ID GU570006; SV 1; linear; genomic RNA; STD; VRL; 5770 BP. XX AC GU570006; XX DT 25-MAR-2010 (Rel. 104, Created) DT 24-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate Haw87-4094, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5770 RX DOI; 10.1007/s10658-010-9703-0. RX AGRICOLA; IND44488578. RA ElSayed A.I., Weig A.R., Komor E.; RT "Molecular characterization of Hawaiian Sugarcane yellow leaf virus RT genotypes and their phylogenetic relationship to strains from other RT sugarcane-growing countries"; RL Eur. J. Plant Pathol. 129(3):399-412(2011). XX RN [2] RP 1-5770 RA Elsayed A.I., Weig A.R., Komor E.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Plant Physiology, Bayreuth University, Universitaetsstr. 30, Bayreuth RL 95440, Germany XX DR MD5; b56a3e63cd1de8b4eb52b58f4c862fab. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5770 FT /organism="Sugarcane yellow leaf virus" FT /lab_host="Saccharum hybrid cultivar H87-4094" FT /isolate="Haw87-4094" FT /mol_type="genomic RNA" FT /country="Germany" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 34..804 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:D4P4V2" FT /protein_id="ADD84801.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTXGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQNVARLQDILERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNALDHDDDDSGLETDFNN FT LSLGRPYINGLPPNEKIIFIHSNLVGHGPSSHDI" FT CDS join(209..2107,2107..3369) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:D4P4V3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D4P4V3" FT /protein_id="ADD84803.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVIWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIABYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPPPDKPVENATEPTPDQGNEPSGADHLKTPESTPLKQDESTKELLNN FT IVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHINGKSPP FT ATSQGSGNAVNSPRYTIPQNRRAHNGESASSQNTQKWRPKSPVSGGPPSAPKPRRQVLR FT LQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKE FT AVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQ FT LVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWR FT AIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWML FT EDDMEVRNFLTINNNELTRRLRACWLKYITNSVICTSGGVLYAQTHPGVQKSGSYNTSS FT SNSRIRVMAAFHCGADWAIAMGDDALESPNSNISAYQKLGFKVEVASQLEFCSHVFERE FT DLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVPNELRHDPQLVATLHEWLVS FT GAATK" FT CDS 209..2110 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:D4P4V4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D4P4V4" FT /protein_id="ADD84802.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLMIYRTVIWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIABYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPPPDKPVENATEPTPDQGNEPSGADHLKTPESTPLKQDESTKELLNN FT IVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHINGKSPP FT ATSQGSGNAVNSPRYTIPQNRRAHNGESASSQNTQKWRPKSPVSGGPPSAPKPRRQV" FT CDS 3564..5594 FT /codon_start=1 FT /transl_except=(pos:4152..4154,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="stop codon readthrough; ORF5" FT /db_xref="GOA:D4P4V5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4P4V5" FT /protein_id="ADD84806.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVSDAPPTPTPTPTPPAPTPAPASKY FT LGYQGVPSNIVKTRGNSEYLDVGPLGNVTMYLWQDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYK FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFSLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTAAMSARLPTQVSAPSEVYTPETPE FT QPTDEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRAASPPPTTTEVPILGAADTASQS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLRALPE FT ATREQRREYEHLKNSRGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3564..4154 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="ADD84804.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3595..4047 FT /codon_start=1 FT /product="putative movement protein p17" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="ADD84805.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5770 BP; 1542 A; 1518 C; 1376 G; 1329 T; 5 other; tttggaccaa gcctctgact tgtaaactgc tctatgcttt tcaacgaatt ctctgttgag 60 ggaattaaat tcagagcaca cgaaagcact tcacctgtct ttcgtgggga ggtttccagg 120 tgtttgacct actacagagt cttcgcctgt aagtgggttg agttgaccta tcaagatcca 180 ctcacacgcc atttagtaca agattactat ggccccaaca ctcccgttta caactggctg 240 gagcacatac gccttattgt tgtcactatg gtgcctattc tgctcctgcc agacacaacc 300 aytggacggc acatccatat taagagacag tacctccagt ctgtcctttt atggcttgcc 360 cgcaacaaac tctactatag agttaagaga tgccgttcca agcggtttgt actcgagcaa 420 gatcacatcg gccccgaact tttccgaact cagctactcc agtatgctgg gttggatgtt 480 tttcaaaatg tggctcgatt gcaagacatt ctcgagagag gctacgacac tttccgatcg 540 gttcttggag tacaccttct cgaacacgaa aggtttgtta gtcgaattct tgaacaacct 600 attatggaac ctgatcaagc tgtacgttta tgctttcact atcataacgc gcttgatcat 660 gacgatgacg attctggcct ggaaaccgat tttaataatc tgtctcttgg tcgtccttac 720 atcaatggtc taccacctaa tgagaaaatt attttcattc attcaaattt ggtgggtcat 780 ggcccctctt ctcatgatat ataggaccgt catatggatt cacagaaggt tgttcgcttc 840 acgtggggac gagaaaatgg tccaaggttt caaaagtttt gccgtcccca tgtcaccacc 900 aggacactca gtgcttgaga tagtacaccc tgatgattct cacatgggat atgcatcctg 960 tgttcgattg aaaaacgggg aagaggctct catgacatcc gttcactgca taagcgattc 1020 tttcaaagtt cgctcgttca ggaatggtat caagatccct ctaacggaat tccaagtgct 1080 gttgcccgcc aatgtgatgg atattgttct tcttcgaggc ccacccgagt ggaaatccat 1140 ccttggagcc aaagcagccc atttcactcc agtcaaccag ctcaacaaag gagctgtgtc 1200 tttcttcatt ttcgataagg agtggatgat gcacaatgca aagattacag gaactgatgg 1260 tttttatgcc acagttctta gtaacactga gaagggctac agtggcgccc cctattggaa 1320 cgggaaatct atagtagggg tgcataaagg gcatgtgtac ggagacgatt ccaagaatta 1380 caatcttatg tcgccgattc cccctgtcaa ggggttaacg gcgcctaatt ttgtgtatga 1440 gtctccgtct ctacaaggag atgtctttag cgacgccgac gtttcagaca ttgctratta 1500 cgccgaggag gtgtatgaga aaacccttgc agagcctaaa gtgtggaaac ccgccagcgg 1560 caaatactgg tgggagatgg ccgaagaaga ggatgatttc gtcgttgagg caaattcacc 1620 tccccctgat aaacctgttg agaacgctac agagccgact ccagaccagg gaaacgagcc 1680 aagtggcgcc gaccacttaa aaacaccgga atccaccccg ctcaagcaag acgaatctac 1740 aaaagagttg ctcaacaaca tcgtctcgca gttgattcaa aagatcgacc tgagctccat 1800 tgcaacgagg gtggaggaga aactgctgcg tcaagcccag aacaaacagc agcagaacgg 1860 agggaagaag tcacccagaa aacgcaagac ctcgaacact tcttccaagc cgcatataaa 1920 tgggaagagt ccaccagcga catcccaggg ttcaggaaat gcggtaaact ccccgcgcta 1980 taccatcccc caaaaccgaa gagcacacaa tggggagagc gcatcatctc agaacaccca 2040 gaaatggcgt ccaaagtcgc cggtttcggg tggccctcct tcggcgccca agccgaggag 2100 acaagtctga gactccaagc ggcacgctgg cttaaacgag ctgagtcagc ggagaagccg 2160 acagaaaaac aacgcaagct cgtcattgat cgtgtggtca aggcatatga accgtgtaga 2220 accaatgccc cacacaccag ctcctccggc agcctcatct ggtccgactt cttgaaagat 2280 ttcaaggagg ctgtcaactc actagaactc gatgcaggaa taggtctccc atacaaactt 2340 cttcacaaag acacccaccg tcagatggtt gaagacccca aattcctgcc gctcctgacg 2400 cgattgacct ggaaccgttt acagaagatg tcccaggttg atttccagga gatgactcct 2460 gaacaactag tgagagaagg attgtgcgat ccrattcgtt tgttcgtcaa aggagaaccg 2520 cacaagcagg cgaagcttga tgaagggcgc taccgcctca tcatgtcagt ctcgctggta 2580 gatcaactgg tagcccgggt tttgttccaa gcacaaaaca aaagagagat agctttgtgg 2640 agagctatcc cttcaaagcc cggttttggc ttatccacag acagggaagc acgcgaattc 2700 atcgaatccc tgtccaagac agtagggtgt tccccagcag aagtcattca tggctggagg 2760 gacaagatcg tacccaccga ctgttccggt tttgactggt cagtcgccga ctggatgctc 2820 gaagacgaca tggaagtgag aaattttctc actatcaata acaacgagct aacccgccgc 2880 ctcagggcgt gctggttgaa gtacatcaca aactctgtga tttgcacgtc cggcggtgtc 2940 ttgtacgccc aaactcatcc tggggtgcaa aaatctggat cttacaacac gagttcatcc 3000 aattccagga ttcgagtgat ggctgctttt cattgcggcg cagactgggc gatagccatg 3060 ggagacgatg cacttgagtc tccaaactcc aacatcagcg cgtatcaaaa gttggggttt 3120 aaagtcgagg ttgcctcaca gctagaattt tgctcacacg tctttgagcg ggaggacctc 3180 gccaggccgt tgaatgtaaa caaaatgctt tatcgtttga tctttggata caacccggcc 3240 tgtggcaacg cggaggtatt gtgcaattac ctccaagctg tggcttctgt tcccaacgaa 3300 cttcgccatg atccacagct agttgctacc ctccatgagt ggctggtctc tggcgccgcc 3360 acaaaataaa tacggagggg catcccgagc caccacatag gttgcaagag tggaacggga 3420 agtcctatag acaagccgcg cgattctgga ttacaaactt ctagcgggga ttctcattgg 3480 tattctcatc gcaatccccc tagtgatcat agcggcttac ctgatattcc tcaaaatcag 3540 tgcacacatc cgagcgatag tgaatgaata cgggcgctaa ccgctcacga aggaatgtca 3600 gaagacgcgc taaccgtcgt agacagactc ggccagtggt cgtggtccgg gctcccccag 3660 gacctagacg agtacgacga cgtagagcac gtgttggagg aaacgctgtg cgaggaccgg 3720 gaggaagaag caaccgggat gttctcactt tcacggttga cgatctcaaa gccaactcaa 3780 ccgggatcct caaattcgga ccgaacctat ctcagtacgc agcgttcaac aatggcttac 3840 tcaaagccta ccatgagtat aaaatcacaa gtctcactat tcagtataac tcatgctcct 3900 ccgacgcaac tccaggtgca atcgcacttg aagtggatac atcctgctcc caaacaacaa 3960 caggctccaa gattactagc ttccccgtca agaggaacgc caagaaagtc ttcccggccc 4020 ccttcatcag ggggaaagat ttcatgacta cgtcagctga ccagttttgg ttgctgtaca 4080 aagggaatgg agactcgagc ctagcaggac aattcgtttg ccgatttgaa tgccttttcc 4140 agaatcccaa ataggtaagc gacgctcccc caacacccac cccaacacca accccacccg 4200 ctccgacccc ggcaccggct tctaagtatc ttggatacca aggagtgccg agcaacatcg 4260 tgaaaacaag aggaaactct gaatatctag atgtgggtcc gctcggaaat gtaaccatgt 4320 atctctggca agacgaatcg tggagcatyg agcaactgtc agccggatat cgcgttaaca 4380 atcgagaacg tgccataccc tttgtcctct ttccagtgga taaaggcaaa tactctgtgt 4440 tcatacaatg cgagggcttt aaggcagtta aagccaaagg aggcacgaac gatggcaaga 4500 tgagcgggtt tctctgtgac aatgcaaatc tcgcgggttg gcgagcatac gcatatagtg 4560 ggtgcacaat ctctaattat aaaacatcag actccaatgt ccctggtcat ccagacatga 4620 aagtcaatgg tggatctttt accgaccagt tggttgagag agatttttct tgttcatttc 4680 acctcgaggt gcctcaacaa ggttatttta gcctagaggc cccacccatt gaaaagagtg 4740 atcatttcaa tttcgtggtg tcttacgcta acttcactga taaaatcctg gaatggggtt 4800 cgatctccgt agcgatagac gaggtgaatg acggagcgta tagcagatca aaatgggata 4860 agactgctgc aatgagtgcc cgtttgccga ctcaggtgag cgccccttct gaggtttaca 4920 ccccggaaac acctgaacaa ccgactgacg aagggacgga gagtatgcct ccagccccga 4980 acccggcact gggaccggac aacccagcaa ccaaagaacc cacgcccaaa atcgtggata 5040 atccggaccc aaaggtgctc aactggctca acaaccagcg agataaacct gtggtggaag 5100 aggttttgcg tgaatctccg atttatgctc ctccaccccc cccgtctcta accccgactt 5160 ctgccgacac tttragacag gcggataagg tccggagagc tctcatggct aacgcttcgc 5220 gtgcagcctc acctcccccc acgactaccg aagttcctat tcttggggcc gctgacaccg 5280 cttctcaaag tggatcatta cgcggtggct ccctcagagg taatttgggt tctcgcccct 5340 cccttccgag ggtcgctgac agccctcccc gttctgtaag tccggtccgt tctgagacca 5400 gcactctaca aggcggttct ctgagtggtg gttctttgag gggtggtaac cttcgggctt 5460 tgcctgaggc cacaagagag caaaggaggg aatatgaaca tctcaagaat tcacgaggaa 5520 agacggtggc aaaagcccat gctaaagaac acggttacaa accaccgaaa tcttcctcct 5580 ccttatttgg ttgagtgtcg agccactata acgctccccg ccccgggaca cgggactcca 5640 atcatgagtt taaactgagc tctttccacg agcctaaact ggagaactcc gcaaagttct 5700 aaaactatgc agatgggcta gcgacccagc tcttccattg attttcagga tctttggaag 5760 cccaagctaa 5770 //