ID GU563324; SV 1; linear; genomic RNA; STD; VRL; 2543 BP. XX AC GU563324; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate KOR9 polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2543 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2543 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; b54de070cdebd0aa6d504b454153124a. XX FH Key Location/Qualifiers FH FT source 1..2543 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="KOR9" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2412 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE5" FT /protein_id="ADR73019.1" FT /translation="GNNSGQPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDD FT LILNAPDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARRDGFFIPKLK FT KERIVAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLD FT RKRVEGLYLDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQSSNMTKREEEVTSKVRM FT GIEAPITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIG FT GPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKV FT GDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWRRTFAEMMAEEKNMISHRFRALSL FT VRDFLKDSSYFNFAKGVDRDCFIDVQAIDKDEIEAEITKLKELWRTNKPTRTRSPFESR FT RLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKAPMEP FT PAEQNQPEKSVGEDEEKHKKTRFRIRAGGGDGKRDDIDKIPTNALELRKSFKPPKVSQA FT AYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEF FT YRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYRFALPTMRK FT IMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIK FT HQILAANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE" FT mat_peptide <1..597 FT /product="NIb" FT mat_peptide 598..1275 FT /product="HAM1-like protein" FT mat_peptide 1276..2409 FT /product="CP" FT 3'UTR 2413..2543 XX SQ Sequence 2543 BP; 830 A; 398 C; 634 G; 681 T; 0 other; ggtaataaca gtgggcagcc ctcaactgtt gttgacaaca ccataatttt gatgattgtg 60 gttgagtact gtagagaagt gatggcacat gaaggtattg aaatgaaata taaatacatg 120 tgtaatggag atgacctcat tcttaatgcg cctgatgaag aaattccaat aattcagagt 180 cgttttaaga atttgttcgc agaatgtggt ttgaattatg actttgatga tgtccacaag 240 gagatagaca caatagagta tatgagccac tcatttgctc gcagagatgg atttttcatt 300 ccaaagttga agaaggagag aatagttgca atacttgagt gggaaagagg agatgaggtc 360 atgaggacga gaagcgctct taatgcagct tacattgaaa gttttggtta tgatgattta 420 atgacagaga ttgaaaggtt tgctgtgttc tgggcatctg aaaagggttg tgagtacccg 480 ttattagata gaaagcgagt tgaagggctt tacttggatg aacacactga tattaatgag 540 gaatggttga gtggcatttt accaccatct tttgagaatt gttacattga tttacaggtg 600 gtagacaggc ctcagtcatc gaacatgact aagagagagg aagaagtcac aagtaaagtc 660 cggatgggga tcgaagcacc aattacattc gtgacaggaa atgcacaaaa attgaaggaa 720 gtaaaacaaa tctttggtcc cactattcca atcatctctc ggaaagttga cttgccagaa 780 ccacaaggaa cagttgagga aattattaaa gaaaaagtac gtgtagcgtc tgagttgatt 840 ggagggccag ttctcgtaga agatacaagt ttgtgttttg atgctctcaa tggtctccca 900 ggaccataca ttaagtggtt tatggaaggg attggactag aaggattata taagttggtg 960 gagccgtatc aaaataaaat ggctagtgct ctctgcgtgt ttgcttttgt aaataaagtt 1020 ggtgatgatc ctataatctt taagggtgtg ctaagaggtg agattgtaat gccacgcgga 1080 ccaaattcat ttgggtggga cccaattttc cagccactta actggagaag gacatttgcc 1140 gagatgatgg ccgaggagaa gaatatgata tctcatcgat ttcgagctct gtcgttggtg 1200 agagattttt taaaggactc aagctatttc aactttgcaa agggcgttga tcgtgattgc 1260 tttattgatg tccaagcaat tgataaggat gagattgaag ctgaaataac aaaattgaag 1320 gaattgtgga ggaccaacaa gccaactaga actcgaagtc catttgaatc aaggaggctt 1380 cgtgcccctc aagtagctcg cgtgaacgag ctgctcaaac aattgaaaga tgctgggatt 1440 caaacaagta aaaggccatg tggagaacct gatgaagggg aagttgctag cccagagtca 1500 agtgaagatg aggagcaacg aacaaacaaa ggaaaagcac ctatggaacc acctgctgag 1560 caaaatcaac cagagaagtc tgtaggtgag gatgaggaga aacataaaaa gacaaggttc 1620 agaataagag ctggtggtgg agatggaaag agagatgata tagataagat tccaaccaat 1680 gctctagaac ttcggaagag tttcaaacca ccaaaagtgt cacaagcggc atatgtgtgg 1740 ataccgcgtt cgcaaagaga caatttgaca cctgatgtca tacagaactt tctggcgtac 1800 gtgcctccat cacatgctat agacaatcaa ttggcttccg gagttgaagt tgagaattgg 1860 gccatcgaag tctcaaaagc ttatggagtc accattcaag agttttatag aacgatccta 1920 cctgcttgga ttgttaattg tattgtgaat gggactagcg atgagaggaa gaatgagaaa 1980 tcgtggagag ctgttgagct aaatgcacag ggtgaggata ttgatgattc agaataccct 2040 atggaaccaa tgtatagatt tgctctcccg acaatgagga aaataatgag aaatttttcc 2100 agccaagcaa ttttaatgta tcagaatagt gtgactgctg gaaaagcttt tgtaataaaa 2160 gcagctcgaa atgccgggta tacaagtatt gaaaataagt ggttgggtat tgacttccta 2220 gccgaagcac aattgtcaca aagccaactg gacatcaaac atcaaatatt ggctgctaat 2280 gttggtagaa gtaaaactaa gttgtttgct ttagctgctc ctagtgacga taataatgtg 2340 gataaagaaa ggcacactac gcgggatgtt agtgcaacta ggcatagcta tgcaggtgct 2400 gctattgaat aaattaatct aaaagtcaag attggtggag ttttaggtaa tctgttatat 2460 tctggttgtg aagccaagat atattcagga gccctttctc catatccttt tatttagtgt 2520 gggaacacaa tatataaaag tac 2543 //