ID   GU553134; SV 1; circular; genomic DNA; STD; VRL; 1002 BP.
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AC   GU553134;
XX
DT   21-APR-2010 (Rel. 104, Created)
DT   21-APR-2010 (Rel. 104, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus isolate Drohndorf-15 segment DNA-R,
DE   complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-1002
RX   DOI; 10.1094/PDIS-94-5-0642C.
RX   AGRICOLA; IND44357802.
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "First Report of a Nanovirus Disease of Pea in Germany";
RL   Plant Dis. 94(5):642-642(2010).
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RN   [2]
RP   1-1002
RA   Grigoras I.;
RT   ;
RL   Submitted (20-JAN-2010) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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DR   MD5; 861e51feebe712f5f445f2ce4c9200c4.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1002
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-R"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /note="PNYDV-[DE] DNA-R"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(983..1002,1..13)
FT                   /note="part of replication origin"
FT   misc_feature    join(996..1002,1..2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   rep_origin      1
FT                   /direction=RIGHT
FT                   /note="first base of viral (+) strand"
FT   regulatory      55..61
FT                   /regulatory_class="TATA_box"
FT   regulatory      92..97
FT                   /regulatory_class="polyA_signal_sequence"
FT   CDS             100..960
FT                   /codon_start=1
FT                   /product="master replication initiator protein"
FT                   /note="M-Rep; sequence specific endonuclease; nucleotidyl
FT                   transferase; ATPase; origin binding"
FT                   /db_xref="GOA:D5KB49"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D5KB49"
FT                   /protein_id="ADE87486.1"
FT                   /translation="MSRQVICWCFTLNNPLSLLSLHESMKYLVYQREQGESGNIHFQGY
FT                   VEMKKRTSLAGMKRLIPGAHFEKRRGTQGEARAYAMKEDSRLEGPWEEGEFHLTVEDKL
FT                   REVMEDMKNTGKRPIEYIEECCNTYDKSSGTLREYQGELRKKRAINGWQLQRKPWMDEV
FT                   ESLLETRDGRRIIWVYGPQGGEGKTSFAKHLVKTRDAFYSTGGKTADIAFAWDHQPIVL
FT                   FDFPRSFEEYVNYGVMEQLKNGIIQSGKYQSVIKYAEYVEVIAFANFTPRSGMFSEDRI
FT                   IIVNV"
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SQ   Sequence 1002 BP; 296 A; 184 C; 247 G; 275 T; 0 other;
     acccccgtgc caggatcagc ggagtcatca catgactctc acgtgctata cctctatata        60
     tatgtaatat gtgtgtaata ttttatcatt caataaaata tgtctcgcca agttatatgt       120
     tggtgtttta cattaaacaa tcctctctct cttctctctc ttcatgagtc catgaagtac       180
     cttgtttacc aacgtgaaca aggtgaatct ggaaatatcc atttccaggg ttatgttgaa       240
     atgaagaagc gtacctctct tgctggtatg aagaggctca tcccaggagc tcattttgag       300
     aagaggagag gtacacaagg agaagctcgt gcttatgcta tgaaggaaga ctcccgtctt       360
     gaaggtccat gggaagaagg tgagtttcac ctcacagtgg aagacaagct tcgtgaagtt       420
     atggaagata tgaagaacac aggtaaacgt cctattgaat acatagaaga gtgttgtaac       480
     acctacgaca agtcgtccgg gactctcagg gaataccaag gtgagttacg gaagaaacgt       540
     gccattaatg gatggcagtt gcagaggaag ccatggatgg acgaggtcga aagcttgctt       600
     gagaccagag atggaagaag aatcatatgg gtgtatggac cacaaggtgg ggaagggaaa       660
     acatctttcg caaagcatct tgtaaagacg cgtgatgctt tctattccac tggcggaaag       720
     acagccgaca ttgctttcgc ttgggaccac caaccaatag tgcttttcga ctttcctcga       780
     agcttcgagg aatatgttaa ctatggtgtt atggaacaat taaagaatgg gattattcaa       840
     tcaggcaaat accaaagtgt aattaaatat gctgaatatg tagaagttat tgcttttgct       900
     aattttaccc cgcgtagcgg tatgtttagt gaggatagga tcattattgt aaatgtgtga       960
     cgtcatgtga tcccgggatg agctggcacg gggcttagta tt                         1002
//