ID GU563320; SV 1; linear; genomic RNA; STD; VRL; 2543 BP. XX AC GU563320; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate KOR1 polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2543 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2543 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; 09f6c09701cf9aadf44003b143b9da06. XX FH Key Location/Qualifiers FH FT source 1..2543 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="KOR1" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2412 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE1" FT /protein_id="ADR73015.1" FT /translation="GNNSGQPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDD FT LILNAPDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARKDGFFIPKLK FT KERIVAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERFAVFWASERGCEYPLLD FT RKRVEGLYLDEHTDINEEWLSGILPPSFENCYIDLQVIDRPQSSNMTKREEEVTSKIRM FT GIEAPITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIG FT GPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKV FT GDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWSRTFAEMMAEEKNMISHRFRALSL FT VRDFLKNSSYFNFAKGVDRDFFIDVQAIDKDEIESEITKLKELWRNNKPTRTRSPFESR FT RLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVISPESSEDEEQRTNKGKAPMEP FT PTEQSQPEKSVGEDEEKHKKTRFRIRAGGGDGKRDDIDKIPTNALEFRKSFKPPKVSQA FT AYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEF FT YRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRK FT IMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIK FT HQILAANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE" FT mat_peptide <1..597 FT /product="NIb" FT mat_peptide 598..1275 FT /product="HAM1-like protein" FT mat_peptide 1276..2409 FT /product="CP" FT 3'UTR 2413..2543 XX SQ Sequence 2543 BP; 830 A; 399 C; 629 G; 685 T; 0 other; ggcaacaata gtggtcagcc ctcaactgtt gttgacaaca ccataatttt gatgattgtg 60 gttgagtact gtagagaagt gatggcacat gaaggtattg aaatgaaata taaatacatg 120 tgtaatggag atgacctcat tcttaatgcg cctgatgaag aaattccaat aattcagagt 180 cgttttaaga atttgtttgc agagtgtggt ttgaactatg actttgatga tgtccacaag 240 gagatagaca caatagagta tatgagccac tcatttgctc gcaaagatgg atttttcatt 300 ccaaagttga agaaggagag aatagttgca atacttgagt gggaaagagg agatgaggtc 360 atgaggacga gaagcgctct taatgcagct tacattgaaa gttttggtta tgatgattta 420 atgacagaga ttgaaaggtt tgctgtgttc tgggcatctg aaaggggttg tgagtacccg 480 ttattagata gaaagcgagt tgaagggctt tacttggatg aacacactga tattaatgag 540 gagtggttga gtggcatctt accaccatct tttgagaatt gctacattga tttacaggtg 600 atagacaggc ctcagtcatc gaacatgact aagagagagg aagaagtcac aagtaaaatc 660 cggatgggga ttgaagcacc aattacattc gtaacaggga atgcacaaaa attgaaagaa 720 gtaaaacaaa tctttggtcc cactattcca atcatctctc ggaaagttga cttgccagaa 780 ccacaaggaa cagttgagga aattattaaa gaaaaagtac gtgtagcgtc tgagttgatt 840 ggagggccag ttctcgtaga agatacaagt ttgtgttttg atgctctcaa tggtctccca 900 ggaccataca ttaagtggtt tatggaaggg attgggctag aaggattata taagttggtg 960 gagccgtatc aaaataaaat ggctagtgct ctctgcgtgt ttgcttttgt aaataaagtt 1020 ggtgatgatc ctataatctt taagggtgtg ctaagaggtg agattgtaat gccacgcgga 1080 ccaaattcat ttggatggga cccaattttc cagccactta actggagtag gacatttgct 1140 gagatgatgg ccgaggagaa gaatatgata tctcatcgat ttcgagctct gtcgttggtg 1200 agagattttt tgaagaactc aagctacttc aactttgcaa agggcgttga tcgtgatttc 1260 ttcattgatg tccaagcaat tgacaaggat gagattgaat ctgaaataac aaaattgaaa 1320 gaattgtgga ggaacaacaa gccaactaga actcgaagtc catttgaatc aaggcggctt 1380 cgtgcccctc aagtagctcg tgtgaatgag ctgctcaaac aactgaaaga tgctgggatt 1440 caaacaagta aaaggccatg tggagaacct gatgaagggg aagttattag cccagagtca 1500 agtgaggatg aggagcaacg aacaaacaaa ggaaaagcac ctatggaacc gcctactgag 1560 caaagtcaac cagagaagtc tgtaggtgag gatgaggaga aacataaaaa gacaaggttc 1620 agaataagag ctggtggtgg agatggaaag agagatgata tagataagat tccaaccaat 1680 gctctagaat ttcggaagag tttcaaacca ccaaaagtgt cacaagcggc atatgtgtgg 1740 ataccgcgtt cgcaaagaga caatttgaca cctgatgtca tacagaactt tctagcgtac 1800 gtgcctccat cacatgctat agacaatcaa ttggcttctg gagttgaagt tgagaattgg 1860 gccatcgaag tctcaaaggc ttatggagtc accattcaag agttttatag aacgatccta 1920 cctgcttgga ttgttaattg tattgtgaat gggactagcg atgagaggaa gaatgagaaa 1980 tcgtggagag ctgttgagct aaatgcacag ggtgaggata ttgatgattc agaataccct 2040 atggaaccaa tgtataaatt tgctctcccg acaatgagga aaataatgag aaatttttcc 2100 agccaagcaa ttttaatgta tcagaatagt gtgactgctg gaaaagcttt tgtaataaaa 2160 gcagctcgaa atgccgggta cacaagtatt gagaataagt ggctaggtat tgacttccta 2220 gccgaagcac aattgtcaca aagccaactg gatatcaaac atcaaatatt ggctgctaat 2280 gttggtagaa gtaaaactaa gttgtttgct ttagctgctc ctagtgacga taacaatgtg 2340 gataaagaaa ggcacactac gcgggatgtt agtgcaacta ggcatagcta tgcaggtgct 2400 gctattgaat aaattaattt aaaagtcaag tttggtggag ttttaggtga cttgttatat 2460 tctggttgtg aagccaagat atattcagga gccctttctc catatccttt tatttagtgt 2520 ggaaacacaa tatataaaag tac 2543 //