Dbfetch
ID GU478326; SV 1; linear; genomic RNA; STD; VRL; 1816 BP. XX AC GU478326; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Sweet potato feathery mottle virus isolate R5 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-1816 RX DOI; 10.1007/s00705-010-0805-y. RX PUBMED; 20882307. RA Untiveros M., Quispe D., Kreuze J.; RT "Analysis of complete genomic sequences of isolates of the Sweet potato RT feathery mottle virus strains C and EA: molecular evidence for two distinct RT potyvirus species and two P1 protein domains"; RL Arch. Virol. 155(12):2059-2063(2010). XX RN [2] RP 1-1816 RA Untiveros M., Quispe D., Kreuze J.; RT ; RL Submitted (18-JAN-2010) to the INSDC. RL Crop Improvement and Genetic Resources, International Potato Center, 1895, RL La Molina Av., Lima 11, Peru XX DR MD5; ee8520fac5e870d2f866c43ed61c95a8. XX FH Key Location/Qualifiers FH FT source 1..1816 FT /organism="Sweet potato feathery mottle virus" FT /strain="EA" FT /isolate="R5" FT /mol_type="genomic RNA" FT /db_xref="taxon:12844" FT CDS <1..1594 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:E5DTP8" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E5DTP8" FT /protein_id="ADQ53991.1" FT /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANG FT DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKL FT EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR FT NGKAPYIAETALKALYTGVQPNASELSAYARVLKEMYDDSVLQENDLEVYHQSKENTEF FT KDAGANPPAPKPKDIPPPPTITEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKEKE FT SIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQF FT EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG FT DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA FT RYAFDFYELHSTTPARAKEAHLQMKAAALKNAKNRLFGLDGNVSTQEEDTERHTTTDVT FT RNIHNLLGMRGVQ" FT mat_peptide <1..649 FT /product="NIb protein" FT mat_peptide 650..1591 FT /product="coat protein" XX SQ Sequence 1816 BP; 566 A; 341 C; 431 G; 478 T; 0 other; tggtaacaac agtgggcagc catccactgt ggttgataat acacttatgg ttgtgttagc 60 agttcactac acactgctga aactaggaat ccaagaaagc gagtttgata aatgctgtgt 120 ctttttcgca aatggtgatg atttattgtt ggcaatgagg ccagacacag cccatttact 180 ggataagttt ggtgaatgtt tttctgaatt agggctcaat tacgactttt catcacgaac 240 aaataagaaa gaagatctat ggtttatgtc acactgtggc gtgaaacgtg atggaatttt 300 tattccgaag ttggagcctg aaaggattgt ttcaattctt gaatgggatc gttcacacga 360 gccaatccat cgactagaag cgatatgtgc cgcaatggtg gaatcatggg gttatgatga 420 acttcttcat catattagga aattttatgc atgggttttg gaccaagccc catacaatga 480 actagcacgg aacgggaaag caccatacat agctgaaact gcactcaaag cactctatac 540 tggtgttcaa cctaacgctt ctgaattgag tgcgtatgcg agagtactca aagaaatgta 600 tgatgacagt gtgctccaag agaatgattt ggaagtatat catcaatcta aagagaacac 660 tgaatttaaa gatgcaggag cgaaccctcc agcccctaag cctaaggaca ttcctccacc 720 acccacaata actgaaatta ctgatccaga ggacccgaag caggcagctt tgaaagctgc 780 acgagcaaag caacccgcag tcattccaga atcatatgga cgagacacga gcaaagagaa 840 ggagtcaata gtggggacat catcaaaggg tgtgagggat aaagatgtga atgttggcac 900 cgttggcaca tttgttgtgc cacgtgtcaa aatgaatgca aacaagaaaa ggcaaccaat 960 ggtcaatgga agggctatta ttaatttcca gcacttgtca acatatgaac cagagcagtt 1020 tgaggttgca aacacccgtt cgactcaaga acagttccaa gcatggtatg aaggagttaa 1080 aggggattat ggtgttgatg acacaggaat ggggatctta ttaaatggac taatggtttg 1140 gtgcattgaa aatggcacat ccccaaatat aaatggtgtg tggacaatga tggatggtga 1200 tgagcaagtg acatatccaa ttaaaccatt actggaccat gcagtgccta cttttaggca 1260 gattatgacg cacttcagtg acgttgctga agcttacata gagatgcgaa accgtacaaa 1320 ggcatacatg ccaaggtatg gtctacaacg taatttgact gatatgagtc ttgcgcgata 1380 tgcatttgat ttctacgagc tgcattcaac cacccctgca cgtgctaaag aagcacattt 1440 acagatgaag gcagccgcac ttaagaatgc gaaaaatcgg ttgtttggtt tggatggaaa 1500 cgtctccacg caagaagaag atacggagag gcacacgaca actgacgtta ctagaaatat 1560 acataacctc ttaggaatga ggggtgtgca ataggacatc ctctgcactg tagtttatac 1620 ttatgttatc tttagtatgc ctttaattta aattcgtgtc tttcagtccc gaaggagatg 1680 gttgagtgca taacatggtg ggattatatc tcggttattg catttgagaa gtcgcctttc 1740 tattacgtat cataagggac tcttaaaagt gaggagtacc tcgtaagaaa agcctttttg 1800 gttcgtgatc gagcca 1816 //