ID GU563322; SV 1; linear; genomic RNA; STD; VRL; 2258 BP. XX AC GU563322; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate PANG polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2258 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2258 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; 62869986a19f0d39eba3fa19701be2f6. XX FH Key Location/Qualifiers FH FT source 1..2258 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="PANG" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2127 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE3" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE3" FT /protein_id="ADR73017.1" FT /translation="DGFYIPKLKKERIVAILEWERGDEVMRTRSALNAAYIESFGCDDL FT MTEIERYAVFWASEKGCEYPLLDRKRVEGLYLDEYTDINEEWLSGILPPSFENCYIDLQ FT VVDRSQSSSVAKREEEVTSKIRMGIEAPITFVTGNAQKLKEVKQIFGPTIPVVSRKVDL FT PEPQGTVEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFMEGVGLEGLY FT KLVEPYQNKMASALCVFAFVNKAGDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWR FT RTFAEMMAEEKNMISHRFRALSLVRDFLKNSSYFSFAKGVDRDLFIDVQAIDKDEIEAE FT ITKLKEMWRNNKPTKTRSSFESKRLRAPQVARVDELLKQLKDAGIQTSKRPCGELDEGE FT VASSESSEDEEQQTNKGKAPMESSTERNQSEKPIGEEEDKQKKTRFRIRAGGGSEKRDD FT IDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLA FT SGVEVENWAIGVSKAYGVTIQEFYRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQG FT EDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSI FT ENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSKTRLFALAAPGDDNNVDKERHTTRD FT VSATRHSYAGAAIE" FT mat_peptide <1..312 FT /product="NIb" FT mat_peptide 313..990 FT /product="HAM1-like protein" FT mat_peptide 991..2124 FT /product="CP" XX SQ Sequence 2258 BP; 719 A; 355 C; 583 G; 601 T; 0 other; gatggttttt acattccaaa gttgaagaaa gagaggatcg ttgcaatact tgagtgggaa 60 agaggagacg aggttatgag gacaagaagc gctctcaatg cagcttacat cgagagcttt 120 ggttgtgatg acttgatgac agagattgag aggtatgctg tgttctgggc atctgaaaag 180 ggttgtgagt acccattatt ggatagaaag cgagttgaag ggctttactt ggatgaatat 240 actgatatta acgaggaatg gctgagtgga atcttaccac catcgttcga gaattgttat 300 attgacttac aagtggtgga caggtctcag tcatcgagtg ttgctaagag agaggaggaa 360 gtcactagta aaattcggat ggggatcgaa gcgccaatta catttgtcac agggaatgca 420 caaaaactga aagaagttaa acaaatcttt ggtcccacta ttccagtcgt ctctcggaaa 480 gttgatttac cagaaccaca agggacagtt gaggagatta ttaaagaaaa agcacgagta 540 gctgctgaac tcgttggagg gccagttctc gtagaagaca cgagtttgtg ttttgatgct 600 ctcaatggtc tcccaggacc atacattaag tggtttatgg aaggggttgg gttggaagga 660 ttgtataagt tggtggagcc atatcagaat aaaatggcta gcgctctctg tgtatttgct 720 tttgtgaata aagctggtga tgatcctata atctttaagg gtgtgttaag aggtgagatt 780 gtgatgccac gcggaccaaa ttcatttggg tgggacccaa tttttcagcc gctcaactgg 840 agaaggacat ttgctgagat gatggccgag gagaagaata tgatatctca tcgatttcga 900 gctctgtcgt tagtgagaga ctttttgaag aactcgagct attttagctt tgcaaagggc 960 gttgatcgtg atctcttcat tgatgttcaa gcaattgaca aggatgagat tgaggctgaa 1020 ataacaaaat tgaaagaaat gtggaggaac aacaagccaa ctaaaactcg aagttctttt 1080 gaatcaaaga ggcttcgtgc tcctcaagtg gcccgtgtgg acgaactgct taaacaactg 1140 aaagatgctg ggatacaaac aagtaagagg ccgtgtggag aacttgatga aggagaagtt 1200 gctagctcag agtcaagtga agatgaggag caacaaacaa acaaaggaaa agcgcctatg 1260 gaatcatcta ctgaacgaaa tcaatcagag aaacctatag gtgaggagga ggataaacaa 1320 aagaaaacaa ggtttagaat aagagctggt ggtggaagtg agaagagaga tgatatagat 1380 aagattccaa ccaatgctct ggaatttcga aagagcttca aaccaccgaa agtgtcacaa 1440 gcggcatatg tgtggatacc gcgttcgcaa agagataatt tgacgcctga tgtcatacag 1500 aactttctag cgtacgtgcc tccatcacat gctatagaca atcaattggc ttccggagtt 1560 gaagttgaga attgggccat cggagtttca aaagcttatg gagtcaccat tcaagagttt 1620 tataggacga tcctacctgc ttggattgtc aattgtattg tgaatgggac tagcgatgaa 1680 aggaaaaatg agaaatcgtg gagagctgtt gagttaaatg cacagggcga ggatattgat 1740 gattcagaat accctatgga accaatgtac aaatttgctc tcccaacaat gaggaaaata 1800 atgagaaatt tttccagcca agcaattcta atgtatcaga atagtgtgac tgctggaaaa 1860 gcttttgtaa taaaagcagc ccgaaatgct gggtatacaa gcattgaaaa caagtggttg 1920 ggtattgact tcctagccga agcacaattg tcacaaagcc aacttgatat caaacatcaa 1980 atattggctg ctaatgttgg tagaagtaaa actaggttgt ttgctttagc tgctcctggt 2040 gatgataata atgtggataa agaaaggcac actacgcggg atgttagtgc aactaggcat 2100 agctatgctg gtgctgctat tgaataaatt aatttgaaag tcaagtttgg tggagtttta 2160 ggtagcttgt tatattttgg ttgtgaagcc aagatatatt caggagccct ttctccatat 2220 ccttttattt agtgtggaga cgcaatatat aaaagtac 2258 //