ID GU563321; SV 1; linear; genomic RNA; STD; VRL; 2258 BP. XX AC GU563321; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate HAND polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2258 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2258 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; d8be33d58bb8c2fcea04a5b0a65b0bbc. XX FH Key Location/Qualifiers FH FT source 1..2258 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="HAND" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2127 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE2" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE2" FT /protein_id="ADR73016.1" FT /translation="DGFFIPKLKKERIIAILEWERGDEVMRTRSALNAAYIESFGYDDL FT MMEIERFAVFWASEKGCEYPLLDRKRVEGLYLDEFTEINGEWLSGILPPSFENCYIDLQ FT VVDRPQSLNVAKREEEVTSRFRMGIEAPITFVTGNAQKQKEVKQIFGPTIPIVSQKVDL FT PEPQGTAEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFLEGIGLEGLY FT KLVEPYQNRMASALCVFAFVNKVGDDPIIFKGVLRGEIVMPRGPSSFGWDPIFQPLDWK FT RTFAEMMTEEKNMISHRFRALSLVRDFLKSSSYFSFAKGLDRDIFIDVQAIDKDEIEAE FT ITKLKELWRDNRPTKTRSPFESRRLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGE FT VASPESSEDEEQRADKGKAPMEPLAERNQSEKSKSEDEGKQKKTRFRIRAGGGSEKRDD FT IDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLA FT SGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNCIVNGTSDEGKNERSWRAVELNAQG FT EDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSI FT ENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRNKTKLFALAAPGDDNNVDKERHTTRD FT VSATRHSYAGAAIE" FT mat_peptide <1..312 FT /product="NIb" FT mat_peptide 313..990 FT /product="HAM1-like protein" FT mat_peptide 991..2124 FT /product="CP" FT 3'UTR 2128..2258 XX SQ Sequence 2258 BP; 710 A; 365 C; 591 G; 592 T; 0 other; gatggttttt tcattccaaa gttgaagaaa gagagaatca tagctatcct agagtgggag 60 cgtggagatg aagttatgag aacacgaagt gcgctaaacg cagcctatat tgagagtttt 120 ggctatgatg atttgatgat ggaaattgag cgatttgctg tcttctgggc gtccgaaaag 180 ggttgtgagt atccattgtt agacagaaag cgggttgagg ggctttactt ggatgaattc 240 actgagatta atggggaatg gctgagtgga atcttaccac catctttcga gaattgttac 300 attgacctac aagtggtaga cagacctcaa tcattgaatg tggccaagag agaggaagag 360 gttaccagta gattccggat ggggatcgaa gcgccaataa catttgtcac agggaatgca 420 caaaaacaga aggaagtgaa acaaatcttt ggtcccacca ttccaattgt ttctcagaaa 480 gttgatttgc cagaaccaca agggacggct gaggaaatta tcaaagaaaa agcacgagta 540 gctgctgaac ttgttggagg gccagttctc gtagaagata cgagtttgtg ttttgatgct 600 ctcaatggtc tcccaggacc atacattaag tggtttttgg aagggattgg actggaagga 660 ctatataagt tggtggagcc gtatcagaat agaatggcta gtgctctctg tgtgtttgct 720 tttgtaaata aagttggtga tgatcctata atttttaagg gtgtgctaag aggtgagatt 780 gtaatgccac gcggaccaag ttcgtttgga tgggatccaa tttttcagcc actggattgg 840 aaaaggacat ttgctgagat gatgactgag gagaaaaaca tgatatccca tcgatttcga 900 gctctgtcgt tggtgagaga tttcttgaag agctcgagct attttagttt tgcaaagggt 960 ttagatcgtg acatctttat tgatgttcaa gcaattgaca aggatgagat tgaagctgaa 1020 ataacaaaat tgaaggaatt gtggagggac aacaggccaa ctaaaactcg aagtccattc 1080 gagtcaagga ggcttcgtgc ccctcaagta gctcgtgtga acgaactgct caaacaactg 1140 aaggatgctg ggatacaaac aagtaaaagg ccatgtggag agcctgatga aggggaagtt 1200 gctagcccag agtcaagtga agacgaggag caacgggcgg ataaaggaaa agcgcctatg 1260 gagccacttg ctgaacgaaa tcaatcagag aagtctaaaa gtgaggatga ggggaaacag 1320 aagaagacaa gattcagaat aagagccggt ggtggaagtg agaagagaga tgatatagac 1380 aagattccaa ccaatgctct agaatttcga aagagcttca agccaccaaa ggtgtcacaa 1440 gcagcatatg tgtggatacc gcgttcgcaa agagataatt tgacacctga tgtcatccag 1500 aactttctag cgtacgtgcc tccatcacat gctatagaca atcaattggc ttctggagtt 1560 gaagttgaaa attgggctat cgaagtctcg aaagcctatg gagtcaccat tcaagagttt 1620 tatagaacga tcctacctgc ttggattgtc aattgtattg tgaatgggac tagtgacgag 1680 gggaagaatg agagatcgtg gagagctgtt gagctaaatg cacagggtga ggatattgat 1740 gattcagaat accctatgga accaatgtat aaatttgctc tcccgacaat gaggaaaata 1800 atgagaaatt tttccagcca agcaatattg atgtatcaga atagtgtgac tgctggaaaa 1860 gcttttgtga taaaagcagc ccgaaatgcc gggtacacaa gcattgaaaa taagtggtta 1920 ggtattgact tcctagccga agcacaactg tcacaaagcc aacttgatat taaacatcaa 1980 atattggctg ctaatgttgg tagaaataaa actaagttgt ttgctttagc tgctcctggt 2040 gatgataata atgtggataa agaaaggcac actacgcgtg atgttagtgc aaccaggcat 2100 agctatgcgg gtgccgctat cgaataaatt agtttgaaag tcaagtttgg tggagtttta 2160 ggtagcttgt tatgttttgg ttgtgaagcc aagatatatt caggagccct ttctccatat 2220 ccttttattt agtgtggaaa cacaatatat aaaagtac 2258 //