ID GU456688; SV 1; circular; genomic DNA; STD; VRL; 2981 BP. XX AC GU456688; XX DT 06-JUL-2010 (Rel. 105, Created) DT 06-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Hom3:4k:09, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2981 RX DOI; 10.1016/j.virusres.2010.05.016. RX PUBMED; 20566344. RA Briddon R.W., Heydarnejad J., Khosrowfar F., Massumi H., Martin D.P., RA Varsani A.; RT "Turnip curly top virus, a highly divergent geminivirus infecting turnip in RT Iran"; RL Virus Res. 152(1-2):169-175(2010). XX RN [2] RP 1-2981 RA Varsani A., Briddon R.W., Heydarnejad J., Khosrowfar F., Massumi H., RA Martin D.P.; RT ; RL Submitted (13-JAN-2010) to the INSDC. RL Electron microscope Unit, University of CapeTown, Rondebosch, Cape Town, WP RL 7701, South Africa XX DR MD5; 55808694910673672fbe5ca840b2e1cd. XX FH Key Location/Qualifiers FH FT source 1..2981 FT /organism="Turnip curly top virus" FT /host="Brassica rapa" FT /isolate="IR:Hom3:4k:09" FT /mol_type="genomic DNA" FT /country="Iran" FT /lat_lon="29.69 N 52.17 E" FT /collection_date="2009" FT /db_xref="taxon:859650" FT CDS 237..614 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:L0CSQ5" FT /protein_id="ADJ58438.1" FT /translation="MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPE FT KCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEE FT TGGEESPVQQSSPVQSSSCET" FT CDS 469..1299 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:D8WZ45" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D8WZ45" FT /protein_id="ADJ58439.1" FT /translation="MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVA FT ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPCGTFPKPSDIFDMEY FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY" FT CDS complement(1296..1718) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:D8WZ40" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WZ40" FT /protein_id="ADJ58443.1" FT /translation="MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIIS FT LNLVINGISHVLFEDFKFVESVINQEYRVAMKEEFY" FT CDS complement(1423..1851) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:D8WZ47" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8WZ47" FT /protein_id="ADJ58442.1" FT /translation="MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKXXIHH FT ECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTE FT TTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLPK" FT CDS complement(1739..2854) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:D8WZ48" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8WZ48" FT /protein_id="ADJ58440.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQAIQCPSTKKFI FT RICKERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYRVIP FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS FT WSLQNSVITTIEEPLFNITSDQEVEDSTPTV" FT CDS complement(2437..2694) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WZ49" FT /protein_id="ADJ58441.1" FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNRA FT PTSSPTSRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR" XX SQ Sequence 2981 BP; 805 A; 520 C; 733 G; 921 T; 2 other; accggatggc ccaaaaaaaa atttttggcg cgtgttttga tggtgatagg tgcgtagtgg 60 agaagccgcg ccaaagtgaa agtaaagacg attagtcttg gtcgtgtggt cccaaaggta 120 aagtattaaa gattggttag tgagtgcgat tacacgtgta tctgtactat ttgtctccga 180 agctaaactt cggctatata attagcatcg gtattaggaa ttgtgtatat taaaaaatga 240 tttggagaat cgcaaaagac gataaacggg ttagggcgtt taggtataaa aaaagaaggt 300 tttactcttt atcggagtat ttattggccc ctttggctac acatttacga ctcgctcgta 360 ttttaccaga gaagtgttgg tccgtagttc cagcttatac cgacgaggcg tatagttttc 420 tgtttatgtt aaaagaagaa acgcgaacgc cgtttcaaat attgaaagat gagtggaacg 480 tggagtttaa agaggccgag gtggcactct ccaggctacg acttagcacc gaagacaccg 540 gtgaagagac cggcggtgag gagagccctg ttcaacaatc aagcccagtt cagtcgagta 600 gctgcgagac gtagatggtc gaagtttcct gttcgaggta ataaaccgta taggtatcgt 660 aagttaaaag ctagtgatta tcagatctac aaggataaga ttggtggaga taatgggtgg 720 acggtgacat ttagtgggga ctgcactatg ttgaataatt acgttagagg aattggtagg 780 gaccagcgtg actcggtgat gactaagacc gcacatatgc attttaatgg ggtattgatg 840 gccaatgatg ctttctggga agcgcctaat tatatgacta tgtatagttg gattattctt 900 gataatgatc cttgtggtac atttccaaag ccctctgaca tatttgatat ggagtataaa 960 gagtttccgt ccatgtatga ggtcgccgag agtgttaaat ctcggtttat tgttaagaga 1020 aagacggagc attatttgcg gtctaccggt gttgcttttg gggagaaaca aaattataag 1080 gcgcctaatg ttggtccggt taagaagcct atacgtatga agtttcgtaa tatatggcag 1140 ccttccgagt ggaaggatac ggcgggagga aaatacgagg atttgaagaa aggggctttg 1200 ttatacgtat gtatttgtga taacaaggct actcaatttt cgtttaattt gaagggtcag 1260 tggaccatgt atttcataaa tagagattta atgtattaat aaaactcttc tttcattgca 1320 acacggtact cttgatttat tacagactcg acaaacttaa aatcctcaaa taaaacatga 1380 ctaataccat ttattacaag gttaagggat ataatcccta gattatttag gtagaagagt 1440 aatctcttca aaaaaatcgt cgtaaatcga tgtccagtca aactccggtg acgacccaat 1500 accgtgaatt cgatccaagc catgtgtaat cccagttgtt tccgtaggtt gtagttgaat 1560 cggagttgta atctgatgtt gaagaacccg ttctcctggt ggtcccatga tattagtttg 1620 agatgaaacg ggtttggtac ttgatgtatg tatgttccaa tcgttgattg acgatgagtt 1680 atgggttccc ctgtgcgtaa atccctcacc acactcatga tgtattgnna atttgcactt 1740 acacggtagg agtactgtct tcgacttctt gatcactcgt gatattgaag agaggttcct 1800 cgattgttgt gatgactgaa ttttgtaaac tccaggactt aagggcttca ttctctggtt 1860 tgtcgaggaa gttttgatat gaggctccgt ctcctgggtt gcataaaatg atcgaaggga 1920 ttcccccttt tataatacgt ggcttcccgt atttgaggtt tgtctgccac tccttttgcg 1980 caccaattaa atgcttccag tgcttcatct ttagataatg ggggtccacg tcatcaatca 2040 cgttgtaaga aacgtcgtcg ttgtatactt tagtggagaa gtcgagatga ccggttatgt 2100 agttatgaga tccaagggat cttgcccaca gggttttacc tgttcttgaa ggaccttcta 2160 tgattattga tttaggtctg tcgatagatg gaattaccct atatttactc ggccccgcag 2220 gggaattgga ctcctctaga aaaaaattag actctaacca atccaaaata tcatctgtta 2280 agacgaattg ggtatggttg tatttgggga cgtatcctac aggaggagga ttgaatatgg 2340 ccgctaagtt tggttttagg ttatggaatt gaaagatgta atctttaggg agtttctccc 2400 taatgacagc caaagcggct tcagcggtac ctgagtttaa cgcctctgca catgcatcat 2460 tagccgtctg ttgacctcct cgtgcagatc gtgcatcgat ctgaaattca ccccagtcga 2520 tgtaatctcc gtccttctcg atgtaggact tgacgtcgga gctcgattta gctccctgaa 2580 tatttgggtg gcagatgcga ccggaacctc catctcgtaa atcgaaatga cgggggttat 2640 agagctggat ttttccttcg aactggataa gcacatggag atgaggttcc ccattatcgt 2700 gcctttcttt acaaattcgt atgaatttct tggttgaagg acactgtata gcttgtagtt 2760 gcagaagagc gtcttcttta gttagatggc agtgagggta tgttaggaaa atatttttag 2820 catgaatgcg atattgcctc ggagtccttg gcattttcgg tatttgtaga aatgaattgg 2880 ggttacgctc aaactctatt gtatcggggt tactggggtt gtatatatag tgtggattgt 2940 agaaggcctc ttgctcacat ttgggccatc cgtttaatat t 2981 //