac tttccgatcg 540 gttcttggag tacaccttct cgaacacgaa aggtttgtta gtcgaattct tgaacaacct 600 attatggaac ctgatcaagc tgtacgttta tgctttcact atcataacac gcttgatcat 660 gacgatgacg attctggcct ggaaaccgat tttaataatc tgtctcttgg tcgtccttac 720 atcaatggtc taccacctaa tgagaaaatt attttcattc attcaaattt ggtgggttat 780 ggcccctctt ctcatgatat ataggaccgt catgtggatt cacagaaggt tgttcgcttc 840 acgtggggac gagaaaatgg tccaaggttt caaaagcttt gccgtcccca tgtcaccacc 900 aggacactca gtgcttgaga tagtacaccc tgatgattct cacatgggat atgcatcctg 960 tgttcgattg aaaaacgggg aagaggctct catgacatcc gttcactgca taagcgattc 1020 tttcaaagtt tgctcgttca ggaatggtat caagatccct ctaacggaat tccaagtgct 1080 gttgcccgcc aaagtgatgg atatcgtttt tcttcgaggc ccacccgagt ggaaatccat 1140 ccttggagcc aaagcagccc atttcactcc aatcacccag ctcaacaaag gagctgtgtc 1200 tttcttcact ttcgataagg agtggatgat gcacaatgca aagattacag gaactgatgg 1260 tttttatgcc acagttctta gtaacactga gaagggctgc agtggcgccc cctattggaa 1320 cgggaaatct atagtagggg tgcataaagg gcatgtgtac ggagacgatt ccaagaatta 1380 caatcttatg tcgccgattc cccctgtcaa ggggttaacg gcgcctaatt ttgtgtatga 1440 gtctccgtct ctacaaggag atgtctttag cgacgccgac gtttcagaca ttgctgatta 1500 cgccgaggag gtgtatgaga aaacccttgc agagcctaag gtgtggaaac ccgccagcgg 1560 caaatactgg tgggagatgg ccgaagaaga ggatgatttt gtcgttgagg caaattcacc 1620 tccccctgat aaacctgttg agaacgctac agcaaaagag cagactccag ttttgactgt 1680 cgagaaagct acggttgctg ataagccgac tccagaccag ggaaacgagc caagtggcgc 1740 cgaccactta aaaacaccgg aatccacccc gctcaagcaa gacgaatcta caraagagtt 1800 gctcaacaac atcgtctcgc agttgattca aaagatcgac ctgagctcta ttgcaacgag 1860 ggtggaggag aaactgctgc gtcaggccca gaacaaacag cagcagaacg gagggaagaa 1920 gtcacccaga aaacgcaaga cctcgaacac ttcttccaag ccgcatacaa atgggaagag 1980 tccaccagcg acatcccagg attcaggaaa tgcggcaaac tccccgcgct ataccatccc 2040 ccaaaaccga agagcacaca atggggagag cgcatcatct cagaacaccc agaaatggcg 2100 tccaaagtcg ccggtttcgg gtggccttcc ttcggcgccc aagccgagga gacaagtctg 2160 agactccaag cggcacgctg gcttaaacga gctgagtcag cggagaagcc gacagaaaaa 2220 caacgcaagc tcgtcattga tcgtgtggtc aaggcatatg aaccgtgtag aaccaatgcc 2280 ccacacacca gctcctctgg cagcctcatc tggtccgact tcttgaaaga tttcaaggag 2340 gctgtcaact cactagaact cgacgcagga ataggtctcc catacaaact tcttcacaaa 2400 gacacccacc gtcagatggt tgaagacccc aaattcctgc cgctcctgac gcgattgacc 2460 tggaaccgtt tacagaagat gtcccaggtt gatttccagg agatgactcc tgaacagcta 2520 gtgagagaag gattgtgcga tccgattcgt ttgttcgtca aaggagaacc gcacaagcag 2580 gcgaagcttg atgaagggcg ctaccgcctc atcatgtcag tctcgctggt agatcaactg 2640 gtagcccggg ttttgttcca agcacaaaac aaaagagaga tagctttgtg gagagctatc 2700 ccttcaaagc ccggtttcgg cttatccaca gacagggaag cacgcgaatt catcgaatcc 2760 ctgtccaaga cagtagggtg ttccccagca gaagtcattc atggctggag ggacaagatc 2820 gtacccaccg actgttccgg ttttgactgg tcagtcgccg actggatgct cgaagacgac 2880 atggaagtga gaaatcttct cactatcaat aacaacgagc taacccgccg cctcagggcg 2940 tgctggttga agtgcatcac aaactctgtg atttgcacgt ccggcggtgt cttgtacgcc 3000 caaactcatc ctggggtgca aaaatctgga tcttacaaca cgagttcatc caattccagg 3060 attcgagtaa tggctgcttt tcattgcggc gcagattggg cgatagccat gggagatgat 3120 gcacttgagt ctccaaactc caacatcaac gcgtatcaaa agttggggtt taaagtcgag 3180 gttgcctcac agctagaatt ttgctcacac gtctttgagc gggaggacct cgccaggccg 3240 ttgaatgtaa acaaaatgct ttatcgtttg atctttggat acaacccggc ctgtggcaac 3300 gcggaggtat tgtgcaacta cctccaagct gtggcttctg tcctcaacga acttcgccat 3360 gatccacagc tagttgctac cctccatgag tggctggtcc ctggcgccgc cacaaaataa 3420 atacggaggg gcatcccgag ccaccacata ggttgcaaga gtgaaacggg aagtcctata 3480 gacaagccgc gcgattctgg attacaaact tctagcgggg attctcattg gtgttctcat 3540 cgcaatcccc ctagtgatca tagcggctta cctgatattc ctcaaaatca gtgcacacat 3600 ccgagcgata gtgaatgaat acgggcgcta accgctcacg aaggaatgtc agaagacgcg 3660 ctaaccgtcg tagacagact cggccagtgg tcgtggtccg ggctccccca ggacctagac 3720 gagtacgacg acgtagagca cgtgttggag gaaacgctgt gcgaggacca ggaggaagaa 3780 gcaaccggga tgttctcact ttcacggttg acgatctcaa agccaactca accgggatcc 3840 tcaaattcgg accgaactta tctcagtacg cagcgttcaa caatggctta ctcaaagcct 3900 accatgagta taaaatcaca agtctcacta ttcagtataa ctcatgctcc tccgacgcaa 3960 ctccaggtgc aatcgcactt gaagtggata catcctgctc ccaaacaaca acaggctcca 4020 agattactag cttccccgtc aagaggaacg ccaagaaagt cttcccggcc cccttcatca 4080 gggggaaaga tttcatgact acgtcagctg accagttttg gttgctgtac aaagggaatg 4140 gagactcgag cctagcagga caattcgttt gccgatttga atgcctcttc cagaatccca 4200 aataggtaag cgacgctccc ccaacaccca ccccaacacc aaccccaccc gctctgaccc 4260 cggcaccggc ttctaagtat cttggatacc aaggagtgcc gagcaacatc gtgaaaacaa 4320 gaggaaactc tgaatatcta gatgtgggtc cgctcgaaaa tgtaaccatg tatctctggc 4380 aagacgaatc gtggagcaty gagcaactgt cagccggata tcgcgttaac aatcgagaac 4440 gtgccatacc ctttgtcctc tttccagtgg ataaaggcaa atactccgtg ttcatacaat 4500 gcgagggctt taaggcagtt aaagccaaag gaggcacgaa cgacggcaag atgagcgggt 4560 ttctctgtga caatgcaaat ctcgcgggtt ggcgagcata cgcatatagt gggtgcacaa 4620 tctctaatta taaaacatca gactccaatg tccctggtca tccagacatg aaagtcaatg 4680 gtggatcctt taccgaccag ttggttgaga gagatttttc ttgttcattt cacctcgagg 4740 tgcctcaaca aggttatttt agcctagagg ccccacccat tgaaaagagt gatcatttca 4800 attttgtggt gtcttacgct aacttcactg ataaaatcct ggaatggggt tcaatctccg 4860 tagcgataga cgaggtgaat gacggagcgt atagcagatc aaaatgggat aagactgccg 4920 caatgagtgc tcgtttgccg actcaggtga gcgccccttc tgaggtttac accccggaaa 4980 cacctgaaca accgactgac gaagggacgg agagtatgcc tccagccccg aacccggcac 5040 tgggaccgga caacccagca accaaagaac ccacgcccaa aatcgtggat aatccggacc 5100 caaaggtgct caactggctc aacaaccagc gagataaacc tgtggtggaa gaggttttgc 5160 gtgaatctcc gatttatgct cctccacccc ccccgtctct aaccccgact tctgccgaca 5220 ctttragaca ggcggataag gtccggagag ctctcatggc taacgcttcg cgtgcagcct 5280 cacctccccc crcgacyacc gaagttcctg ttcttggggc cgctgacacc gcttctctaa 5340 gtggatcatt acgcggtggc tccctcagag gtaatttggg ttctcgcccc tcccttccga 5400 gggtcgctga cagccctccc cgttctgtaa gtccggtccg ttctgagacc agyactctac 5460 arggcggttc tctgagtggt ggttctttga grggtggtaa ccttcgggct ttgcctgagg 5520 ccacaagaga gcaaaggagg gaatatgaac rtctcaagaa ttcacragga aagacggtgg 5580 caaaagccca tgctaaagaa cacggttaca aaccaccgra atcttcctcc tccttatttg 5640 gttgagtgtc gagccactat aacgctcccc gccccgggac acgggactcc aatcatgagt 5700 ttaaactgag ctctttccat gagcctaaac tggagaactc cgcaaagttc taaaactatg 5760 cagatgggct agcgacccag ctcttccatt gattttcagg atctttggaa gcccaagcta 5820 a 5821 //