ID   GU570004; SV 1; linear; genomic RNA; STD; VRL; 1880 BP.
XX
AC   GU570004;
XX
DT   25-MAR-2010 (Rel. 104, Created)
DT   24-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Sugarcane yellow leaf virus isolate Haw73-6110b/fragmentC RNA-dependent RNA
DE   polymerase and putative aphid transmission factor genes, partial cds; and
DE   capsid protein and putative movement protein p17 genes, complete cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1880
RX   DOI; 10.1007/s10658-010-9703-0.
RX   AGRICOLA; IND44488578.
RA   ElSayed A.I., Weig A.R., Komor E.;
RT   "Molecular characterization of Hawaiian Sugarcane yellow leaf virus
RT   genotypes and their phylogenetic relationship to strains from other
RT   sugarcane-growing countries";
RL   Eur. J. Plant Pathol. 129(3):399-412(2011).
XX
RN   [2]
RP   1-1880
RA   Elsayed A.I., Weig A.R., Komor E.;
RT   ;
RL   Submitted (25-JAN-2010) to the INSDC.
RL   Plant Physiology, Bayreuth University, Universitaetsstr. 30, Bayreuth
RL   95440, Germany
XX
DR   MD5; 0981a5f1bdcd759b879937225a860cd6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1880
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /lab_host="Saccharum hybrid cultivar H73-6110"
FT                   /isolate="Haw73-6110b/fragmentC"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /isolation_source="leaf"
FT                   /db_xref="taxon:94290"
FT   CDS             <1..891
FT                   /codon_start=1
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:D4P4U6"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D4P4U6"
FT                   /protein_id="ADD84795.1"
FT                   /translation="GLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQA
FT                   QNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSG
FT                   FDWSVADWMLEDDMEVRNFLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGV
FT                   QKSGPYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQL
FT                   EFCSHVFEREDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQL
FT                   VATLHEWLVPGAATK"
FT   CDS             1086..>1880
FT                   /codon_start=1
FT                   /transl_except=(pos:1674..1676,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="stop codon readthrough; ORF5"
FT                   /db_xref="GOA:D4P4U7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D4P4U7"
FT                   /protein_id="ADD84798.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVGDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPIPTPPAPTPAPASKY
FT                   LGYQGVPSNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQL"
FT   CDS             1086..1676
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:D4P4U8"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D4P4U8"
FT                   /protein_id="ADD84796.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVGDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT   CDS             1117..1569
FT                   /codon_start=1
FT                   /product="putative movement protein p17"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:D4P4U9"
FT                   /protein_id="ADD84797.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLAISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ   Sequence 1880 BP; 496 A; 500 C; 466 G; 418 T; 0 other;
     ggattgtgcg atccgattcg tttgttcgtc aaaggagaac cgcacaagca ggcgaagctt        60
     gatgaagggc gctaccgcct catcatgtca gtctcgctgg tagatcaact ggtagcccgg       120
     gttttgttcc aagcacaaaa caaaagagag atagctttgt ggagagctat cccttcaaag       180
     cccggttttg gcttatccac agacagggaa gcacgcgaat tcatcgaatc cctgtccaag       240
     acagtagggt gttccccagc agaagtcatt catggctgga gggacaagat cgtacccacc       300
     gactgttccg gttttgactg gtcagtcgcc gactggatgc tcgaagacga catggaagtg       360
     agaaattttc tcactatcaa taacaacgag ctaacccgcc gcctcagagc gtgctggttg       420
     aagtgcatca caaactctgt gatttgcacg tccggcggtg tcttgtacgc ccaaactcat       480
     cctggggtgc aaaaatctgg accttacaac acgagttcat ccaattccag gattcgagta       540
     atggctgctt ttcattgcgg cgcagattgg gcgatagcca tgggagacga tgcacttgag       600
     tctccaaact ccaacatcaa cgcgtatcaa aagttggggt ttaaagtcga ggttgcctca       660
     cagctagaat tttgctcaca cgtctttgag cgggaggacc tcgccaggcc gttgaatgta       720
     aacaaaatgc tttatcgttt gatctttgga tacaatccgg cctgtggcaa cgcggaggta       780
     ttgtgcaatt acctccaagc tgtggcttct gttctcaacg agcttcgcca tgatccacag       840
     ctagttgcta ccctccatga gtggctggtc cctggcgccg ccacaaaata aatacggagg       900
     ggcatcccga gccaccacat aggttgcaag agtggaacgg gaagtcctat agacaagccg       960
     cgcgattctg gattacaaac ttctagcggg gattctcatt ggtgttctca tcgcaatccc      1020
     cctagtgatc atagcggctt acctgatatt cctcaaaatc agtgcacaca tccgagcgat      1080
     agtgaatgaa tacgggcgct aaccgctcac gaaggaatgt cagaagacgc gctaaccgtc      1140
     gtagacagac tcggccagtg gtcgtggtcc gggctccccc aggacctaga cgagtacgac      1200
     gacgtagagc acgtgttgga ggaaacgctg tgcgaggacc gggaggaaga agcaaccggg      1260
     atgttctcac tttcacggtt ggcgatctca aagccaactc aaccgggatc ctcaaattcg      1320
     gaccgaacct atctcagtac gcagcgttca acaatggctt actcaaagcc taccatgagt      1380
     ataaaatcac aagtctcact attcagtata actcatgctc ctccgacgca actccaggtg      1440
     caatcgcact tgaagtggat acatcctgct cccaaacaac aacaggctcc aagattacta      1500
     gcttccccgt caagaggaac gccaagaaag tcttcccggc ccccttcatc agggggaaag      1560
     atttcatgac tacgtcagct gaccagtttt ggttgctgta caaagggaat ggagactcga      1620
     gcctagcagg acaattcgtt tgccgatttg aatgtctttt ccagaatccc aaataggtag      1680
     gcgacgctcc cccaacaccc accccaatac caaccccacc cgctccgacc ccggcaccgg      1740
     cttctaagta tcttggatac caaggagtgc cgagcaacat cgtgaaaacg agaggaaact      1800
     ctgaatatct ggatgtgggt ccgctcgaaa atgtaaccat gtatctctgg caagacgaat      1860
     cgtggagcat tgagcaactg                                                  1880
//