ID GU563326; SV 1; linear; genomic RNA; STD; VRL; 2528 BP. XX AC GU563326; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate CHAKE polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2528 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2528 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; 532a0bb3544e9f7011895e003a0c137a. XX FH Key Location/Qualifiers FH FT source 1..2528 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="CHAKE" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2397 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE7" FT /protein_id="ADR73021.1" FT /translation="QPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDDLILNA FT PDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARRDGFFIPKLKKERIV FT AILEWERGDEIMRTRSALNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLDRKRVE FT GLYLDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQLSSMNKREEEVTSKIRMGIEAP FT ITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIGGPVLV FT EDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKVGDDPI FT IFKGVLRGEIVMPRGPNTFGWDPIFQPLNWRRTFAEMMAEEKNMISHRFRALSLVRDFL FT KDSSYFSFAKGVDRDFFIDVQAIDKDEIETEITKLKELWRNNKPTRTRSPFESRRLRAP FT QVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTDKGKAPMEPPAEQS FT QPEKSVGEDEGKHKKTRFRIRAGGGDEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWI FT PRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTIL FT PAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNF FT SSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILA FT ANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE" FT mat_peptide <1..582 FT /product="NIb" FT mat_peptide 583..1260 FT /product="HAM1-like protein" FT mat_peptide 1261..2394 FT /product="CP" FT 3'UTR 2398..2528 XX SQ Sequence 2528 BP; 823 A; 402 C; 631 G; 672 T; 0 other; cagccctcaa ctgttgtaga caacaccata attttgatga ttgtggttga gtattgtaga 60 gaagtgatgg cacatgaagg tattgaaatg aaatataagt acatgtgtaa tggagatgac 120 ctcattctta atgcgcctga tgaagaaatt ccaataattc agagtcgttt caagaatttg 180 ttcgcagaat gtggtttgaa ctatgacttt gatgatgtcc acaaggagat agacacaata 240 gagtatatga gccactcatt tgctcgaaga gatggatttt tcattccaaa gctgaagaag 300 gagagaatag ttgcaatact tgagtgggaa agaggagatg agatcatgag gacgagaagc 360 gctcttaatg cagcttacat tgagagtttt ggttatgatg atttaatgac agagattgaa 420 aggtttgctg tgttctgggc atctgaaaag ggttgtgagt acccgttatt agatagaaag 480 cgagttgaag ggctttactt ggatgaacac actgatatta atgaggaatg gttgagtggc 540 atcttaccac catcttttga gaattgctac attgatttac aggtggtaga caggcctcag 600 ttatcgagca tgaacaagag agaagaggaa gtcacaagta aaatccggat ggggatcgaa 660 gcaccgatta cattcgtaac agggaatgca caaaaattga aggaagtaaa acaaatcttt 720 ggtcccacta ttccaatcat ttctcggaaa gttgacttgc cagaaccaca aggaacagtt 780 gaggaaatta ttaaggaaaa agtgcgtgta gcgtctgagt tgattggagg gcccgttctc 840 gtagaggata caagtttgtg ttttgatgct ctcaatggtc tcccaggacc atacattaag 900 tggttcatgg aagggattgg actagaagga ttgtataagt tggtggaacc atatcaaaat 960 aaaatggcta gtgctctctg tgtgtttgct tttgtaaata aggttggcga tgatcctata 1020 atctttaagg gtgtactaag aggtgagatt gtaatgccac gtggaccaaa tacatttggg 1080 tgggacccaa ttttccagcc acttaactgg agaaggactt ttgctgagat gatggccgag 1140 gagaagaata tgatatctca tcgatttcga gctctgtcgc tggtaagaga ctttttgaag 1200 gactcaagct atttcagctt tgcaaagggc gttgatcgtg atttcttcat tgatgtccaa 1260 gcaattgaca aggatgagat tgaaactgaa ataacaaaat tgaaggaatt gtggaggaac 1320 aacaagccaa ctagaactcg aagtccattt gaatcaagga ggctccgtgc ccctcaagta 1380 gctcgtgtga acgaactgct caaacaactg aaagatgctg ggattcaaac aagtaaaagg 1440 ccatgtggag aacctgatga aggggaggtt gctagcccag agtcaagcga agatgaggag 1500 caacgaacag acaaaggaaa agcacctatg gaaccacctg ctgagcaaag tcaaccagag 1560 aagtctgtag gtgaggatga ggggaaacat aaaaagacaa ggttcagaat aagagctggt 1620 ggtggagatg aaaagagaga tgatatagat aagattccaa ccaatgctct agaatttcgg 1680 aagagtttca aaccaccaaa agtgtcacaa gcagcatatg tgtggatacc gcgttcgcag 1740 agagacaatt tgacacctga tgtcatacag aactttctgg catacgtgcc tccatcacat 1800 gctatagaca atcaattggc ttccggagtt gaagttgaga attgggccat cgaagtctca 1860 aaagcttatg gagtcaccat tcaagagttt tatagaacga tcctacctgc ttggattgtt 1920 aattgtattg tgaatgggac tagcgatgag aggaagaacg agaaatcgtg gagagctgtt 1980 gagctaaatg cacagggtga ggatattgat gattcggaat accctatgga accaatgtat 2040 aaatttgctc tcccaacaat gaggaagata atgagaaatt tttccagcca agcaatttta 2100 atgtatcaga atagtgtgac tgctggaaaa gcttttgtaa taaaagcagc tcgaaatgcc 2160 gggtatacaa gcattgaaaa taagtggttg ggtattgact tcctagccga agcacaattg 2220 tcacaaagcc aactagatat caaacatcaa atattggctg ctaatgttgg tagaagtaaa 2280 actaagttgt ttgctttagc tgctcctagt gacgataata atgtggataa agaaaggcac 2340 actacgcggg atgttagtgc aactaggcat agctatgcag gtgctgctat tgaataaatt 2400 aatttgaaag tcaagtttgg tggagtttta ggtaacttgt tatattctgg ttgtgaagcc 2460 aagatatatt caggagccct ttctccatat ccttttattt agtgtggaaa cacaatatat 2520 aaaagtac 2528 //